Query gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 362
No_of_seqs 135 out of 1570
Neff 7.1
Searched_HMMs 39220
Date Sun May 29 17:59:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780410.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1565 Uncharacterized conser 100.0 0 0 678.1 29.3 353 3-361 2-367 (370)
2 KOG2901 consensus 100.0 0 0 478.4 16.0 340 4-352 34-391 (415)
3 pfam02636 DUF185 Uncharacteriz 100.0 0 0 426.8 19.1 232 62-296 1-240 (240)
4 pfam00398 RrnaAD Ribosomal RNA 97.2 0.0019 4.8E-08 43.6 7.8 77 40-140 5-81 (258)
5 PRK00274 ksgA dimethyladenosin 97.1 0.0035 9E-08 41.8 8.1 70 35-128 10-79 (267)
6 pfam05185 PRMT5 PRMT5 arginine 97.0 0.0083 2.1E-07 39.2 8.9 100 58-162 165-270 (447)
7 PTZ00338 dimethyladenosine tra 96.9 0.0062 1.6E-07 40.1 8.0 69 42-133 15-83 (296)
8 PRK06202 hypothetical protein; 96.9 0.0076 1.9E-07 39.5 7.8 85 78-166 61-147 (233)
9 smart00650 rADc Ribosomal RNA 96.7 0.0083 2.1E-07 39.3 7.1 51 72-132 7-57 (169)
10 PRK01683 trans-aconitate 2-met 96.7 0.011 2.8E-07 38.4 7.5 100 53-164 6-108 (252)
11 COG3963 Phospholipid N-methylt 96.5 0.011 2.9E-07 38.3 6.6 72 39-130 22-93 (194)
12 PRK09328 N5-glutamine S-adenos 96.4 0.017 4.4E-07 37.1 7.1 75 48-134 81-157 (277)
13 PRK08317 hypothetical protein; 96.4 0.022 5.5E-07 36.4 7.4 68 64-138 5-72 (241)
14 TIGR03534 RF_mod_HemK protein- 96.4 0.024 6E-07 36.2 7.6 62 61-134 74-135 (251)
15 TIGR03533 L3_gln_methyl protei 96.3 0.074 1.9E-06 32.8 10.0 48 78-133 121-168 (284)
16 PRK09329 N5-glutamine S-adenos 96.3 0.019 4.7E-07 36.9 6.8 82 47-138 78-161 (285)
17 COG0030 KsgA Dimethyladenosine 96.2 0.026 6.7E-07 35.8 7.1 68 41-131 6-73 (259)
18 PRK11805 N5-glutamine S-adenos 96.1 0.035 8.8E-07 35.0 7.4 64 60-134 118-181 (307)
19 PRK01544 bifunctional N5-gluta 96.0 0.063 1.6E-06 33.2 8.5 78 48-133 85-182 (503)
20 COG2890 HemK Methylase of poly 95.8 0.062 1.6E-06 33.3 7.4 70 81-171 113-184 (280)
21 PRK13943 protein-L-isoaspartat 95.7 0.074 1.9E-06 32.7 7.7 81 36-134 40-124 (317)
22 TIGR02072 BioC biotin biosynth 95.7 0.023 5.8E-07 36.3 5.0 66 58-131 14-81 (272)
23 PRK11036 putative metallothion 95.7 0.078 2E-06 32.6 7.7 89 63-162 30-125 (256)
24 PRK13942 protein-L-isoaspartat 95.6 0.17 4.3E-06 30.3 9.2 109 3-133 4-124 (214)
25 pfam01135 PCMT Protein-L-isoas 95.6 0.22 5.7E-06 29.5 9.7 75 41-134 48-122 (205)
26 pfam05175 MTS Methyltransferas 95.6 0.051 1.3E-06 33.9 6.4 74 75-156 28-105 (170)
27 TIGR00755 ksgA dimethyladenosi 95.6 0.047 1.2E-06 34.1 6.2 54 68-131 19-73 (277)
28 COG2263 Predicted RNA methylas 95.4 0.14 3.6E-06 30.9 8.2 84 64-156 31-115 (198)
