RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780409|ref|YP_003064822.1| ribose-phosphate
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
         (310 letters)



>gnl|CDD|179265 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 309

 Score =  558 bits (1440), Expect = e-160
 Identities = 204/310 (65%), Positives = 240/310 (77%), Gaps = 1/310 (0%)

Query: 1   MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
           MK+FAGN+N  LA++I  YL   LGKASV  FSD E+ VEI ENVRG+DVFI+QST  P 
Sbjct: 1   MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPT 60

Query: 61  NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
           ND LMELLIMIDA++R+SA RIT VIPYFGY RQDRK   R PI+AKLVANL+  AGADR
Sbjct: 61  NDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLETAGADR 120

Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180
           V+ +DLHA Q+QGFFDIP DNLY  PIL  DIK++N + NL+VVSPDVGGVVRARALAKR
Sbjct: 121 VLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKN-LENLVVVSPDVGGVVRARALAKR 179

Query: 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
           L   LAI+DKRR      EVMNIIG VEG+DCIL+DD++DT GTLC AA+AL E+GA SV
Sbjct: 180 LDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSV 239

Query: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300
            AY TH VLS  +IERIE S + ELV+TDSI  ++  K   KIR+L++A L+ EAI R  
Sbjct: 240 YAYATHPVLSGGAIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRIS 299

Query: 301 EERSISSLFD 310
            E S+SSLFD
Sbjct: 300 NEESVSSLFD 309


>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase.  In some
           systems, close homologs lacking enzymatic activity exist
           and perform regulatory functions. The model is
           designated subfamily rather than equivalog for this
           reason.
          Length = 308

 Score =  377 bits (970), Expect = e-105
 Identities = 168/312 (53%), Positives = 225/312 (72%), Gaps = 6/312 (1%)

Query: 1   MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIV-QSTSCP 59
           MKIF+G+SN+ LAQ++   L   LG   V  F D E++V I E+VRG+DVFI+ QSTS P
Sbjct: 1   MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAP 60

Query: 60  ANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGAD 119
            ND LMELLIMIDA++R+SA+ IT VIPY+GY RQD+K   R PISAKLVANL+  AGAD
Sbjct: 61  VNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLETAGAD 120

Query: 120 RVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAK 179
           RV+ +DLH+ Q+QGFFD+P DNLYA P+L   +K++    N +VVSPD GGV RA+ +A 
Sbjct: 121 RVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKIL-DNPVVVSPDAGGVERAKKVAD 179

Query: 180 RLGCLLAIVDKRREHP-GKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238
            LGC LAI+DKRR     ++EVMN++G VEGKD +++DDI+DTGGT+  AA+ L   GA 
Sbjct: 180 ALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAK 239

Query: 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298
            V A  THGV S  +IERI  + ++E+++T++I P +  K   K+ ++++A L+ EAI R
Sbjct: 240 RVIAAATHGVFSGPAIERIANAGVEEVIVTNTI-PHE--KHKPKVSVISVAPLIAEAIRR 296

Query: 299 TFEERSISSLFD 310
                S+SSLFD
Sbjct: 297 IHNNESVSSLFD 308


>gnl|CDD|179893 PRK04923, PRK04923, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 319

 Score =  374 bits (961), Expect = e-104
 Identities = 171/309 (55%), Positives = 226/309 (73%), Gaps = 2/309 (0%)

Query: 3   IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62
           +F+GN+N+ LAQ IC  L   +GKA VT FSD EV VEI E+VR ++VF++Q T  P+ +
Sbjct: 9   VFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAE 68

Query: 63  YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKP-SPRTPISAKLVANLITQAGADRV 121
            LMELL++IDA++R+SA  +T VIPYFGY RQDR+  S R PI+AK+ A +I+  GADRV
Sbjct: 69  NLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRV 128

Query: 122 IMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181
           + +DLHA Q+QGFFD+P DN+YA P+L  DI       NL+VVSPDVGGVVRARA+AKRL
Sbjct: 129 LTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRL 188

Query: 182 G-CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
               LAI+DKRR       VMNIIG V+GK C+L+DD+VDT GTLC AA AL ++GAL V
Sbjct: 189 DDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKV 248

Query: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300
            AYITH VLS  +++ I  S++ ELV+TD+I  ++  ++ AKIR L++A+L+ E I R  
Sbjct: 249 VAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIA 308

Query: 301 EERSISSLF 309
              S+SSL+
Sbjct: 309 FGESVSSLY 317


>gnl|CDD|177997 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
          Length = 302

 Score =  369 bits (948), Expect = e-103
 Identities = 155/301 (51%), Positives = 210/301 (69%), Gaps = 3/301 (0%)

Query: 12  LAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMI 71
           L+QEI  YL   LGK ++  F+D E++V++ E+VRG DVF+VQ T  PAN+ LMELLIMI
Sbjct: 3   LSQEIACYLGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMI 62

