BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780409|ref|YP_003064822.1| ribose-phosphate
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
(310 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 310
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA
Sbjct: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60
Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR
Sbjct: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120
Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180
VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR
Sbjct: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180
Query: 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV
Sbjct: 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240
Query: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300
TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF
Sbjct: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300
Query: 301 EERSISSLFD 310
EERSISSLFD
Sbjct: 301 EERSISSLFD 310
>gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 59
Score = 29.6 bits (65), Expect = 0.069, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241
V G +LIDD+ TG T AA AL + GA++V+
Sbjct: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVS 49
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTD 140
+ IP++ R PI++ + N T A D +I+LD+ + ++ FFD
Sbjct: 140 KFCTFIPWYTNSRH-----IVMPITSSVKVNSQTDARLDMMIVLDV-SRSMESFFD---- 189
Query: 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRA 174
++ ++ IK N + + + PDV VV++
Sbjct: 190 --SSITKIDMAIKSINAMLEEVKLIPDVNNVVQS 221
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 152 IKERNDISNLMVVSPDVGGVVRARA 176
IKERN ++ + V+P VG ++R A
Sbjct: 563 IKERNQLTAGINVAPMVGNIIRRSA 587
>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 412
Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 7 NSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLME 66
++NRNLAQEI D ++ D + + EN+ D I S + P + ++
Sbjct: 330 HNNRNLAQEINDKFSNTM--------KDFHILKDRAENIESFDQMI--SENNPEGNKIVR 379
Query: 67 LLIMIDAVRRSSARRI 82
LI + S R+I
Sbjct: 380 NLINDLITQTESLRKI 395
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 23.1 bits (48), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 235 QGALSVTAYITHGVLSSSSIERIEKSK----MKELVITDS 270
+G+ T+ ITHG + E++ KSK E +I++S
Sbjct: 612 RGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651
>gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 426
Score = 22.7 bits (47), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 140 DNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRR 192
+++ LP+L IKE+ DI+N++ V R L +++ + ++ +RR
Sbjct: 360 EDVKRLPVLVPPIKEQFDITNVINVE-----TARIDVLVEKIEQSIVLLKERR 407
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.137 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,634
Number of Sequences: 1233
Number of extensions: 7251
Number of successful extensions: 27
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 11
length of query: 310
length of database: 328,796
effective HSP length: 74
effective length of query: 236
effective length of database: 237,554
effective search space: 56062744
effective search space used: 56062744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)