RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] (310 letters) >gnl|CDD|179265 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase; Provisional. Length = 309 Score = 558 bits (1440), Expect = e-160 Identities = 204/310 (65%), Positives = 240/310 (77%), Gaps = 1/310 (0%) Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60 MK+FAGN+N LA++I YL LGKASV FSD E+ VEI ENVRG+DVFI+QST P Sbjct: 1 MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPT 60 Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120 ND LMELLIMIDA++R+SA RIT VIPYFGY RQDRK R PI+AKLVANL+ AGADR Sbjct: 61 NDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLETAGADR 120 Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 V+ +DLHA Q+QGFFDIP DNLY PIL DIK++N + NL+VVSPDVGGVVRARALAKR Sbjct: 121 VLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKN-LENLVVVSPDVGGVVRARALAKR 179 Query: 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 L LAI+DKRR EVMNIIG VEG+DCIL+DD++DT GTLC AA+AL E+GA SV Sbjct: 180 LDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSV 239 Query: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 AY TH VLS +IERIE S + ELV+TDSI ++ K KIR+L++A L+ EAI R Sbjct: 240 YAYATHPVLSGGAIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRIS 299 Query: 301 EERSISSLFD 310 E S+SSLFD Sbjct: 300 NEESVSSLFD 309 >gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason. Length = 308 Score = 377 bits (970), Expect = e-105 Identities = 168/312 (53%), Positives = 225/312 (72%), Gaps = 6/312 (1%) Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIV-QSTSCP 59 MKIF+G+SN+ LAQ++ L LG V F D E++V I E+VRG+DVFI+ QSTS P Sbjct: 1 MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAP 60 Query: 60 ANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGAD 119 ND LMELLIMIDA++R+SA+ IT VIPY+GY RQD+K R PISAKLVANL+ AGAD Sbjct: 61 VNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLETAGAD 120 Query: 120 RVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAK 179 RV+ +DLH+ Q+QGFFD+P DNLYA P+L +K++ N +VVSPD GGV RA+ +A Sbjct: 121 RVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKIL-DNPVVVSPDAGGVERAKKVAD 179 Query: 180 RLGCLLAIVDKRREHP-GKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238 LGC LAI+DKRR ++EVMN++G VEGKD +++DDI+DTGGT+ AA+ L GA Sbjct: 180 ALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAK 239 Query: 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298 V A THGV S +IERI + ++E+++T++I P + K K+ ++++A L+ EAI R Sbjct: 240 RVIAAATHGVFSGPAIERIANAGVEEVIVTNTI-PHE--KHKPKVSVISVAPLIAEAIRR 296 Query: 299 TFEERSISSLFD 310 S+SSLFD Sbjct: 297 IHNNESVSSLFD 308 >gnl|CDD|179893 PRK04923, PRK04923, ribose-phosphate pyrophosphokinase; Provisional. Length = 319 Score = 374 bits (961), Expect = e-104 Identities = 171/309 (55%), Positives = 226/309 (73%), Gaps = 2/309 (0%) Query: 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62 +F+GN+N+ LAQ IC L +GKA VT FSD EV VEI E+VR ++VF++Q T P+ + Sbjct: 9 VFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAE 68 Query: 63 YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKP-SPRTPISAKLVANLITQAGADRV 121 LMELL++IDA++R+SA +T VIPYFGY RQDR+ S R PI+AK+ A +I+ GADRV Sbjct: 69 NLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRV 128 Query: 122 IMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181 + +DLHA Q+QGFFD+P DN+YA P+L DI NL+VVSPDVGGVVRARA+AKRL Sbjct: 129 LTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRL 188 Query: 182 G-CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 LAI+DKRR VMNIIG V+GK C+L+DD+VDT GTLC AA AL ++GAL V Sbjct: 189 DDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKV 248 Query: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 AYITH VLS +++ I S++ ELV+TD+I ++ ++ AKIR L++A+L+ E I R Sbjct: 249 VAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIA 308 Query: 301 EERSISSLF 309 S+SSL+ Sbjct: 309 FGESVSSLY 317 >gnl|CDD|177997 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase. Length = 302 Score = 