Query: 72  DAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQV 131
           DA RR+SA+RIT VIPYFGY R DRK   R  I+AKLVANLIT+AGADRV+  DLH+GQ 
Sbjct: 63  DACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQS 122

Query: 132 QGFFDIPTDNLYALPILERDIKERNDISN-LMVVSPDVGGVVRARALAKRLGCL-LAIVD 189
            G+FDIP D++Y  P++   +  +   S  L+VVSPDVGGV RARA AK+L    LAIVD
Sbjct: 123 MGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIVD 182

Query: 190 KRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVL 249
           KRR+     EVMN+IG V+GK  I++DD++DT GT+   A  L+++GA  V A  TH V 
Sbjct: 183 KRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVF 242

Query: 250 SSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLF 309
           S  +IER+     +E+++T++I P        ++ +L++A L+GE I R  ++ S+SS+F
Sbjct: 243 SPPAIERLSSGLFQEVIVTNTI-PVSEKNYFPQLTVLSVANLLGETIWRVHDDCSVSSIF 301

Query: 310 D 310
           D
Sbjct: 302 D 302


>gnl|CDD|179476 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 330

 Score =  345 bits (887), Expect = 7e-96
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 3/310 (0%)

Query: 1   MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
           +++F+G+SN  LAQE+  YL   LG      F+D E++V+I E++RG DV+++Q T  P 
Sbjct: 22  LRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPV 81

Query: 61  NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
           ND+LMELLIM+DA RR+SAR+IT VIPY+GY R DRK + R  I+AKLVANLIT+AGADR
Sbjct: 82  NDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADR 141

Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180
           V+ +DLH+ Q+QG+FDIP D++Y  P+L   +  +N + +++VVSPDVGGV RARA AK+
Sbjct: 142 VLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKN-LEDIVVVSPDVGGVARARAFAKK 200

Query: 181 L-GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239
           L    LAI+DKRR+     EV+N+IG V+GK  IL+DD++DTGGT+C  A  L ++GA  
Sbjct: 201 LNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQ 260

Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299
           V A  TH V S  +IER+     +E+++T++I P    +   ++++L++A ++GEAI R 
Sbjct: 261 VYACATHAVFSPPAIERLSSGLFEEVIVTNTI-PVPEERRFPQLKVLSVANMLGEAIWRI 319

Query: 300 FEERSISSLF 309
            EE S+SS+F
Sbjct: 320 HEESSVSSMF 329


>gnl|CDD|167353 PRK02269, PRK02269, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 320

 Score =  342 bits (879), Expect = 6e-95
 Identities = 160/314 (50%), Positives = 218/314 (69%), Gaps = 6/314 (1%)

Query: 1   MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
           +K+FA +SN+ LA+++   +   LGK+SV  FSD E+ V I E++RG  VFI+QSTS P 
Sbjct: 6   LKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPV 65

Query: 61  NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
           ND LME+LIM+DA++R+SA  I  V+PY+GY RQDRK   R PI++KLVAN++  AG DR
Sbjct: 66  NDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDR 125

Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERN-DISNLMVVSPDVGGVVRARALAK 179
           ++ +DLHA Q+QGFFDIP D+L   P++      R     +++VVSPD GGV RAR LA+
Sbjct: 126 LLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQ 185

Query: 180 RLGCLLAIVDKRREHPGKI--EVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237
            L   +AI+DKRR        EVMNIIG V+GK CILIDD++DT GT+C AADAL E GA
Sbjct: 186 FLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGA 245

Query: 238 LSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ-PTDLVKSSAKIRILTIAQLMGEAI 296
             V A  TH VLS  +++ I+KS +++LV+ D+I  P +  +   KI  ++IA L+GEAI
Sbjct: 246 TEVYASCTHPVLSGPALDNIQKSAIEKLVVLDTIYLPEE--RLIDKIEQISIADLLGEAI 303

Query: 297 NRTFEERSISSLFD 310
            R  E+R +S LF+
Sbjct: 304 IRIHEKRPLSPLFE 317


>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 304

 Score =  325 bits (835), Expect = 1e-89
 Identities = 136/303 (44%), Positives = 200/303 (66%), Gaps = 6/303 (1%)

Query: 12  LAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMI 71
           LA+E+   L   +   +   F++ E++V   E+VRG D F++QS + P N +LME LIMI
Sbjct: 1   LAEEVAKELGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMI 60

Query: 72  DAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQV 131
           DA++R+SA+RIT V+P++ Y RQD+K   R PISA+LVA+L   AGADR++ +DLH  Q+
Sbjct: 61  DALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQI 120

Query: 132 QGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG-CLLAIVDK 190
           QGFFD P D+L+A+P+L   ++++ D+ N+ VVSPD G V  A   A RLG   LA + K
Sbjct: 121 QGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHK 180

