RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780409|ref|YP_003064822.1| ribose-phosphate
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
(310 letters)
>gnl|CDD|30810 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 410 bits (1056), Expect = e-115
Identities = 182/311 (58%), Positives = 231/311 (74%), Gaps = 2/311 (0%)
Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
MKIF+G+SN LA++I L LGK V F D E++V I E+VRG+DVFI+QSTS P
Sbjct: 5 MKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPV 64
Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
ND LMELLIMIDA++R+SA+RIT VIPYFGY RQD+ PR PISAKLVANL+ AGADR
Sbjct: 65 NDNLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADR 124
Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180
V+ +DLHA Q+QGFFDIP DNLYA P+L I+E+ D+ + +VVSPD GGV RARALA R
Sbjct: 125 VLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSPDKGGVKRARALADR 184
Query: 181 LGCLLAIVDKRR-EHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239
LG LAI+DKRR P +EVMN+IG VEGKD +++DDI+DTGGT+ AA AL E+GA
Sbjct: 185 LGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKK 244
Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299
V A THGV S +++ER+E S + E+++TD+I P K K+ ++++A L+ EAI R
Sbjct: 245 VYAAATHGVFSGAALERLEASAIDEVIVTDTI-PLPEKKKIPKVSVISVAPLIAEAIRRI 303
Query: 300 FEERSISSLFD 310
S+SSLFD
Sbjct: 304 HNGESVSSLFD 314
>gnl|CDD|36661 KOG1448, KOG1448, KOG1448, Ribose-phosphate pyrophosphokinase
[Nucleotide transport and metabolism, Amino acid
transport and metabolism].
Length = 316
Score = 319 bits (818), Expect = 8e-88
Identities = 155/312 (49%), Positives = 205/312 (65%), Gaps = 3/312 (0%)
Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
+K+F+G+S+ LA+ I L LGK ++ FS+ E V+IGE+VRGEDV+I+QS S P
Sbjct: 4 IKLFSGDSHPELAERIAARLGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPI 63
Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
ND LMELLIMI+A +R+SA R+T VIPYF Y RQD+K R PI AKLVANL++ AGAD
Sbjct: 64 NDNLMELLIMINACKRASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADH 123
Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERN-DISNLMVVSPDVGGVVRARALAK 179
VI +DLHA Q+QGFFDIP DNLYA P + I+E D N ++VSPD GG R +LA
Sbjct: 124 VITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPDSENAVIVSPDAGGAKRVTSLAD 183
Query: 180 RLGCLLA-IVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238
RL A I +RR+ M ++G V+GK IL+DD+ DT GTL AAD L E GA
Sbjct: 184 RLNLDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAK 243
Query: 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298
V A +THGV S +IER+ +S + +V+T++I P D K+ + ++ ++ EAI R
Sbjct: 244 KVYAIVTHGVFSGPAIERLNESALDRVVVTNTI-PIDDSCLEPKLTTIDVSPVLAEAIRR 302
Query: 299 TFEERSISSLFD 310
T S+S LF
Sbjct: 303 THNGESVSYLFS 314
>gnl|CDD|36716 KOG1503, KOG1503, KOG1503, Phosphoribosylpyrophosphate
synthetase-associated protein [Amino acid transport and
metabolism, Nucleotide transport and metabolism].
Length = 354
Score = 207 bits (527), Expect = 4e-54
Identities = 123/341 (36%), Positives = 192/341 (56%), Gaps = 34/341 (9%)
Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
M +F+GNS+ LA+ + + L LGKA+V ++RE VEI E+VRG+DVFI+Q+ S
Sbjct: 9 MVLFSGNSHPELAKMVAERLGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDV 68
Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
N+ +MELLIM A + S A+ I GVIPY Y +Q + R I +KL+A+++ +AG
Sbjct: 69 NNDVMELLIMAYACKTSCAKSIIGVIPYLPYSKQCKM-RKRGSIVSKLLASMMCKAGLTH 127
Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER-NDISNLMVVSPDVGGVVRARALAK 179
+I +DLH ++QGFF IP DNL A P L + I+E D N ++V+ G +A++ A+
Sbjct: 128 LITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAE 187
Query: 180 RLGCLLAI------------VDKRREHPGKIEV------------------MNIIGKVEG 209
RL LA+ VD R P + + ++G V G
Sbjct: 188 RLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGDVGG 247
Query: 210 KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD 269
+ I++DDI+D + AA+ L E+GA + THG+LSS + +E+S + E+V+T+
Sbjct: 248 RIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEVVVTN 307
Query: 270 SIQPTDLVK-SSAKIRILTIAQLMGEAINRTFEERSISSLF 309
++ P ++ K KI+ + I+ ++ EAI R S+S LF
Sbjct: 308 TV-PHEVQKLQCHKIKTVDISLIISEAIRRIHNGESMSYLF 347
>gnl|CDD|143924 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the
ATP-GTP-binding domain.