29 PHA02056 putative methyltransf 95.4 0.041 1E-06 34.5 5.4 102 40-166 39-143 (279)
30 PRK00216 ubiE ubiquinone/menaq 95.4 0.082 2.1E-06 32.4 6.9 65 69-140 42-108 (239)
31 PRK09489 rsmC 16S ribosomal RN 95.2 0.098 2.5E-06 31.9 6.9 13 342-354 326-338 (342)
32 KOG0822 consensus 95.2 0.058 1.5E-06 33.5 5.6 101 58-163 347-452 (649)
33 PRK07580 Mg-protoporphyrin IX 95.1 0.08 2E-06 32.5 6.2 83 67-159 52-137 (230)
34 pfam01209 Ubie_methyltran ubiE 94.9 0.14 3.5E-06 30.9 7.1 164 72-297 41-220 (233)
35 pfam08242 Methyltransf_12 Meth 94.9 0.067 1.7E-06 33.1 5.2 43 83-133 1-43 (98)
36 KOG0820 consensus 94.8 0.13 3.4E-06 31.0 6.7 56 69-134 49-104 (315)
37 PRK00312 pcm protein-L-isoaspa 94.8 0.18 4.7E-06 30.1 7.3 75 37-133 48-123 (213)
38 PRK13944 protein-L-isoaspartat 94.6 0.15 3.9E-06 30.6 6.7 93 19-133 27-120 (205)
39 COG4123 Predicted O-methyltran 94.6 0.23 5.9E-06 29.4 7.4 134 60-239 33-169 (248)
40 PRK07402 precorrin-6B methylas 94.2 0.33 8.5E-06 28.3 7.5 56 71-134 33-88 (196)
41 TIGR03439 methyl_EasF probable 94.0 0.37 9.5E-06 28.0 7.4 62 63-130 63-124 (319)
42 COG2518 Pcm Protein-L-isoaspar 94.0 0.41 1E-05 27.7 7.6 106 7-135 4-119 (209)
43 PRK10258 biotin biosynthesis p 94.0 0.24 6E-06 29.3 6.4 56 61-129 28-83 (251)
44 pfam02384 N6_Mtase N-6 DNA Met 94.0 0.31 7.9E-06 28.5 7.0 102 44-157 23-133 (312)
45 cd02440 AdoMet_MTases S-adenos 93.9 0.18 4.7E-06 30.1 5.8 42 81-131 1-42 (107)
46 COG2813 RsmC 16S RNA G1207 met 93.8 0.21 5.4E-06 29.6 5.9 100 44-157 126-232 (300)
47 KOG2904 consensus 93.7 0.37 9.5E-06 28.0 7.0 73 46-131 121-193 (328)
48 TIGR03438 probable methyltrans 93.6 0.46 1.2E-05 27.4 7.4 48 77-131 62-109 (301)
49 PRK00377 cbiT cobalt-precorrin 93.6 0.37 9.3E-06 28.0 6.9 77 45-134 11-89 (198)
50 pfam08123 DOT1 Histone methyla 93.5 0.25 6.4E-06 29.1 5.9 67 56-131 20-90 (205)
51 pfam05206 TRM13 Methyltransfer 93.3 0.24 6.2E-06 29.2 5.5 50 68-120 7-57 (256)
52 KOG2361 consensus 93.2 0.75 1.9E-05 25.9 8.5 217 5-293 7-233 (264)
53 COG2519 GCD14 tRNA(1-methylade 93.2 0.4 1E-05 27.8 6.5 57 70-133 86-142 (256)
54 COG0421 SpeE Spermidine syntha 92.9 0.61 1.6E-05 26.5 7.2 51 76-134 74-124 (282)
55 pfam08704 GCD14 tRNA methyltra 92.5 0.63 1.6E-05 26.4 6.7 57 70-133 94-150 (309)
56 PRK08287 cobalt-precorrin-6Y C 92.3 0.65 1.7E-05 26.3 6.6 57 71-135 23-79 (186)
57 TIGR02469 CbiT precorrin-6Y C5 92.2 0.51 1.3E-05 27.0 5.9 56 71-133 12-68 (135)
58 pfam05219 DREV DREV methyltran 91.9 0.58 1.5E-05 26.6 6.0 194 21-297 44-240 (265)
59 pfam08241 Methyltransf_11 Meth 91.9 0.3 7.5E-06 28.6 4.4 40 83-131 1-40 (95)
60 TIGR03587 Pse_Me-ase pseudamin 91.6 0.65 1.7E-05 26.3 6.0 76 47-132 14-89 (204)