Query: 191 RR--EHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV 248
            R    P ++    ++G VEG+ C+L+DD++DTGGT+ GA  AL E GA  V    THGV
Sbjct: 181 TRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGV 240

Query: 249 LSSSSIERIEKSKMKELVITDSI-QPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISS 307
           LS  + ER++    +E+V+TD++  P +  K   K+ +L+IA L+  AI   FE+ S++S
Sbjct: 241 LSGPAAERLKNCGAREVVVTDTLPIPEE--KRFDKLTVLSIAPLLARAIREVFEDGSVTS 298

Query: 308 LFD 310
           LFD
Sbjct: 299 LFD 301


>gnl|CDD|185478 PTZ00145, PTZ00145, phosphoribosylpyrophosphate synthetase;
           Provisional.
          Length = 439

 Score =  312 bits (802), Expect = 5e-86
 Identities = 140/316 (44%), Positives = 209/316 (66%), Gaps = 9/316 (2%)

Query: 3   IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62
           +F+G+SN  L++ I D+L T LG+  +  F+D EV ++  E++RG+DV+I+Q T  P N+
Sbjct: 122 LFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNE 181

Query: 63  YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122
            L+ELL+MI   RR+SA++IT VIPY+GY RQDRK S R PISA  VA +I   G DRV+
Sbjct: 182 NLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVV 241

Query: 123 MLDLHAGQVQGFFD--IPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180
            +DLH+GQ+QGFF   +P DNL A  ++  D   + D+   ++VSPD GGV RAR     
Sbjct: 242 AIDLHSGQIQGFFGPRVPVDNLEA-QLIGLDYFTKKDLYKPVIVSPDAGGVYRARKFQDG 300

Query: 181 LG------CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYE 234
           L       C +A++ K+R  P +IE M+++G V   D I++DD++DT GTLC AA  L +
Sbjct: 301 LNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKK 360

Query: 235 QGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGE 294
            GA  V A+ THG+ S  +IERIE S ++E+V+TD+++    + S  KI  L+++ L+ +
Sbjct: 361 HGARRVFAFATHGLFSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVAD 420

Query: 295 AINRTFEERSISSLFD 310
           AI R  ++ S++ LF+
Sbjct: 421 AIRRIHQKESLNDLFN 436


>gnl|CDD|179425 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 323

 Score =  312 bits (801), Expect = 7e-86
 Identities = 138/310 (44%), Positives = 204/310 (65%), Gaps = 4/310 (1%)

Query: 1   MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
           +K+F+ NSN  +A++I       LGK S   FSD E+ + I E+VRG+D++I+QSTS P 
Sbjct: 10  IKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPV 69

Query: 61  NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
           ND+L ELLIMIDA +R+SA  +  V+PYFGY RQDR   PR PI+AKLVAN++ +AG DR
Sbjct: 70  NDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDR 129

Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDI-SNLMVVSPDVGGVVRARALAK 179
           V+ LDLHA QVQGFFDIP DNL+ +P+  +   ++    S+++VVSP   G+ RAR+LA+
Sbjct: 130 VLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAE 189

Query: 180 RLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239
            L   +AI+D  ++   + E   IIG V GK  ILIDDI++TG T   AA  +  +GA  
Sbjct: 190 YLDAPIAIIDYAQDDSEREEGY-IIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATE 248

Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299
           + A  +HG+ +  + E +E + +KE+++TDS+   +  +    +  L+ ++L+ +AI R 
Sbjct: 249 IYAVASHGLFAGGAAEVLENAPIKEILVTDSVATKE--RVPKNVTYLSASELIADAIIRI 306

Query: 300 FEERSISSLF 309
            E + +S LF
Sbjct: 307 HERKPLSPLF 316


>gnl|CDD|179062 PRK00553, PRK00553, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 332

 Score =  268 bits (687), Expect = 1e-72
 Identities = 126/311 (40%), Positives = 194/311 (62%), Gaps = 5/311 (1%)

Query: 3   IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62
           IF+ +  + L   IC  L    G+  +  F+D E ++   E+VR +DV I QST  P ND
Sbjct: 12  IFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVND 71

Query: 63  YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122
            LMELLI IDA++R SA+ IT ++PY+GY RQDRK + R PI++KLVA+L+T+AG  RV 
Sbjct: 72  SLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVT 131

Query: 123 MLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG 182
           + D+H+ Q QGFFDIP D L    +    + E     +L+VVSPD GGV RAR +A+ L 
Sbjct: 132 LTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLE 191

Query: 183 CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242
             LAI+DKRR      E +N++G+V+ K+C+++DD++DTGGT+  AA  L +Q A  V  
Sbjct: 192 LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCV 251