Length = 123
Score = 66.2 bits (162), Expect = 1e-11
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP---------GK 197
L I+E I ++V GG+ A ALA+ LG L +V KR P
Sbjct: 16 ALAEKIREEG-IDPDVIVGIARGGIPLATALARELGIPLVLVRKRISLPSSIKSRGGESV 74
Query: 198 IEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITH 246
+ + ++GK +++DD++DTGGTL A + L + GA V +
Sbjct: 75 TLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123
>gnl|CDD|31242 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 45.8 bits (108), Expect = 2e-05
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 174 ARALAKRLGCLLAIV--------------DKRREHPGKIEVMNIIGKVEG-KDCILIDDI 218
ARALA+RLG +A+ ++RR G + +E K+ +L+DD+
Sbjct: 137 ARALARRLGKPIALRRVKDTSPQQGLKALERRRNLKGAFRL---KKGIEEPKNVLLVDDV 193
Query: 219 VDTGGTLCGAADALYEQGALSVTAY 243
TG TL AA L E GA V
Sbjct: 194 YTTGATLKEAAKLLREAGAKRVFVL 218
>gnl|CDD|30849 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
related PRPP-binding proteins [Nucleotide transport and
metabolism].
Length = 179
Score = 44.9 bits (106), Expect = 3e-05
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 134 FFDIPT--DNLYALPILERDIKERNDISNL-MVVSPDVGGVVRARALAKRLGCLLAIVDK 190
F DI + L L ++ ER + +V+ + G+ A A+A LG V K
Sbjct: 25 FVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVRK 84
Query: 191 RREHPGK-----------IEVMNIIGKV--EGKDCILIDDIVDTGGTLCGAADALYEQGA 237
+ + P + E + + G +++DD++ TGGT + L + GA
Sbjct: 85 KGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGA 144
>gnl|CDD|30809 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 41.8 bits (98), Expect = 3e-04
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGK-VEGKDCILIDDIVD 220
+V P +GG+ A A A L L + R+E I G V+G+ ++++D++
Sbjct: 64 VVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVIT 123
Query: 221 TGGTLCGAADALYEQGALSVTAYI 244
TGG++ A +AL E GA V +
Sbjct: 124 TGGSILEAVEALREAGAEVVGVAV 147
>gnl|CDD|31197 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 41.5 bits (97), Expect = 3e-04
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 163 VVSPDVGGVVRARALAKRLGCLLAIVDKRR----EHPGKIEVMNI-IGKVEGKDCILIDD 217
VV + GV A +A LG LAI R+ E GK ++ VEGK C+++DD
Sbjct: 90 VVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDD 149
Query: 218 IVDTGGTLCGAADALYEQGALSVTAYI 244
++ TG T+ + L E+G V +
Sbjct: 150 VITTGSTIKETIEQLKEEGGKPVLVVV 176
>gnl|CDD|30979 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 148 LERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI--VDKRREHPGKIE------ 199
L I E + +VV G L + + L + + G
Sbjct: 24 LAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKI 83
Query: 200 VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241
+ ++ ++G+D ++++DI+D+G TL D L E+GA SV
Sbjct: 84 LKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVR 125
>gnl|CDD|32417 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 37.3 bits (86), Expect = 0.005
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 148 LERDIKERNDISNLMVVSPDVGGVVRARALAKRLGC--LLAIVDKR----REHPGKIEVM 201
L I+ +++V GG++ AR L+ LG L +I + E G+ +V
Sbjct: 19 LAEKIRASGFKPDVIVAIAR-GGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVK 77
Query: 202 NII--GKVEGKDCILIDDIVDTGGTLCGAADAL 232
I + GK +++DDIVDTG TL A + L
Sbjct: 78 YPITIDPLSGKKVLIVDDIVDTGETLELALEEL 110
>gnl|CDD|32248 COG2065, PyrR, Pyrimidine operon attenuation protein/uracil
phosphoribosyltransferase [Nucleotide transport and
metabolism].