61 TIGR02987 met_A_Alw26 type II 90.9 0.63 1.6E-05 26.4 5.3 86 45-134 2-93 (603)
62 COG2226 UbiE Methylase involve 90.9 1.2 3E-05 24.5 6.7 61 72-140 45-106 (238)
63 smart00828 PKS_MT Methyltransf 90.0 0.76 1.9E-05 25.8 5.1 75 81-163 2-81 (224)
64 TIGR00080 pimt protein-L-isoas 88.9 2 5E-05 23.0 8.0 97 18-133 34-130 (228)
65 COG2242 CobL Precorrin-6B meth 88.0 1.9 4.8E-05 23.2 5.9 48 79-134 35-82 (187)
66 pfam09243 Rsm22 Mitochondrial 87.6 2.4 6E-05 22.5 8.3 69 55-131 12-80 (275)
67 COG0220 Predicted S-adenosylme 87.3 2 5.1E-05 23.0 5.7 83 74-181 44-127 (227)
68 KOG3924 consensus 86.9 2.4 6.2E-05 22.4 6.0 75 52-131 166-240 (419)
69 pfam07757 AdoMet_MTase Predict 86.6 1.3 3.4E-05 24.2 4.5 44 50-94 29-74 (112)
70 TIGR01747 diampropi_NH3ly diam 86.6 1.8 4.6E-05 23.3 5.2 63 62-127 191-253 (378)
71 pfam02353 CMAS Cyclopropane-fa 86.5 2.7 6.9E-05 22.1 8.2 163 65-297 49-217 (273)
72 KOG2811 consensus 86.3 2.7 7E-05 22.0 6.5 45 75-125 180-224 (420)
73 COG1331 Highly conserved prote 85.1 0.83 2.1E-05 25.6 2.8 51 21-72 301-355 (667)
74 PRK05134 3-demethylubiquinone- 84.8 3 7.8E-05 21.7 5.6 45 78-132 48-92 (233)
75 PRK01747 mnmC 5-methylaminomet 83.9 2.4 6.1E-05 22.4 4.8 47 77-124 56-102 (660)
76 pfam02390 Methyltransf_4 Putat 83.7 3.3 8.5E-05 21.4 5.5 138 71-240 13-161 (199)
77 PRK00811 spermidine synthase; 82.4 2.9 7.4E-05 21.9 4.7 79 42-133 43-125 (283)
78 pfam01596 Methyltransf_3 O-met 80.6 4.6 0.00012 20.5 6.9 66 55-134 28-93 (204)
79 pfam01170 UPF0020 Putative RNA 80.3 4.7 0.00012 20.4 7.9 66 53-133 10-75 (171)
80 pfam01564 Spermine_synth Sperm 80.1 4.8 0.00012 20.4 6.8 80 41-133 39-122 (240)
81 PRK00536 speE spermidine synth 79.6 4 0.0001 20.9 4.6 76 42-133 38-117 (262)
82 KOG2901 consensus 79.3 0.025 6.4E-07 36.0 -6.7 166 6-193 52-244 (415)
83 COG0286 HsdM Type I restrictio 79.1 4.1 0.0001 20.9 4.5 75 44-133 162-237 (489)
84 PRK04457 spermidine synthase; 79.0 5.2 0.00013 20.1 5.1 47 75-129 63-109 (262)
85 COG2227 UbiG 2-polyprenyl-3-me 78.8 5.2 0.00013 20.1 5.1 78 78-165 59-140 (243)
86 KOG2244 consensus 78.5 1.1 2.8E-05 24.8 1.5 42 21-62 364-416 (786)
87 PRK11873 arsM arsenite S-adeno 78.2 5.5 0.00014 20.0 6.0 46 81-133 76-121 (258)
88 KOG3987 consensus 78.0 0.89 2.3E-05 25.4 0.9 66 43-126 85-150 (288)
89 TIGR02021 BchM-ChlM magnesium 77.7 5.6 0.00014 19.9 6.2 112 67-196 43-162 (224)
90 COG4106 Tam Trans-aconitate me 77.7 3.6 9.1E-05 21.2 3.9 88 67-166 19-109 (257)
91 pfam07021 MetW Methionine bios 77.1 4 0.0001 20.9 4.0 71 81-164 16-90 (193)
92 pfam10294 Methyltransf_16 Puta 77.0 5.9 0.00015 19.7 6.7 34 60-93 25-59 (171)
93 PRK05785 hypothetical protein; 75.3 6.5 0.00017 19.5 6.2 41 77-128 50-90 (225)