Query: 243 YITHGVLSSSSIERIEKSKMKELV----ITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298
             THG+ + ++I+  +++  K+L+    +++SI  T   +   + +++ +A L  E +  
Sbjct: 252 MATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQTKF-EKKPQFKVVDLAHLYEEVLLC 310

Query: 299 TFEERSISSLF 309
                SIS+++
Sbjct: 311 YANGGSISAIY 321


>gnl|CDD|179172 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 285

 Score =  205 bits (525), Expect = 8e-54
 Identities = 101/299 (33%), Positives = 172/299 (57%), Gaps = 16/299 (5%)

Query: 2   KIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAN 61
            I  G++++ LA E+   L+T L       F D E++V I   + GEDV I+ +T  P +
Sbjct: 1   MIIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTY-PQD 59

Query: 62  DYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRV 121
           + L+ELL++IDA+R   A+ IT VIPY GY RQD++  P  PISA+ +A +I+    DR+
Sbjct: 60  ENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYY-DRI 118

Query: 122 IMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181
           I +++H   +  FF IP  NL A P++   I   + + + +V++PD G +  A+  A+ L
Sbjct: 119 ITINIHEPSILEFFPIPFINLDAAPLIAEYIG--DKLDDPLVLAPDKGALELAKEAAEIL 176

Query: 182 GCLLAIVDKRREHPGKIE--VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239
           GC    ++K R  P ++E    N+   V+GKD +++DDI+ TGGT+  A   L EQGA  
Sbjct: 177 GCEYDYLEKTRISPTEVEIAPKNL--DVKGKDVLIVDDIISTGGTMATAIKILKEQGAKK 234

Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298
           V     H VL   +I ++  + + E+++TD++         +++  +++A L+ + + +
Sbjct: 235 VYVACVHPVLVGDAILKLYNAGVDEIIVTDTL--------ESEVSKISVAPLIADLLKK 285


>gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase;
           Provisional.
          Length = 382

 Score =  125 bits (317), Expect = 1e-29
 Identities = 91/318 (28%), Positives = 153/318 (48%), Gaps = 38/318 (11%)

Query: 26  KASVTYFSDREVFVEIGENVRGEDVFIVQST---SC-----------PANDYLMELLIMI 71
            A    FS+ E   EI E+VRG+D++I+Q     S              +D+  +L   I
Sbjct: 56  PAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTI 115

Query: 72  DAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQV 131
           DA+R   ARRIT ++P+    RQ ++   R  +   L    + + G D +I  D H  ++
Sbjct: 116 DAIR-GKARRITVIMPFLYESRQHKRKG-RESLDCALALQELEELGVDNIITFDAHDPRI 173

Query: 132 QGFFDIPT-DNLYA----LPILERDIKE-RNDISNLMVVSPDVGGVVRARALAKRLGCLL 185
           +    +   +NLY     +  L ++ K+   D  +LMV+SPD G + RA+  A  LG  L
Sbjct: 174 ENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVDL 233

Query: 186 AIVDKRREHP----GK--IEVMNIIGK-VEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238
            +  KRR++     G+  I     +G+ VEGKD +++DD++ +GG++  AA  L  +GA 
Sbjct: 234 GLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAK 293

Query: 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLV------KSSAKIRILTIAQLM 292
            +    T G   ++ +E+ +  K  E    D I  T+LV       S      + +++L+
Sbjct: 294 KIIVAATFG-FFTNGLEKFD--KAYEEGYFDRIIGTNLVYHPEELLSKPWYIEVDMSKLI 350

Query: 293 GEAINRTFEERSISSLFD 310
              I+    + S+S L D
Sbjct: 351 ARIIDALNHDVSLSKLLD 368


>gnl|CDD|180877 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
           Provisional.
          Length = 301

 Score =  116 bits (294), Expect = 6e-27
 Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 10/274 (3%)

Query: 3   IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62
           + A   N   A  +   L   +G+  +  F D E +V +   V G  V +V S   P ++
Sbjct: 5   LLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DE 63

Query: 63  YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122
            L+ LL   +A R   ARR+  V PY  Y RQD    P   IS +  A L++    DR++
Sbjct: 64  KLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLS-GSFDRLV 122

Query: 123 MLDLHAGQV---QGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAK 179
            +D H  +       + IP   L A P +   I  R  +   +++ PD        A+A+
Sbjct: 123 TVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWI--RAHVPRPLLIGPDEESEQWVAAVAE 180

Query: 180 RLGCLLAIVDKRR--EHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237
           R G   A++ K R  +   +I + +      G+  +L+DDIV TG TL  AA  L   GA
Sbjct: 181 RAGAPHAVLRKTRHGDRDVEISLPDAA-PWAGRTPVLVDDIVSTGRTLIEAARQLRAAGA 239

Query: 238 LSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271
            S    + H + +  +   +  + +  +V TD++
Sbjct: 240 ASPDCVVVHALFAGDAYSALAAAGIARVVSTDTV 273