369 bits (948), Expect = e-103 Identities = 155/301 (51%), Positives = 210/301 (69%), Gaps = 3/301 (0%) Query: 12 LAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMI 71 L+QEI YL LGK ++ F+D E++V++ E+VRG DVF+VQ T PAN+ LMELLIMI Sbjct: 3 LSQEIACYLGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMI 62 Query: 72 DAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQV 131 DA RR+SA+RIT VIPYFGY R DRK R I+AKLVANLIT+AGADRV+ DLH+GQ Sbjct: 63 DACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQS 122 Query: 132 QGFFDIPTDNLYALPILERDIKERNDISN-LMVVSPDVGGVVRARALAKRLGCL-LAIVD 189 G+FDIP D++Y P++ + + S L+VVSPDVGGV RARA AK+L LAIVD Sbjct: 123 MGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIVD 182 Query: 190 KRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVL 249 KRR+ EVMN+IG V+GK I++DD++DT GT+ A L+++GA V A TH V Sbjct: 183 KRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVF 242 Query: 250 SSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLF 309 S +IER+ +E+++T++I P ++ +L++A L+GE I R ++ S+SS+F Sbjct: 243 SPPAIERLSSGLFQEVIVTNTI-PVSEKNYFPQLTVLSVANLLGETIWRVHDDCSVSSIF 301 Query: 310 D 310 D Sbjct: 302 D 302 >gnl|CDD|179476 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase; Provisional. Length = 330 Score = 345 bits (887), Expect = 7e-96 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 3/310 (0%) Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60 +++F+G+SN LAQE+ YL LG F+D E++V+I E++RG DV+++Q T P Sbjct: 22 LRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPV 81 Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120 ND+LMELLIM+DA RR+SAR+IT VIPY+GY R DRK + R I+AKLVANLIT+AGADR Sbjct: 82 NDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADR 141 Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 V+ +DLH+ Q+QG+FDIP D++Y P+L + +N + +++VVSPDVGGV RARA AK+ Sbjct: 142 VLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKN-LEDIVVVSPDVGGVARARAFAKK 200 Query: 181 L-GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 L LAI+DKRR+ EV+N+IG V+GK IL+DD++DTGGT+C A L ++GA Sbjct: 201 LNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQ 260 Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 V A TH V S +IER+ +E+++T++I P + ++++L++A ++GEAI R Sbjct: 261 VYACATHAVFSPPAIERLSSGLFEEVIVTNTI-PVPEERRFPQLKVLSVANMLGEAIWRI 319 Query: 300 FEERSISSLF 309 EE S+SS+F Sbjct: 320 HEESSVSSMF 329 >gnl|CDD|167353 PRK02269, PRK02269, ribose-phosphate pyrophosphokinase; Provisional. Length = 320 Score = 342 bits (879), Expect = 6e-95 Identities = 160/314 (50%), Positives = 218/314 (69%), Gaps = 6/314 (1%) Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60 +K+FA +SN+ LA+++ + LGK+SV FSD E+ V I E++RG VFI+QSTS P Sbjct: 6 LKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPV 65 Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120 ND LME+LIM+DA++R+SA I V+PY+GY RQDRK R PI++KLVAN++ AG DR Sbjct: 66 NDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDR 125 Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERN-DISNLMVVSPDVGGVVRARALAK 179 ++ +DLHA Q+QGFFDIP D+L P++ R +++VVSPD GGV RAR LA+ Sbjct: 126 LLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQ 185 Query: 180 RLGCLLAIVDKRREHPGKI--EVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 L +AI+DKRR EVMNIIG V+GK CILIDD++DT GT+C AADAL E GA Sbjct: 186 FLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGA 245 Query: 238 LSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ-PTDLVKSSAKIRILTIAQLMGEAI 296 V A TH VLS +++ I+KS +++LV+ D+I P + + KI ++IA L+GEAI Sbjct: 246 TEVYASCTHPVLSGPALDNIQKSAIEKLVVLDTIYLPEE--RLIDKIEQISIADLLGEAI 303 Query: 297 NRTFEERSISSLFD 310 R E+R +S LF+ Sbjct: 304 IRIHEKRPLSPLFE 317 >gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase; Provisional. Length = 304 Score = 325 bits (835), Expect = 1e-89 Identities = 136/303 (44%), Positives = 200/303 (66%), Gaps = 6/303 (1%) Query: 12 LAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMI 71 LA+E+ L + + F++ E++V E+VRG D F++QS + P N +LME LIMI Sbjct: 1 LAEEVAKELGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMI 60 Query: 72 DAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQV 131 DA++R+SA+RIT V+P++ Y RQD+K R PISA+LVA+L AGADR++ +DLH Q+ Sbjct: 61 DALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQI 120 Query: 132 QGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG-CLLAIVDK 190 QGFFD P D+L+A+P+L ++++ D+ N+ VVSPD G V A A RLG LA + K Sbjct: 121 QGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHK 180 Query: 191 RR--EHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV 248 R P ++ ++G VEG+ C+L+DD++DTGGT+ GA AL E GA V THGV Sbjct: 181 TRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGV 240 Query: 249 LSSSSIERIEKSKMKELVITDSI-QPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISS 307 LS + ER++ +E+V+TD++ P + K K+ +L+IA L+ AI FE+ S++S Sbjct: 241 LSGPAAERLKNCGAREVVVTDTLPIPEE--KRFDKLTVLSIAPLLARAIREVFEDGSVTS 298 Query: 308 LFD 310 LFD Sbjct: 299 LFD 301 >gnl|CDD|185478 PTZ00145, PTZ00145, phosphoribosylpyrophosphate synthetase; Provisional. Length = 439 Score = 312 bits (802), Expect = 5e-86 Identities = 140/316 (44%), Positives = 209/316 (66%), Gaps = 9/316 (2%) Query: 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62 +F+G+SN L++ I D+L T LG+ + F+D EV ++ E++RG+DV+I+Q T P N+ Sbjct: 122 LFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNE 181 Query: 63 YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122 L+ELL+MI RR+SA++IT VIPY+GY RQDRK S R PISA VA +I G DRV+ Sbjct: 182 NLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVV 241 Query: 123 MLDLHAGQVQGFFD--IPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 +DLH+GQ+QGFF +P DNL A ++ D + D+ ++VSPD GGV RAR Sbjct: 242 AIDLHSGQIQGFFGPRVPVDNLEA-QLIGLDYFTKKDLYKPVIVSPDAGGVYRARKFQDG 300 Query: 181 LG------CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYE 234 L C +A++ K+R P +IE M+++G V D I++DD++DT GTLC AA L + Sbjct: 301 LNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKK 360 Query: 235 QGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGE 294 GA V A+ THG+ S +IERIE S ++E+V+TD+++ + S KI L+++ L+ + Sbjct: 361 HGARRVFAFATHGLFSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVAD 420 Query: 295 AINRTFEERSISSLFD 310 AI R ++ S++ LF+ Sbjct: 421 AIRRIHQKESLNDLFN 436 >gnl|CDD|179425 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional. Length = 323 Score = 312 bits (801), Expect = 7e-86 Identities = 138/310 (44%), Positives = 204/310 (65%), Gaps = 4/310 (1%) Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60 +K+F+ NSN +A++I LGK S FSD E+ + I E+VRG+D++I+QSTS P Sbjct: 10 IKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPV 69 Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120 ND+L ELLIMIDA +R+SA + V+PYFGY RQDR PR PI+AKLVAN++ +AG DR Sbjct: 70 NDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDR 129 Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDI-SNLMVVSPDVGGVVRARALAK 179 V+ LDLHA QVQGFFDIP DNL+ +P+ + ++ S+++VVSP G+ RAR+LA+ Sbjct: 130 VLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAE 189 Query: 180 RLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 L +AI+D ++ + E IIG V GK ILIDDI++TG T AA + +GA Sbjct: 190 YLDAPIAIIDYAQDDSEREEGY-IIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATE 248 Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 + A +HG+ + + E +E + +KE+++TDS+ + + + L+ ++L+ +AI R Sbjct: 249 IYAVASHGLFAGGAAEVLENAPIKEILVTDSVATKE--RVPKNVTYLSASELIADAIIRI 306 Query: 300 FEERSISSLF 309 E + +S LF Sbjct: 307 HERKPLSPLF 316 >gnl|CDD|179062 PRK00553, PRK00553, ribose-phosphate pyrophosphokinase; Provisional. Length = 332 Score = 268 bits (687), Expect = 1e-72 Identities = 126/311 (40%), Positives = 194/311 (62%), Gaps = 5/311 (1%) Query: 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62 IF+ + + L IC L G+ + F+D E ++ E+VR +DV I QST P ND Sbjct: 12 IFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVND 71 Query: 63 YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122 