94 TIGR00537 hemK_rel_arch methyl 73.7 7.1 0.00018 19.2 6.5 39 82-129 25-63 (183)
95 TIGR01394 TypA_BipA GTP-bindin 73.4 2.4 6.1E-05 22.4 2.1 46 41-98 324-379 (609)
96 COG4121 Uncharacterized conser 72.5 2.4 6E-05 22.5 1.9 83 40-123 17-107 (252)
97 TIGR00417 speE spermidine synt 72.4 2.2 5.5E-05 22.7 1.7 95 27-134 21-123 (284)
98 PRK11705 cyclopropane fatty ac 71.3 8.1 0.00021 18.8 8.3 55 65-128 154-208 (383)
99 KOG1540 consensus 71.0 8.2 0.00021 18.8 6.2 62 66-129 83-149 (296)
100 pfam05891 Hydroxy-O-Methy Puta 70.8 8.3 0.00021 18.7 5.8 147 81-301 58-204 (217)
101 KOG1774 consensus 70.7 1.8 4.7E-05 23.2 1.0 38 16-53 40-83 (88)
102 PRK00121 trmB tRNA (guanine-N( 67.8 9.5 0.00024 18.3 5.6 44 76-128 53-96 (229)
103 KOG4300 consensus 67.7 7.1 0.00018 19.2 3.5 50 74-132 72-121 (252)
104 pfam00891 Methyltransf_2 O-met 67.0 9.9 0.00025 18.2 5.0 61 50-118 68-133 (239)
105 TIGR00091 TIGR00091 tRNA (guan 63.5 8.2 0.00021 18.8 3.1 135 78-239 20-171 (216)
106 COG3876 Uncharacterized protei 63.2 1.9 4.8E-05 23.1 -0.1 221 27-258 75-324 (409)
107 COG0802 Predicted ATPase or ki 63.0 8.5 0.00022 18.7 3.2 56 54-119 9-66 (149)
108 KOG0821 consensus 62.2 9.3 0.00024 18.4 3.3 43 73-124 45-87 (326)
109 COG4122 Predicted O-methyltran 60.4 13 0.00033 17.4 6.4 49 79-134 60-108 (219)
110 pfam06080 DUF938 Protein of un 60.3 10 0.00026 18.1 3.2 63 218-293 117-185 (201)
111 PRK01581 speE spermidine synth 59.8 13 0.00034 17.4 4.3 43 78-128 139-181 (363)
112 COG4301 Uncharacterized conser 58.9 14 0.00035 17.3 7.2 45 78-126 78-122 (321)
113 COG1217 TypA Predicted membran 58.5 1.3 3.3E-05 24.3 -1.7 52 43-99 319-371 (603)
114 pfam01488 Shikimate_DH Shikima 56.7 15 0.00038 17.0 6.3 44 74-124 7-50 (134)
115 KOG2899 consensus 55.5 11 0.00028 17.9 2.7 195 78-296 58-268 (288)
116 COG2230 Cfa Cyclopropane fatty 54.5 16 0.00041 16.8 8.3 178 47-296 43-222 (283)
117 TIGR01444 fkbM_fam methyltrans 53.9 16 0.00042 16.7 4.1 48 81-135 1-49 (142)
118 KOG0212 consensus 53.2 2.8 7.3E-05 21.9 -0.6 26 137-162 188-213 (675)
119 TIGR02081 metW methionine bios 52.1 11 0.00028 17.9 2.2 43 81-124 16-58 (205)
120 PRK08255 salicylyl-CoA 5-hydro 51.5 16 0.0004 16.8 3.0 25 278-302 558-582 (770)
121 KOG2918 consensus 51.4 18 0.00046 16.5 6.1 151 51-230 59-218 (335)
122 PRK03612 spermidine synthase; 50.7 18 0.00047 16.4 4.3 95 19-128 226-335 (516)
123 TIGR02407 ectoine_ectB diamino 50.4 12 0.00031 17.6 2.3 27 214-241 209-235 (413)
124 TIGR01254 sfuA ABC transporter 49.5 6.8 0.00017 19.3 0.8 10 234-243 101-110 (324)
125 COG4076 Predicted RNA methylas 48.1 20 0.00051 16.1 3.7 40 81-130 35-74 (252)