>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
          Length = 326

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 35/283 (12%)

Query: 37  VFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYF---GYCR 93
           +F+     +RG+ V  + S S P    + E L +I A+ +      T V+P+F      R
Sbjct: 56  LFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSER 113

Query: 94  QDRKPSPRTPIS-AKLVANL-ITQAGADRVIMLDLHAGQVQGFFDIPTDNLYAL-----P 146
            +R+    T  + A++++N+ I++ G   +++ D+HA Q + +F    DN+        P
Sbjct: 114 VEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFG---DNVLPCFESGIP 170

Query: 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLA-----IVDKRREHPGKIEVM 201
           +L++ +++  D  N+++  PD G         KR           +  K RE   +I  +
Sbjct: 171 LLKKRLQQLPDSDNIVIAFPDDGA-------WKRFHKQFEHFPMVVCTKVREGDKRIVRI 223

Query: 202 NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSK 261
              G   G+  +++DD+V +GGTL      L   GA  V+AY+THGV  + S ER     
Sbjct: 224 KE-GNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDN 282

Query: 262 MKE------LVITDSI-QPTDLVKSSAKIRILTIAQLMGEAIN 297
                      ITDS  Q    V+  A   +L++A  + +A+ 
Sbjct: 283 GGPEAGFAYFWITDSCPQTVKAVRGKAPFEVLSLAGSIADALQ 325


>gnl|CDD|177882 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
          Length = 189

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241
            V+GK  +L++DIVDTG TL      L  +GA SV+
Sbjct: 94  DVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129


>gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
           Provisional.
          Length = 200

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 21/97 (21%)

Query: 157 DISNLMVVSPDV------GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNI------- 203
           D+        DV       GV  A  +A  LG  LAI      HP K +           
Sbjct: 77  DMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIY-----HPKKWDHGEGEKKTGSF 131

Query: 204 ---IGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237
                 VEGK C+++DD++ +G T+    + L E G 
Sbjct: 132 SRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGG 168


>gnl|CDD|161762 TIGR00201, comF, comF family protein.  This protein is found in
           species that do (Bacillus subtilis, Haemophilus
           influenzae) or do not (E. coli, Borrelia burgdorferi)
           have described systems for natural transformation with
           exogenous DNA. It is involved in competence for
           transformation in Bacillus subtilis.
          Length = 190

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
            +G++ +L+DD+V TG TL   A  L E GA SV
Sbjct: 150 FQGRNIVLVDDVVTTGATLHEIARLLLELGAASV 183


>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
          Length = 178

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)

Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRR----EHPGKIEVMNI-------------- 203
           ++V+P+  G+  A AL++RLG    +  K R    + P   EV++I              
Sbjct: 55  VLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGAD 114

Query: 204 IGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244
             K++GK   ++DD+V TGGTL      +   G   V A  
Sbjct: 115 AEKLKGKRVAIVDDVVSTGGTLTALERLVERAGG-QVVAKA 154


>gnl|CDD|179036 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
          Length = 202

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIG-KVEGKDCILIDDIVD 220
           +V  P  GG+  A A+A+ L      V  R+E     E   I G ++ GK  ++++D++ 
Sbjct: 67  VVAGPATGGIPLAAAVARALDLPAIFV--RKEAKDHGEGGQIEGRRLFGKRVLVVEDVIT 124

Query: 221 TGGTLCGAADALYEQGA 237
           TGG++  A +A+   GA
Sbjct: 125 TGGSVLEAVEAIRAAGA 141


>gnl|CDD|179963 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
           uracil phosphoribosyltransferase; Provisional.
          Length = 176

 Score = 37.0 bits (87), Expect = 0.005
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 17/103 (16%)

Query: 150 RDIKERN-DISNLMVVSPDVGGVVRARALAKRLGCL------LAIVD---------KRRE 193
            +I ERN  + NL++V     GV  A  LA+RL  L      +  +D         K+  
Sbjct: 21  HEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGL 80

Query: 194 HPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQG 236
           HP +++  +I   +EGK  IL+DD++ TG T+  A DAL++ G
Sbjct: 81  HP-QVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYG 122


>gnl|CDD|179411 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
          Length = 175

 Score = 36.2 bits (85), Expect = 0.011
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGK-IEV------------MNIIGKVE 208
            +V  +  G +   ALA +LG     V K  + P + I              ++      
Sbjct: 54  KIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKP 113

Query: 209 GKDCILIDDIVDTGGTLCGAADALYEQGA 237
           G   +++DD++ TGGTL  A   L   GA
Sbjct: 114 GDRVLIVDDLLATGGTLEAAIKLLERLGA 142


>gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
          Length = 170

 Score = 36.0 bits (83), Expect = 0.014
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT 221
           +V    VGGV  A A++   G   AI+ K  +  GK  +  IIG V+GK  +L++D+  +
Sbjct: 59  VVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGL--IIGDVKGKRVLLVEDVTTS 116

