HHsearch alignment for GI: 254780410 and conserved domain: COG2518

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].
Probab=93.97  E-value=0.41  Score=27.67  Aligned_cols=106  Identities=22%  Similarity=0.361  Sum_probs=62.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCCC---------CCCC-CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999818980499999987108987---------8646-89888888886457671179999999999999998388
Q gi|254780410|r    7 RKIVNLIKKNGQMTVDQYFALCVADPEF---------GYYS-TCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGF   76 (362)
Q Consensus         7 ~~i~~~I~~~G~i~f~~fM~~aLy~p~~---------GYY~-~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~   76 (362)
T Consensus         4 ~~l~~~lr~~~i~~-~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~-~gqtis~P~~v-------A~----m~~~L~~   70 (209)
T COG2518           4 RMLVERLRTEGITD-ERVLKAFLAVPRELFVPAAYKHLAYEDRALPIG-CGQTISAPHMV-------AR----MLQLLEL   70 (209)
T ss_pred             HHHHHHHHHCCCCC-HHHHHHHHHCCHHHCCCCHHHCCCCCCCCCCCC-CCCEECCCHHH-------HH----HHHHHCC
T ss_conf             78999998718775-999999985898750690454256468764478-99350574799-------99----9997489


Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf             87621410078646898887999974185643012102363697899999864111023
Q gi|254780410|r   77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD  135 (362)
Q Consensus        77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~  135 (362)
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~----------~~V~siEr~~~L~~~A~~~L~~lg~  119 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLV----------GRVVSIERIEELAEQARRNLETLGY  119 (209)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH----------CEEEEEEECHHHHHHHHHHHHHCCC
T ss_conf             999868887778309999999974----------8499999719999999999997698