126 TIGR01934 MenG_MenH_UbiE ubiqu 48.0 20 0.00052 16.1 4.8 105 77-187 42-157 (242)
127 PRK11088 rrmA 23S rRNA methylt 47.8 20 0.00052 16.1 7.7 69 48-126 60-128 (272)
128 KOG3010 consensus 47.4 21 0.00053 16.0 4.9 38 81-128 36-73 (261)
129 PRK06922 hypothetical protein; 47.3 21 0.00053 16.0 3.9 40 81-128 423-462 (679)
130 COG5459 Predicted rRNA methyla 47.2 6.9 0.00018 19.3 0.6 141 18-167 28-205 (484)
131 TIGR00740 TIGR00740 methyltran 45.2 22 0.00057 15.8 5.7 86 42-133 8-110 (247)
132 pfam03602 Cons_hypoth95 Conser 44.6 23 0.00058 15.7 7.1 85 34-133 5-89 (181)
133 TIGR00406 prmA ribosomal prote 43.2 24 0.00061 15.6 6.8 56 67-131 184-240 (330)
134 PTZ00138 small nuclear ribonuc 42.4 3.3 8.4E-05 21.5 -1.7 14 20-33 47-60 (89)
135 TIGR00503 prfC peptide chain r 42.2 25 0.00063 15.5 4.0 24 50-73 209-232 (530)
136 COG4108 PrfC Peptide chain rel 41.5 24 0.00062 15.6 2.6 24 50-73 209-232 (528)
137 pfam01269 Fibrillarin Fibrilla 41.4 25 0.00064 15.4 3.2 58 51-120 51-108 (229)
138 TIGR02653 Lon_rel_chp conserve 41.4 11 0.00028 17.9 0.8 259 9-297 324-611 (677)
139 cd01562 Thr-dehyd Threonine de 40.9 26 0.00066 15.4 6.7 32 66-99 54-85 (304)
140 pfam03352 Adenine_glyco Methyl 40.3 26 0.00066 15.4 2.6 30 279-308 138-167 (179)
141 TIGR01734 D-ala-DACP-lig D-ala 40.0 27 0.00068 15.3 4.9 81 7-101 229-314 (513)
142 KOG1500 consensus 39.5 27 0.00069 15.2 5.3 65 81-155 180-249 (517)
143 KOG4278 consensus 39.4 27 0.00069 15.2 6.5 30 268-297 209-238 (1157)
144 KOG1252 consensus 39.4 27 0.00069 15.2 2.8 91 72-172 95-193 (362)
145 KOG2793 consensus 39.3 14 0.00035 17.2 1.1 13 78-90 86-98 (248)
146 KOG1271 consensus 39.1 27 0.0007 15.2 4.0 91 19-125 15-106 (227)
147 KOG0384 consensus 39.0 15 0.00037 17.1 1.2 79 43-129 359-439 (1373)
148 TIGR02716 C20_methyl_CrtF C-20 38.9 16 0.0004 16.9 1.3 80 18-102 81-173 (306)
149 TIGR01546 GAPDH-II_archae glyc 37.9 20 0.00052 16.1 1.8 19 209-227 131-149 (335)
150 KOG2328 consensus 37.2 15 0.00039 16.9 1.1 18 49-66 191-208 (702)
151 PRK10353 3-methyl-adenine DNA 37.2 29 0.00075 15.0 3.3 55 253-308 117-172 (189)
152 KOG2651 consensus 37.1 29 0.00075 15.0 5.7 39 81-128 156-194 (476)
153 cd06448 L-Ser-dehyd Serine deh 37.0 30 0.00075 15.0 7.7 14 80-93 52-65 (316)
154 PRK04266 fibrillarin; Provisio 36.2 30 0.00077 14.9 2.6 59 51-122 50-108 (226)
155 pfam05401 NodS Nodulation prot 35.9 31 0.00078 14.9 5.6 76 73-159 38-116 (201)
156 COG2818 Tag 3-methyladenine DN 35.9 31 0.00078 14.9 2.8 31 279-309 144-174 (188)
157 KOG2950 consensus 35.3 22 0.00056 15.8 1.6 15 19-33 97-111 (348)
158 pfam02527 GidB rRNA small subu 35.3 31 0.0008 14.8 6.6 62 63-134 31-96 (184)