Query: 222 GGTLCGAADALYEQGALSVTAYIT 245
           GG+     + L   GA+ V   +T
Sbjct: 117 GGSALYGIEQLRAAGAV-VDDVVT 139


>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
           Provisional.
          Length = 181

 Score = 35.2 bits (82), Expect = 0.019
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
           ++G+  +++DDI+D G TL    D   E GA  V
Sbjct: 95  LKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEV 128


>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
          Length = 187

 Score = 34.6 bits (80), Expect = 0.029
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 204 IGKVE-GKDCILIDDIVDTGGTLCGAADALYEQGA 237
           +G VE G+  ++IDD++ TGGTLC A + L   GA
Sbjct: 119 VGAVEPGERALVIDDLIATGGTLCAAINLLERAGA 153


>gnl|CDD|181678 PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase;
           Validated.
          Length = 156

 Score = 34.5 bits (80), Expect = 0.036
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)

Query: 169 GGVVRARALAKRLGCLL----AIV----DKRREHPGKIEVMNIIGKVE--GKDCILIDDI 218
           GG+V A  LA+ LG  L     I     D + E       + ++ + E  G+  +++DD+
Sbjct: 41  GGLVPAAILARELGIRLVDTVCISSYDHDNQGE-------LKVLKRAEGDGEGFLVVDDL 93

Query: 219 VDTGGTL 225
           VDTGGT 
Sbjct: 94  VDTGGTA 100


>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase.  The conserved
           Lys (K) residue at position 101 of the seed alignment
           has been proposed as the active site for the enzyme.
          Length = 173

 Score = 32.8 bits (75), Expect = 0.13
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 162 MVVSPDVGGVVRARALAKRL-----GCLLAIVDKRREHPGKIEVMNIIGKV-EGKDCILI 215
           ++  P +GG+  A A++ +L        L     R+E     E  NI G++ EG   +++
Sbjct: 57  VIAGPALGGIPIATAVSVKLAKPGGDIPLCFN--RKEAKDHGEGGNIEGELLEGDKVVVV 114

Query: 216 DDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKS 260
           +D++ TG ++  A + +   G       I       S+ +  EK 
Sbjct: 115 EDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKE 159


>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
          Length = 227

 Score = 32.3 bits (74), Expect = 0.15
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243
             V+G+   ++DD+V TG T+   A  L   GA SV  +
Sbjct: 183 LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221


>gnl|CDD|130270 TIGR01203, HGPRTase, hypoxanthine phosphoribosyltransferase.
           Sequence differences as small as a single residue can
           affect whether members of this family act on
           hypoxanthine and guanine or hypoxanthine only. The
           designation of this model as equivalog reflects
           hypoxanthine specificity and does not reflect whether or
           not guanine can replace hypoxanthine.
          Length = 166

 Score = 32.2 bits (74), Expect = 0.17
 Identities = 11/19 (57%), Positives = 17/19 (89%)

Query: 207 VEGKDCILIDDIVDTGGTL 225
           ++GKD ++++DIVDTG TL
Sbjct: 82  IKGKDVLIVEDIVDTGLTL 100


>gnl|CDD|178885 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
          Length = 209

 Score = 31.6 bits (73), Expect = 0.24
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242
           ++ +  I++D ++ TGG+   A D L ++GA ++  
Sbjct: 122 IDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKV 157


>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
          Length = 475

 Score = 30.9 bits (70), Expect = 0.38
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 192 REHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS 251
           RE   K+++  + G VEGK  +++DD +  G T       L E GA  V   I+   ++ 
Sbjct: 331 REQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPITH 390

Query: 252 SSIERIEKSKMKELVITD-SIQPTDLVKSSAKIRILTIAQLMGEAINRTFEE 302
                I+ S  +EL+ ++ S++    +  +  +  L+   L+ E I R +E 
Sbjct: 391 PCFYGIDTSTKEELIASNHSVEEIRQLIGADSLAFLSQEGLL-EGIGRPYES 441


>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
          Length = 471

 Score = 31.1 bits (70), Expect = 0.38
 Identities = 24/78 (30%), Positives = 34/78 (43%)

Query: 192 REHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS 251
           RE   K+++  + G VEGK  ++IDD +  G T       L E GA  V   I    L  
Sbjct: 331 REQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKY 390

Query: 252 SSIERIEKSKMKELVITD 269
                I+    KEL+  +
Sbjct: 391 PCFYGIDIQTRKELIAAN 408


>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase.  that includes
           uracil phosphoribosyltransferase, uridine kinases, and
           other, uncharacterized proteins.
          Length = 207

 Score = 31.1 bits (71), Expect = 0.42
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK 259
           ++ +  I++D ++ TGGT+  A D L ++GA  +   +   V +   IE +EK
Sbjct: 120 IDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIK--VLSIVAAPEGIEAVEK 170