Length = 179
Score = 36.7 bits (85), Expect = 0.008
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 152 IKERN-DISNLMVVSPDVGGVVRARALAKRLGCL------LAIVD----------KRREH 194
I ERN + NL++V GV A LA+R+ L + +D K
Sbjct: 23 IIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLR 82
Query: 195 PGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQG 236
P + + + + GK IL+DD++ TG T+ A DAL + G
Sbjct: 83 P-QAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYG 123
>gnl|CDD|36924 KOG1712, KOG1712, KOG1712, Adenine phosphoribosyl transferases
[Nucleotide transport and metabolism].
Length = 183
Score = 34.1 bits (78), Expect = 0.045
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 177 LAKRLGCLLAIVDKRREHPGKI-----------EVMNI-IGKVE-GKDCILIDDIVDTGG 223
+A LG + K + PG++ + + G ++ G+ +++DD++ TGG
Sbjct: 77 IALALGAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGG 136
Query: 224 TLCGAADALYEQGA 237
TL A + L GA
Sbjct: 137 TLAAATELLERVGA 150
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 31.9 bits (73), Expect = 0.24
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KPSP TP++A L+A ++T+AG
Sbjct: 150 KPSPFTPLTALLLAEILTEAG 170
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 97 KPSPRTPISAKLVANLITQAGAD 119
KPS TP++A +A L+ +AG
Sbjct: 126 KPSELTPLTALALAELLQEAGLP 148
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 30.3 bits (69), Expect = 0.82
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 97 KPSPRTPISAKLVANLITQAGAD 119
KPS TP++A L+A L+ +AG
Sbjct: 130 KPSELTPLTALLLAELLAEAGLP 152
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 29.4 bits (67), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KPS R P +A +A L+ +AG
Sbjct: 170 KPSERVPGAAMRLAELLQEAG 190
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 29.1 bits (66), Expect = 1.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ RTP+SA ++ ++ + G
Sbjct: 157 KPASRTPLSALILGEVLAETG 177
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 28.7 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KPSP TP+ A L+A +AG
Sbjct: 171 KPSPETPLDAYLLAEAAEEAG 191
>gnl|CDD|37661 KOG2450, KOG2450, KOG2450, Aldehyde dehydrogenase [Energy
production and conversion].
Length = 501
Score = 28.7 bits (64), Expect = 2.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ +TP++A +A+L +AG
Sbjct: 192 KPAEQTPLTALYLASLCKEAG 212
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ +TP+SA +A L+ +AG
Sbjct: 157 KPASQTPLSALKLAELLLEAG 177
>gnl|CDD|32109 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 28.3 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK 259
G+ IL+DD + TG T+ A AL +G + I V + +E
Sbjct: 124 GRTVILVDDGIATGATMKAAVRALRAKGPKEI--VIAVPVAPEDAAAELES 172
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KPS +TP+SA +A+L+ +AG
Sbjct: 154 KPSEKTPLSAIYLADLLYEAG 174
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 27.9 bits (63), Expect = 3.4
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 35/102 (34%)
Query: 97 KPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERN 156
KP+ +TP+ A L+ +AG +P D L +P +
Sbjct: 201 KPAEQTPLIAARAVELLHEAG-------------------VPRDVLQLVP------GDGE 235
Query: 157 DISNLMVVSPDVGGVVR----------ARALAKRLGCLLAIV 188
+I +V P + GV+ RALA+R G +L ++
Sbjct: 236 EIGEALVAHPRIDGVIFTGSTETAKLINRALAERDGPILPLI 277
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 28.2 bits (64), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ TP+SA +A L +AG
Sbjct: 151 KPAEETPLSALALAELAEEAG 171
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 27.9 bits (63), Expect = 3.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ +TP+SA +A LI +AG
Sbjct: 175 KPAEQTPLSALYLAELIKEAG 195
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 28.0 bits (63), Expect = 4.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+P TP+SA L+ +I +
Sbjct: 157 KPAPDTPLSALLLGEIIAETD 177
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 27.7 bits (62), Expect = 4.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ +TP++A +A+LI +AG
Sbjct: 179 KPAEQTPLTALYLASLIKEAG 199
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 27.5 bits (62), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KPS TP++A L+A L +AG
Sbjct: 151 KPSEWTPLTAWLLAELANEAG 171
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 27.2 bits (61), Expect = 6.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ TP+ A + ++ +AG
Sbjct: 200 KPAEDTPVIAAKLVEILEEAG 220
>gnl|CDD|144841 pfam01398, Mov34, Mov34/MPN/PAD-1 family. Members of this family
are found in proteasome regulatory subunits, eukaryotic
initiation factor 3 (eIF3) subunits and regulators of
transcription factors. This family is also known as the
MPN domain and PAD-1-like domain. It has been shown that
this domain occurs in prokaryotes.