159 TIGR01082 murC UDP-N-acetylmur 35.0 4.2 0.00011 20.7 -2.1 28 234-261 355-398 (491)
160 cd01718 Sm_E The eukaryotic Sm 34.1 6.3 0.00016 19.6 -1.3 32 19-51 38-75 (79)
161 TIGR00497 hsdM type I restrict 34.0 33 0.00084 14.7 3.0 263 5-302 154-436 (516)
162 TIGR00577 fpg formamidopyrimid 33.7 32 0.00082 14.7 2.3 69 232-306 101-178 (292)
163 PRK11207 tellurite resistance 33.2 34 0.00086 14.6 6.9 44 78-131 30-73 (198)
164 PRK09853 putative selenate red 32.5 22 0.00057 15.8 1.3 31 18-52 7-38 (1032)
165 PRK10137 predicted glycosyl hy 31.7 36 0.00091 14.4 3.6 39 296-334 573-615 (781)
166 TIGR03315 Se_ygfK putative sel 31.5 23 0.00059 15.7 1.2 20 81-102 668-687 (1012)
167 PRK13439 consensus 31.2 36 0.00093 14.4 4.2 111 48-161 47-165 (180)
168 pfam05148 Methyltransf_8 Hypot 30.8 33 0.00085 14.6 1.9 22 75-96 64-85 (214)
169 KOG3178 consensus 30.8 37 0.00094 14.3 4.7 57 42-99 134-198 (342)
170 PTZ00146 fibrillarin; Provisio 30.7 37 0.00094 14.3 2.8 33 150-182 68-100 (296)
171 TIGR02688 TIGR02688 conserved 30.3 21 0.00054 15.9 0.9 63 17-90 150-229 (470)
172 PTZ00299 homoserine kinase; Pr 30.2 38 0.00096 14.2 3.9 20 277-296 243-262 (336)
173 PRK00107 gidB glucose-inhibite 29.1 39 0.001 14.1 6.1 65 61-133 49-116 (216)
174 pfam02875 Mur_ligase_C Mur lig 28.7 3.5 9E-05 21.3 -3.4 51 232-282 11-64 (87)
175 COG3897 Predicted methyltransf 27.9 28 0.0007 15.2 1.1 61 20-93 23-94 (218)
176 KOG2915 consensus 27.9 41 0.0011 14.0 10.6 55 71-133 98-153 (314)
177 TIGR01359 UMP_CMP_kin_fam UMP- 26.9 43 0.0011 13.9 2.9 40 85-135 8-47 (189)
178 TIGR03015 pepcterm_ATPase puta 26.9 43 0.0011 13.9 5.1 59 35-101 4-68 (269)
179 pfam05209 MinC_N Septum format 26.8 43 0.0011 13.8 3.6 33 274-306 53-85 (95)
180 TIGR02763 chlamy_scaf scaffold 26.7 14 0.00035 17.3 -0.7 22 151-172 43-64 (127)
181 pfam07942 N2227 N2227-like pro 26.2 44 0.0011 13.8 2.4 194 53-295 32-237 (268)
182 COG0266 Nei Formamidopyrimidin 26.1 37 0.00095 14.3 1.5 57 243-305 108-165 (273)
183 PRK12473 hypothetical protein; 26.0 44 0.0011 13.8 3.1 84 76-162 28-122 (193)
184 TIGR02417 fruct_sucro_rep D-fr 25.9 18 0.00046 16.5 -0.2 25 49-75 65-90 (335)
185 KOG2960 consensus 25.7 45 0.0011 13.7 2.5 104 45-188 45-151 (328)
186 pfam03291 Pox_MCEL mRNA cappin 25.6 45 0.0012 13.7 9.5 188 78-304 63-273 (327)
187 COG0563 Adk Adenylate kinase a 25.2 41 0.001 14.0 1.6 15 85-99 9-23 (178)
188 COG4531 ZnuA ABC-type Zn2+ tra 25.0 21 0.00053 16.0 0.0 67 223-298 198-267 (318)
189 pfam03867 FTZ Fushi tarazu (FT 24.4 33 0.00084 14.6 1.0 10 274-283 252-261 (264)
190 COG0809 QueA S-adenosylmethion 24.0 43 0.0011 13.8 1.5 87 148-242 104-210 (348)