>gnl|CDD|162319 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
           family.  This model represents a distinct clade of
           orotate phosphoribosyltransferases. Members include the
           experimentally determined example from Thermus aquaticus
           and additional examples from Caulobacter crescentus,
           Helicobacter pylori, Mesorhizobium loti, and related
           species.
          Length = 187

 Score = 30.9 bits (70), Expect = 0.43
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)

Query: 163 VVSPDVGGV----VRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDI 218
           +V P +GGV      AR L+ R     +I  +R    G +++        G+  + ++D+
Sbjct: 62  IVGPAMGGVILGYEVARQLSVR-----SIFAEREG--GGMKLRRGFAVKPGEKFVAVEDV 114

Query: 219 VDTGGTLCGAADALYEQGALSVTA 242
           V TGG+L  A  A+  QG   V  
Sbjct: 115 VTTGGSLLEAIRAIEGQGGQVVGL 138


>gnl|CDD|184342 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional.
          Length = 176

 Score = 30.1 bits (68), Expect = 0.76
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 208 EGKDCILIDDIVDTGGTLCGAADALYEQGA 237
           EG++ ++++DI  TG +   A +AL E GA
Sbjct: 106 EGEEVVVLEDIATTGQSAVDAVEALREAGA 135


>gnl|CDD|185481 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
           Provisional.
          Length = 241

 Score = 29.7 bits (67), Expect = 0.85
 Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 196 GKIEVM-NIIGKVEGKDCILIDDIVDTGGTL 225
           GK+E++ + +  ++ K  ++++DI+DTG TL
Sbjct: 136 GKLEIVSDDLSCLKDKHVLIVEDIIDTGNTL 166


>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
           In Bacillus, a highly homologous protein to
           methylmalonic acid semialdehyde dehydrogenase, groups
           out from the main MMSDH clade with Listeria and
           Sulfolobus. This Bacillus protein has been suggested to
           be located in an iol operon and/or involved in
           myo-inositol catabolism, converting malonic semialdehyde
           to acetyl CoA ad CO2. The preceeding enzymes responsible
           for valine catabolism are present in Bacillus, Listeria,
           and Sulfolobus.
          Length = 477

 Score = 29.8 bits (67), Expect = 1.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 97  KPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQ 132
           KPS + P +A  +A L ++AGA   ++  +H  +  
Sbjct: 170 KPSEKVPSAAVKLAELFSEAGAPDGVLNVVHGDKEA 205


>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
            This model represents the puring operon repressor PurR
           of low-GC Gram-positive bacteria. This homodimeric
           repressor contains a large region homologous to
           phosphoribosyltransferases and is inhibited by
           5-phosphoribosyl 1-pyrophosphate.
          Length = 268

 Score = 29.4 bits (66), Expect = 1.3
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 24/109 (22%)

Query: 142 LYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRRE-------- 193
           + A    ER+I          V++    G+  A A+A  L   L IV K  +        
Sbjct: 119 ILASVFAEREID--------AVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVS 170

Query: 194 ------HPGKIEVMNIIGKV--EGKDCILIDDIVDTGGTLCGAADALYE 234
                    +I+ M++  +    G   ++IDD +  GGT+ G  + L E
Sbjct: 171 INYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDE 219


>gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein
           family.  The model describes the exopolysaccharide
           transport protein family in bacteria. The transport
           protein is part of a large genetic locus which is
           associated with exopolysaccharide (EPS) biosynthesis.
           Detailed molecular characterization and gene fusion
           analysis revealed atleast seven gene products are
           involved in the overall regulation, which among other
           things, include exopolysaccharide biosynthesis, property
           of conferring virulence and exopolysaccharide export.
          Length = 754

 Score = 29.2 bits (65), Expect = 1.5
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 96  RKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPT-------DNLYALPIL 148
           RK +    + A+ V+ L+      R ++LDL A        + +         L A P +
Sbjct: 586 RKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITELLASPAM 645

Query: 149 ERDIKERNDISNLMVV-SPDVGGVVRARALAKRLGCLLAIV 188
              +      S+ +VV       V   RA A+    +L + 
Sbjct: 646 FSLVIHARLYSDCVVVDVGTADPVRDMRAAARLAIIMLLVT 686


>gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional.
          Length = 249

 Score = 28.0 bits (63), Expect = 3.1
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 15/66 (22%)

Query: 105 SAKLV----ANLITQAGADRVIMLD--LH--------AGQVQGFFDIPTDNLYALPILER 150
           S+KLV    A  + QAG  RVIM D  +H        A ++  F+ I   N+   P L  
Sbjct: 38  SSKLVYSYFAVALAQAGF-RVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRA 96

Query: 151 DIKERN 156
            I+E  
Sbjct: 97  AIREEG 102


>gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase;
          Provisional.
          Length = 260