LMELLI IDA++R SA+ IT ++PY+GY RQDRK + R PI++KLVA+L+T+AG RV Sbjct: 72 SLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVT 131 Query: 123 MLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG 182 + D+H+ Q QGFFDIP D L + + E +L+VVSPD GGV RAR +A+ L Sbjct: 132 LTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLE 191 Query: 183 CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 LAI+DKRR E +N++G+V+ K+C+++DD++DTGGT+ AA L +Q A V Sbjct: 192 LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCV 251 Query: 243 YITHGVLSSSSIERIEKSKMKELV----ITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298 THG+ + ++I+ +++ K+L+ +++SI T + + +++ +A L E + Sbjct: 252 MATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQTKF-EKKPQFKVVDLAHLYEEVLLC 310 Query: 299 TFEERSISSLF 309 SIS+++ Sbjct: 311 YANGGSISAIY 321 >gnl|CDD|179172 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase; Provisional. Length = 285 Score = 205 bits (525), Expect = 8e-54 Identities = 101/299 (33%), Positives = 172/299 (57%), Gaps = 16/299 (5%) Query: 2 KIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAN 61 I G++++ LA E+ L+T L F D E++V I + GEDV I+ +T P + Sbjct: 1 MIIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTY-PQD 59 Query: 62 DYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRV 121 + L+ELL++IDA+R A+ IT VIPY GY RQD++ P PISA+ +A +I+ DR+ Sbjct: 60 ENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYY-DRI 118 Query: 122 IMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181 I +++H + FF IP NL A P++ I + + + +V++PD G + A+ A+ L Sbjct: 119 ITINIHEPSILEFFPIPFINLDAAPLIAEYIG--DKLDDPLVLAPDKGALELAKEAAEIL 176 Query: 182 GCLLAIVDKRREHPGKIE--VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 GC ++K R P ++E N+ V+GKD +++DDI+ TGGT+ A L EQGA Sbjct: 177 GCEYDYLEKTRISPTEVEIAPKNL--DVKGKDVLIVDDIISTGGTMATAIKILKEQGAKK 234 Query: 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298 V H VL +I ++ + + E+++TD++ +++ +++A L+ + + + Sbjct: 235 VYVACVHPVLVGDAILKLYNAGVDEIIVTDTL--------ESEVSKISVAPLIADLLKK 285 >gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase; Provisional. Length = 382 Score = 125 bits (317), Expect = 1e-29 Identities = 91/318 (28%), Positives = 153/318 (48%), Gaps = 38/318 (11%) Query: 26 KASVTYFSDREVFVEIGENVRGEDVFIVQST---SC-----------PANDYLMELLIMI 71 A FS+ E EI E+VRG+D++I+Q S +D+ +L I Sbjct: 56 PAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTI 115 Query: 72 DAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQV 131 DA+R ARRIT ++P+ RQ ++ R + L + + G D +I D H ++ Sbjct: 116 DAIR-GKARRITVIMPFLYESRQHKRKG-RESLDCALALQELEELGVDNIITFDAHDPRI 173 Query: 132 QGFFDIPT-DNLYA----LPILERDIKE-RNDISNLMVVSPDVGGVVRARALAKRLGCLL 185 + + +NLY + L ++ K+ D +LMV+SPD G + RA+ A LG L Sbjct: 174 ENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVDL 233 Query: 186 AIVDKRREHP----GK--IEVMNIIGK-VEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238 + KRR++ G+ I +G+ VEGKD +++DD++ +GG++ AA L +GA Sbjct: 234 GLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAK 293 Query: 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLV------KSSAKIRILTIAQLM 292 + T G ++ +E+ + K E D I T+LV S + +++L+ Sbjct: 294 KIIVAATFG-FFTNGLEKFD--KAYEEGYFDRIIGTNLVYHPEELLSKPWYIEVDMSKLI 350 Query: 293 GEAINRTFEERSISSLFD 310 I+ + S+S L D Sbjct: 351 ARIIDALNHDVSLSKLLD 368 >gnl|CDD|180877 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase; Provisional. Length = 301 Score = 116 bits (294), Expect = 6e-27 Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 10/274 (3%) Query: 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAND 62 + A N A + L +G+ + F D E +V + V G V +V S P ++ Sbjct: 5 LLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DE 63 Query: 63 YLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122 L+ LL +A R ARR+ V PY Y RQD P IS + A L++ DR++ Sbjct: 64 KLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLS-GSFDRLV 122 Query: 123 MLDLHAGQV---QGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAK 179 +D H + + IP L A P + I R + +++ PD A+A+ Sbjct: 123 TVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWI--RAHVPRPLLIGPDEESEQWVAAVAE 180 Query: 180 RLGCLLAIVDKRR--EHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 R G A++ K R + +I + + G+ +L+DDIV TG TL AA L GA Sbjct: 181 RAGAPHAVLRKTRHGDRDVEISLPDAA-PWAGRTPVLVDDIVSTGRTLIEAARQLRAAGA 239 Query: 238 LSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 S + H + + + + + + +V TD++ Sbjct: 240 ASPDCVVVHALFAGDAYSALAAAGIARVVSTDTV 273 >gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase. Length = 326 Score = 84.4 bits (209), Expect = 3e-17 Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 35/283 (12%) Query: 37 VFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYF---GYCR 93 +F+ +RG+ V + S S P + E L +I A+ + T V+P+F R Sbjct: 56 LFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSER 113 Query: 94 QDRKPSPRTPIS-AKLVANL-ITQAGADRVIMLDLHAGQVQGFFDIPTDNLYAL-----P 146 +R+ T + A++++N+ I++ G +++ D+HA Q + +F DN+ P Sbjct: 114 VEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFG---DNVLPCFESGIP 170 Query: 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLA-----IVDKRREHPGKIEVM 201 +L++ +++ D N+++ PD G KR + K RE +I + Sbjct: 171 LLKKRLQQLPDSDNIVIAFPDDGA-------WKRFHKQFEHFPMVVCTKVREGDKRIVRI 223 Query: 202 NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSK 261 G G+ +++DD+V +GGTL L GA V+AY+THGV + S ER Sbjct: 224 KE-GNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDN 282 Query: 262 MKE------LVITDSI-QPTDLVKSSAKIRILTIAQLMGEAIN 297 ITDS Q V+ A +L++A + +A+ Sbjct: 283 GGPEAGFAYFWITDSCPQTVKAVRGKAPFEVLSLAGSIADALQ 325 >gnl|CDD|177882 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase. Length = 189 Score = 42.7 bits (101), Expect = 1e-04 Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241 V+GK +L++DIVDTG TL L +GA SV+ Sbjct: 94 DVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129 >gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein; Provisional. Length = 200 Score = 42.2 bits (100), Expect = 2e-04 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 21/97 (21%) Query: 157 DISNLMVVSPDV------GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNI------- 203 D+ DV GV A +A LG LAI HP K + Sbjct: 77 DMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIY-----HPKKWDHGEGEKKTGSF 131 Query: 204 ---IGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 VEGK C+++DD++ +G T+ + L E G Sbjct: 132 SRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGG 168 >gnl|CDD|161762 TIGR00201, comF, comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis. Length = 190 Score = 39.8 bits (93), Expect = 9e-04 Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 +G++ +L+DD+V TG TL A L E GA SV Sbjct: 150 FQGRNIVLVDDVVTTGATLHEIARLLLELGAASV 183 >gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional. Length = 178 Score = 39.6 bits (93), Expect = 0.001 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%) Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRR----EHPGKIEVMNI-------------- 203 ++V+P+ G+ A AL++RLG + K R + P EV++I Sbjct: 55 VLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGAD 114 Query: 204 IGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 K++GK ++DD+V TGGTL + G V A Sbjct: 115 AEKLKGKRVAIVDDVVSTGGTLTALERLVERAGG-QVVAKA 154 >gnl|CDD|179036 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated. Length = 202 Score = 39.0 bits (92), Expect = 0.002 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIG-KVEGKDCILIDDIVD 220 +V P GG+ A A+A+ L V R+E E I G ++ GK ++++D++ Sbjct: 67 VVAGPATGGIPLAAAVARALDLPAIFV--RKEAKDHGEGGQIEGRRLFGKRVLVVEDVIT 124 Query: 221 TGGTLCGAADALYEQGA 237 TGG++ A +A+ GA Sbjct: 125 TGGSVLEAVEAIRAAGA 141 >gnl|CDD|179963 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional. Length = 176 Score = 37.0 bits (87), Expect = 0.005 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 17/103 (16%) Query: 150 RDIKERN-DISNLMVVSPDVGGVVRARALAKRLGCL------LAIVD---------KRRE 