HHsearch results for GI: 254780409 and protein with PDBid: 1wd5_A
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.66 E-value=5.1e-16 Score=125.15 Aligned_cols=123 Identities=28% Similarity=0.391 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC-CCCCE----------------------
Q ss_conf 1037777876530585551885166563578999999709979998326767-63210----------------------
Q gi|254780409|r 143 YALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREH-PGKIE---------------------- 199 (310)
Q Consensus 143 ~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~-~~~v~---------------------- 199 (310)
.+...|++.+++. ..++++|+++..||+..|..+|+.|+.|+.++..++.. +++.+
T Consensus 8 ~aG~~LA~~l~~~-~~~~~vVl~ip~Ggv~~a~~iA~~l~~~~d~~~~~ki~~p~~~e~~~gavs~~~~~~~~~~~~~~~ 86 (208)
T 1wd5_A 8 HAGALLAEALAPL-GLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYALRYA 86 (208)
T ss_dssp HHHHHHHHHHGGG-CCCSCEEEECTTHHHHHHHHHHHHHTCEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHHHHS
T ss_pred HHHHHHHHHHHHH-CCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCEEECCCCEEEECHHHHHC
T ss_conf 9999999999961-899879991798764999999998512101466750247887101133075599779710364305
Q ss_pred ------------------------EECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf ------------------------00024545574289952132033668889898752687521787205555716898
Q gi|254780409|r 200 ------------------------VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIE 255 (310)
Q Consensus 200 ------------------------~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e 255 (310)
.....++++||+||||||+|+||+||..+++.|+++||++|+++ ++++++++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a--~pv~~~~~~~ 164 (208)
T 1wd5_A 87 DQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVA--VPVASPEAVE 164 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEE--EEEBCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE--EEECCHHHHH
T ss_conf 81566578888999999876464025897455787899971513358999999999997699989999--9856877887
Q ss_pred HHHHCCCCEEEECCC
Q ss_conf 886369989998178
Q gi|254780409|r 256 RIEKSKMKELVITDS 270 (310)
Q Consensus 256 ~l~~s~i~~iv~TnT 270 (310)
++... .+ +++...
T Consensus 165 ~l~~~-~D-~v~~~~ 177 (208)
T 1wd5_A 165 RLKAR-AE-VVALSV 177 (208)
T ss_dssp HHHTT-SE-EEEEEC
T ss_pred HCCCC-CC-EEEECC
T ss_conf 51667-99-899857