 Score = 27.8 bits (62), Expect = 3.3
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 4  FAGNSNRNLAQEICDYLHTSLGKASVTYFSD-------REVFVEIGENVRGEDVFI 52
          F  NSN   A +I + L    G  +  Y  +       +E+F +I E+    D FI
Sbjct: 37 FTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFDRVDFFI 92


>gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase.  A phylogenetic
           analysis suggested omitting the bi-directional best hit
           homologs from the spirochetes from the seed for this
           model and making only tentative predictions of adenine
           phosphoribosyltransferase function for this lineage.
          Length = 169

 Score = 28.0 bits (63), Expect = 3.5
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 25/110 (22%)

Query: 143 YALPILERDIKERN-DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGK---- 197
           + + +L    K+ N D     +V P+  G +   ALA +LG     V K  + PG+    
Sbjct: 33  FLIDLLVERYKDANIDY----IVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISA 88

Query: 198 ------------IEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQ 235
                       I    I     G+  +++DD++ TGGT   A D L  +
Sbjct: 89  SYDLEYGKDQLEIHKDAIK---PGQRVLIVDDLLATGGTA-EATDELIRK 134


>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
          Length = 254

 Score = 27.7 bits (61), Expect = 3.7
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMN 202
           +PIL  D+    ++  L+ V+P  G  +R+  L +R+  LL ++  +RE  GKI V++
Sbjct: 149 IPILS-DV----EVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE--GKIIVID 199


>gnl|CDD|177917 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
          Length = 498

 Score = 27.7 bits (62), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 97  KPSPRTPISAKLVANLITQAG 117
           KPS  TP++A   A L  QAG
Sbjct: 194 KPSELTPLTALAAAELALQAG 214


>gnl|CDD|185321 PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase;
           Provisional.
          Length = 178

 Score = 27.3 bits (60), Expect = 5.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 207 VEGKDCILIDDIVDTGGTL 225
           + GKD ++++DI+D+G TL
Sbjct: 90  IRGKDVLIVEDIIDSGNTL 108


>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
           dehydrogenase.  It seems reasonably certain then, that
           this enzyme catalyzes the NAD-dependent oxidation of
           phosphonoacetaldehyde to phosphonoacetate, bridging the
           metabolic gap between PhnW and PhnA. We propose the name
           phosphonoacetaldehyde dehydrogenase and the gene symbol
           PhnY for this enzyme.
          Length = 472

 Score = 27.1 bits (60), Expect = 6.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 97  KPSPRTPISAKLVANLITQAG 117
           KPS +TP+SA  +A+++ +AG
Sbjct: 173 KPSEKTPLSALYLADILYEAG 193


>gnl|CDD|162532 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase.  SSADH
           enzyme belongs to the aldehyde dehydrogenase family
           (pfam00171), sharing a common evolutionary origin and
           enzymatic mechanism with lactaldehyde dehydrogenase.
           Like in lactaldehyde dehydrogenase and succinate
           semialdehyde dehydrogenase, the mammalian catalytic
           glutamic acid and cysteine residues are conserved in all
           the enzymes of this family (PS00687, PS00070).
          Length = 448

 Score = 27.0 bits (60), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 97  KPSPRTPISAKLVANLITQAG 117
           KP+ +TP+SA  +A L  QAG
Sbjct: 151 KPAEQTPLSALALARLAEQAG 171


>gnl|CDD|184614 PRK14314, glmM, phosphoglucosamine mutase; Provisional.
          Length = 450

 Score = 26.8 bits (60), Expect = 7.7
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 8/48 (16%)

Query: 118 ADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVS 165
           ADR+I++D     V G      D + A  I   D+K+R  +    +V+
Sbjct: 247 ADRLIVVDEKGHIVDG------DQIMA--ICATDLKKRGALPKNTLVA 286


>gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase.
          Length = 398

 Score = 26.7 bits (59), Expect = 8.9
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 230 DALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS---IQPTDLVKSSAKIRIL 286
           +  Y+     +       V    + E I   K   +   D    IQ T   K+S K+ +L
Sbjct: 306 EECYKNLKKLLGLDGLAAVNGVEAPEGINLPKEHSVSKMDDKIIIQET-GEKTSNKLIVL 364

Query: 287 TIAQLMGEAINRTF 300
            ++ L G A  RT 
Sbjct: 365 DLSSLNGGAPGRTR 378


>gnl|CDD|180357 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
          Length = 233

 Score = 26.6 bits (59), Expect = 9.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 202 NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237
            ++  +EG+   LIDD++ +G ++      L   G 
Sbjct: 147 RMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGI 182


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,007,995
Number of extensions: 328314
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 60
Length of query: 310
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 217
Effective length of database: 3,984,929
Effective search space: 864729593
Effective search space used: 864729593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)