193 +I ERN + NL++V GV A LA+RL L + +D K+ Sbjct: 21 HEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGL 80 Query: 194 HPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQG 236 HP +++ +I +EGK IL+DD++ TG T+ A DAL++ G Sbjct: 81 HP-QVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYG 122 >gnl|CDD|179411 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional. Length = 175 Score = 36.2 bits (85), Expect = 0.011 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 13/89 (14%) Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGK-IEV------------MNIIGKVE 208 +V + G + ALA +LG V K + P + I ++ Sbjct: 54 KIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKP 113 Query: 209 GKDCILIDDIVDTGGTLCGAADALYEQGA 237 G +++DD++ TGGTL A L GA Sbjct: 114 GDRVLIVDDLLATGGTLEAAIKLLERLGA 142 >gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional. Length = 170 Score = 36.0 bits (83), Expect = 0.014 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT 221 +V VGGV A A++ G AI+ K + GK + IIG V+GK +L++D+ + Sbjct: 59 VVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGL--IIGDVKGKRVLLVEDVTTS 116 Query: 222 GGTLCGAADALYEQGALSVTAYIT 245 GG+ + L GA+ V +T Sbjct: 117 GGSALYGIEQLRAAGAV-VDDVVT 139 >gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional. Length = 181 Score = 35.2 bits (82), Expect = 0.019 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 ++G+ +++DDI+D G TL D E GA V Sbjct: 95 LKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEV 128 >gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase. Length = 187 Score = 34.6 bits (80), Expect = 0.029 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Query: 204 IGKVE-GKDCILIDDIVDTGGTLCGAADALYEQGA 237 +G VE G+ ++IDD++ TGGTLC A + L GA Sbjct: 119 VGAVEPGERALVIDDLIATGGTLCAAINLLERAGA 153 >gnl|CDD|181678 PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated. Length = 156 Score = 34.5 bits (80), Expect = 0.036 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%) Query: 169 GGVVRARALAKRLGCLL----AIV----DKRREHPGKIEVMNIIGKVE--GKDCILIDDI 218 GG+V A LA+ LG L I D + E + ++ + E G+ +++DD+ Sbjct: 41 GGLVPAAILARELGIRLVDTVCISSYDHDNQGE-------LKVLKRAEGDGEGFLVVDDL 93 Query: 219 VDTGGTL 225 VDTGGT Sbjct: 94 VDTGGTA 100 >gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme. Length = 173 Score = 32.8 bits (75), Expect = 0.13 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 162 MVVSPDVGGVVRARALAKRL-----GCLLAIVDKRREHPGKIEVMNIIGKV-EGKDCILI 215 ++ P +GG+ A A++ +L L R+E E NI G++ EG +++ Sbjct: 57 VIAGPALGGIPIATAVSVKLAKPGGDIPLCFN--RKEAKDHGEGGNIEGELLEGDKVVVV 114 Query: 216 DDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKS 260 +D++ TG ++ A + + G I S+ + EK Sbjct: 115 EDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKE 159 >gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional. Length = 227 Score = 32.3 bits (74), Expect = 0.15 Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 V+G+ ++DD+V TG T+ A L GA SV + Sbjct: 183 LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 >gnl|CDD|130270 TIGR01203, HGPRTase, hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine. Length = 166 Score = 32.2 bits (74), Expect = 0.17 Identities = 11/19 (57%), Positives = 17/19 (89%) Query: 207 VEGKDCILIDDIVDTGGTL 225 ++GKD ++++DIVDTG TL Sbjct: 82 IKGKDVLIVEDIVDTGLTL 100 >gnl|CDD|178885 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed. Length = 209 Score = 31.6 bits (73), Expect = 0.24 Identities = 10/36 (27%), Positives = 22/36 (61%) Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 ++ + I++D ++ TGG+ A D L ++GA ++ Sbjct: 122 IDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKV 157 >gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional. Length = 475 Score = 30.9 bits (70), Expect = 0.38 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 192 REHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS 251 RE K+++ + G VEGK +++DD + G T L E GA V I+ ++ Sbjct: 331 REQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPITH 390 Query: 252 SSIERIEKSKMKELVITD-SIQPTDLVKSSAKIRILTIAQLMGEAINRTFEE 302 I+ S +EL+ ++ S++ + + + L+ L+ E I R +E Sbjct: 391 PCFYGIDTSTKEELIASNHSVEEIRQLIGADSLAFLSQEGLL-EGIGRPYES 441 >gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional. Length = 471 Score = 31.1 bits (70), Expect = 0.38 Identities = 24/78 (30%), Positives = 34/78 (43%) Query: 192 REHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS 251 RE K+++ + G VEGK ++IDD + G T L E GA V I L Sbjct: 331 REQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKY 390 Query: 252 SSIERIEKSKMKELVITD 269 I+ KEL+ + Sbjct: 391 PCFYGIDIQTRKELIAAN 408 >gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins. Length = 207 Score = 31.1 bits (71), Expect = 0.42 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK 259 ++ + I++D ++ TGGT+ A D L ++GA + + V + IE +EK Sbjct: 120 IDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIK--VLSIVAAPEGIEAVEK 170 >gnl|CDD|162319 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. Length = 187 Score = 30.9 bits (70), Expect = 0.43 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%) Query: 163 VVSPDVGGV----VRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDI 218 +V P +GGV AR L+ R +I +R G +++ G+ + ++D+ Sbjct: 62 IVGPAMGGVILGYEVARQLSVR-----SIFAEREG--GGMKLRRGFAVKPGEKFVAVEDV 114 Query: 219 VDTGGTLCGAADALYEQGALSVTA 242 V TGG+L A A+ QG V Sbjct: 115 VTTGGSLLEAIRAIEGQGGQVVGL 138 >gnl|CDD|184342 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional. Length = 176 Score = 30.1 bits (68), Expect = 0.76 Identities = 12/30 (40%), Positives = 20/30 (66%) Query: 208 EGKDCILIDDIVDTGGTLCGAADALYEQGA 237 EG++ ++++DI TG + A +AL E GA Sbjct: 106 EGEEVVVLEDIATTGQSAVDAVEALREAGA 135 >gnl|CDD|185481 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase; Provisional. Length = 241 Score = 29.7 bits (67), Expect = 0.85 Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 1/31 (3%) Query: 196 GKIEVM-NIIGKVEGKDCILIDDIVDTGGTL 225 GK+E++ + + ++ K ++++DI+DTG TL Sbjct: 136 GKLEIVSDDLSCLKDKHVLIVEDIIDTGNTL 166 >gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus. Length = 477 Score = 29.8 bits (67), Expect = 1.0 Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 97 KPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQ 132 KPS + P +A +A L ++AGA ++ +H + Sbjct: 170 KPSEKVPSAAVKLAELFSEAGAPDGVLNVVHGDKEA 205 >gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate. Length = 268 Score = 29.4 bits (66), Expect = 1.3 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 24/109 (22%) Query: 142 LYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRRE-------- 193 + A ER+I V++ G+ A A+A L L IV K + Sbjct: 119 ILASVFAEREID--------AVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVS 170 Query: 194 ------HPGKIEVMNIIGKV--EGKDCILIDDIVDTGGTLCGAADALYE 234 +I+ M++ + G ++IDD + GGT+ G + L E Sbjct: 171 INYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDE 219 >gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. Length = 754 Score = 29.2 bits (65), Expect = 1.5 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%) Query: 96 RKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPT-------DNLYALPIL 148 RK + + A+ V+ L+ R ++LDL A + + L A P + Sbjct: 586 RKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITELLASPAM 645 Query: 149 ERDIKERNDISNLMVV-SPDVGGVVRARALAKRLGCLLAIV 188 + S+ +VV V RA A+ +L + Sbjct: 646 FSLVIHARLYSDCVVVDVGTADPVRDMRAAARLAIIMLLVT 686 >gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional. Length = 249 Score = 28.0 bits (63), Expect = 3.1 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 15/66 (22%) Query: 105 SAKLV----ANLITQAGADRVIMLD--LH--------AGQVQGFFDIPTDNLYALPILER 150 S+KLV A + QAG RVIM D +H A ++ F+ I N+ P L Sbjct: 38 SSKLVYSYFAVALAQAGF-RVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRA 96 Query: 151 DIKERN 156 I+E Sbjct: 97 AIREEG 102 >gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase; Provisional. Length = 260 Score = 27.8 bits (62), Expect = 3.3 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 4 FAGNSNRNLAQEICDYLHTSLGKASVTYFSD-------REVFVEIGENVRGEDVFI 52 F NSN A +I + L G + Y + +E+F +I E+ D FI Sbjct: 37 FTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFDRVDFFI 92 >gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage. Length = 169 Score = 28.0 bits (63), Expect = 3.5 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 25/110 (22%) Query: 143 YALPILERDIKERN-DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGK---- 197 + + +L K+ N D +V P+ G + ALA +LG V K + PG+ Sbjct: 33 FLIDLLVERYKDANIDY----IVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISA 88 Query: 198 ------------IEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQ 235 I I G+ +++DD++ TGGT A D L + Sbjct: 89 SYDLEYGKDQLEIHKDAIK---PGQRVLIVDDLLATGGTA-EATDELIRK 134 >gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional. Length = 254 Score = 27.7 bits (61), Expect = 3.7 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%) Query: 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMN 202 +PIL D+ ++ L+ V+P G +R+ L +R+ LL ++ +RE GKI V++ Sbjct: 149 IPILS-DV----EVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE--GKIIVID 199 >gnl|CDD|177917 PLN02278, PLN02278, succinic semialdehyde dehydrogenase. Length = 498 Score = 27.7 bits (62), Expect = 3.8 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 97 KPSPRTPISAKLVANLITQAG 117 KPS TP++A A L QAG Sbjct: 194 KPSELTPLTALAAAELALQAG 214 >gnl|CDD|185321 PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional. Length = 178 Score = 27.3 bits (60), Expect = 5.5 Identities = 9/19 (47%), Positives = 16/19 (84%) Query: 207 VEGKDCILIDDIVDTGGTL 225 + GKD ++++DI+D+G TL Sbjct: 90 IRGKDVLIVEDIIDSGNTL 108 >gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme. Length = 472 Score = 27.1 bits (60), Expect = 6.7 Identities = 10/21 (47%), Positives = 17/21 (80%) Query: 97 KPSPRTPISAKLVANLITQAG 117 KPS +TP+SA +A+++ +AG Sbjct: 173 KPSEKTPLSALYLADILYEAG 193 >gnl|CDD|162532 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070). Length = 448 Score = 27.0 bits (60), Expect = 6.9 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 97 KPSPRTPISAKLVANLITQAG 117 KP+ +TP+SA +A L QAG Sbjct: 151 KPAEQTPLSALALARLAEQAG 171 >gnl|CDD|184614 PRK14314, glmM, phosphoglucosamine mutase; Provisional. Length = 450 Score = 26.8 bits (60), Expect = 7.7 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 8/48 (16%) Query: 118 ADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVS 165 ADR+I++D V G D + A I D+K+R + +V+ Sbjct: 247 ADRLIVVDEKGHIVDG------DQIMA--ICATDLKKRGALPKNTLVA 286 >gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase. Length = 398 Score = 26.7 bits (59), Expect = 8.9 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 230 DALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS---IQPTDLVKSSAKIRIL 286 + Y+ + V + E I K + D IQ T K+S K+ +L Sbjct: 306 EECYKNLKKLLGLDGLAAVNGVEAPEGINLPKEHSVSKMDDKIIIQET-GEKTSNKLIVL 364 Query: 287 TIAQLMGEAINRTF 300 ++ L G A RT Sbjct: 365 DLSSLNGGAPGRTR 378 >gnl|CDD|180357 PRK06031, PRK06031, phosphoribosyltransferase; Provisional. Length = 233 Score = 26.6 bits (59), Expect = 9.3 Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 202 NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 ++ +EG+ LIDD++ +G ++ L G Sbjct: 147 RMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGI 182 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0631 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,007,995 Number of extensions: 328314 Number of successful extensions: 798 Number of sequences better than 10.0: 1 Number of HSP's gapped: 754 Number of HSP's successfully gapped: 60 Length of query: 310 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 217 Effective length of database: 3,984,929 Effective search space: 864729593 Effective search space used: 864729593 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.9 bits)