BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] (310 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/310 (100%), Positives = 310/310 (100%) Query: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA Sbjct: 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPA 60 Query: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR Sbjct: 61 NDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADR 120 Query: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR Sbjct: 121 VIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 Query: 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV Sbjct: 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 Query: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF Sbjct: 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 Query: 301 EERSISSLFD 310 EERSISSLFD Sbjct: 301 EERSISSLFD 310 >gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 59 Score = 29.6 bits (65), Expect = 0.069, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241 V G +LIDD+ TG T AA AL + GA++V+ Sbjct: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVS 49 >gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] Length = 374 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%) Query: 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTD 140 + IP++ R PI++ + N T A D +I+LD+ + ++ FFD Sbjct: 140 KFCTFIPWYTNSRH-----IVMPITSSVKVNSQTDARLDMMIVLDV-SRSMESFFD---- 189 Query: 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRA 174 ++ ++ IK N + + + PDV VV++ Sbjct: 190 --SSITKIDMAIKSINAMLEEVKLIPDVNNVVQS 221 >gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 598 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 152 IKERNDISNLMVVSPDVGGVVRARA 176 IKERN ++ + V+P VG ++R A Sbjct: 563 IKERNQLTAGINVAPMVGNIIRRSA 587 >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%) Query: 7 NSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLME 66 ++NRNLAQEI D ++ D + + EN+ D I S + P + ++ Sbjct: 330 HNNRNLAQEINDKFSNTM--------KDFHILKDRAENIESFDQMI--SENNPEGNKIVR 379 Query: 67 LLIMIDAVRRSSARRI 82 LI + S R+I Sbjct: 380 NLINDLITQTESLRKI 395 >gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 23.1 bits (48), Expect = 7.1, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Query: 235 QGALSVTAYITHGVLSSSSIERIEKSK----MKELVITDS 270 +G+ T+ ITHG + E++ KSK E +I++S Sbjct: 612 RGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651 >gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 22.7 bits (47), Expect = 8.8, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 140 DNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRR 192 +++ LP+L IKE+ DI+N++ V R L +++ + ++ +RR Sbjct: 360 EDVKRLPVLVPPIKEQFDITNVINVE-----TARIDVLVEKIEQSIVLLKERR 407 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.385 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,634 Number of Sequences: 1233 Number of extensions: 7251 Number of successful extensions: 27 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 11 length of query: 310 length of database: 328,796 effective HSP length: 74 effective length of query: 236 effective length of database: 237,554 effective search space: 56062744 effective search space used: 56062744 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)