Length = 117
Score = 27.0 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 184 LLAIVDK-RREHPGKIEVMNI-IGKVEGKDCILIDDI 218
LL IVD RR K EVM + +G +EG I + +
Sbjct: 12 LLKIVDHARRGGKSKEEVMGVLLGTLEGDRVIEVTNS 48
>gnl|CDD|38577 KOG3367, KOG3367, KOG3367, Hypoxanthine-guanine
phosphoribosyltransferase [Nucleotide transport and
metabolism].
Length = 216
Score = 27.1 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
GK+ ++++DIVDTG TL + V
Sbjct: 125 GKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMV 156
>gnl|CDD|34675 COG5071, RPN5, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 439
Score = 26.9 bits (59), Expect = 7.1
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRR 192
NL L I E+ +++ +D S V + ++ + + L L + K+
Sbjct: 31 NLEKLLIFEKKVRQASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKKH 82
>gnl|CDD|143938 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 26.7 bits (60), Expect = 7.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KPS TP++A L+A L +AG
Sbjct: 160 KPSELTPLTALLLAELFEEAG 180
>gnl|CDD|30384 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 26.7 bits (59), Expect = 8.1
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELV 266
++ + I++D ++ TGG+ A D L ++G + V + I+ +EK+ +
Sbjct: 122 IDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNI-KVVSLVAAPEGIKAVEKAHPDVEI 180
Query: 267 ITDSIQPT 274
T +I
Sbjct: 181 YTAAIDEG 188
>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases
(ADH) and class III ADG (AKA formaldehyde
dehydrogenase). NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes or ketones. This group contains members
identified as zinc dependent alcohol dehydrogenases
(ADH), and class III ADG (aka formaldehyde
dehydrogenase, FDH). Alcohol dehydrogenase in the liver
converts ethanol and NAD+ to acetaldehyde and NADH,
while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation.
Class III ADH are also know as glutathione-dependent
formaldehyde dehydrogenase (FDH), which convert
aldehydes to the corresponding carboxylic acid and
alcohol. ADH is a member of the medium chain alcohol
dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 371
Score = 26.6 bits (59), Expect = 8.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 219 VDTGGTLCGAADALYEQGA-----LSVTAYITHGVLSSSSIERIEKS 260
+ GTL L +G L V+A+ + V+S S+ +I+K
Sbjct: 117 ANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKD 163
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 26.6 bits (59), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 97 KPSPRTPISAKLVANLITQAG 117
KP+ TP+S ANL+ +AG
Sbjct: 178 KPAENTPLSLLYFANLVKEAG 198
>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase. This group
contains arabinose dehydrogenase (AraDH) and related
alcohol dehydrogenases. AraDH is a member of the medium
chain dehydrogenase/reductase family and catalyzes the
NAD(P)-dependent oxidation of D-arabinose and other
pentoses, the initial step in the metabolism of
d-arabinose into 2-oxoglutarate. Like the alcohol
dehydrogenases, AraDH binds a zinc in the catalytic
cleft as well as a distal structural zinc. AraDH forms
homotetramers as a dimer of dimers. AraDH replaces a
conserved catalytic His with replace with Arg, compared
to the canonical ADH site. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes, or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. A GxGxxG motif
after the first mononucleotide contact half allows the
close contact of the coenzyme with the ADH backbone.
The N-terminal catalytic domain has a distant homology
to GroES. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and have 2 tightly bound zinc atoms per
subunit, a catalytic zinc at the active site and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine, the ribose of
NAD, a serine, then the alcohol, which allows the
transfer of a hydride to NAD+, creating NADH and a
zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 340
Score = 26.4 bits (59), Expect = 9.8
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 174 ARALAKRLGC--LLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADA 231
A LA+RLG +L D E EV + G G D ++ D V + TL AA
Sbjct: 204 ALKLAERLGADHVLNASDDVVE-----EVRELTGGR-GADAVI--DFVGSDETLALAAKL 255
Query: 232 LYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRI-LTIAQ 290
L + G + Y HG L +S + E S + L T + ++V + ++ + I +
Sbjct: 256 LAKGGRYVIVGYGGHGRLPTSDLVPTEISVIGSLWGTRAEL-VEVVALAESGKVKVEITK 314
Query: 291 LMGEAINRTFEE 302
E N +
Sbjct: 315 FPLEDANEALDR 326
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.137 0.385
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,570,517
Number of extensions: 188402
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 57
Length of query: 310
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 216
Effective length of database: 4,232,491
Effective search space: 914218056
Effective search space used: 914218056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)