191 PRK13436 F0F1 ATP synthase sub 23.9 48 0.0012 13.5 3.0 110 48-161 47-164 (179)
192 PRK02256 putative aminopeptida 23.9 49 0.0012 13.5 6.6 30 6-38 43-72 (459)
193 KOG2584 consensus 23.8 49 0.0012 13.5 2.4 22 5-26 147-168 (522)
194 PRK13609 diacylglycerol glucos 23.6 49 0.0013 13.5 6.9 20 224-243 220-239 (388)
195 TIGR01935 NOT-MenG RraA family 22.9 30 0.00075 15.0 0.5 32 280-311 78-112 (155)
196 COG1679 Predicted aconitase [G 22.5 47 0.0012 13.6 1.5 29 219-247 229-257 (403)
197 KOG1661 consensus 22.1 53 0.0013 13.3 7.5 108 8-132 12-130 (237)
198 TIGR02070 mono_pep_trsgly mono 22.0 53 0.0013 13.3 2.2 48 109-157 23-75 (228)
199 PRK06815 hypothetical protein; 20.7 56 0.0014 13.1 5.8 19 81-99 71-89 (318)
200 cd01428 ADK Adenylate kinase ( 20.3 57 0.0015 13.0 4.4 30 85-125 8-37 (194)
201 PRK10909 rsmD 16S rRNA m(2)G96 20.3 57 0.0015 13.0 4.8 68 50-133 31-98 (198)
202 TIGR01228 hutU urocanate hydra 20.3 51 0.0013 13.4 1.2 42 221-269 296-338 (547)
No 1
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=0 Score=678.06 Aligned_cols=353 Identities=37% Similarity=0.609 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 48999999999818980499999987108987864689888888886457671179999999999999998388876214
Q gi|254780410|r 3 NKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRL 82 (362)
Q Consensus 3 ~~L~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~i 82 (362)
..+..+++..|+.+|||||++||++|||+|++|||+++.+||+.||||||||+|++||++||.|++++|++++.|.++.|
T Consensus 2 ~~~~~~~~~~i~~~g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l 81 (370)
T COG1565 2 MLLALIIRALIAQGGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL 81 (370)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 53789999998359973399999999718887650230112445874524426889999999999999998368998448
Q ss_pred EEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCC-CEEEEEECCCCC
Q ss_conf 1007864689888799997418564301210236369789999986411102310110434444569-569998122887
Q gi|254780410|r 83 VELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLG-FTFLVANEFFDS 161 (362)
Q Consensus 83 vE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~-~~iiiaNE~lDA 161 (362)
||+|||+|+||+|||+++.++.|++++.++|+|||+||.|+++||++|+...++++|.+..+++|.. ++|++|||||||
T Consensus 82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~~~~~~~~~~e~~p~~~~~i~~~NElfDA 161 (370)
T COG1565 82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATEDLIRWVEWVEDLPKKFPGIVVSNELFDA 161 (370)
T ss_pred EEECCCCCHHHHHHHHHHHHHCHHHHHHCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECHHHCC
T ss_conf 99679967699999999987597877305599992598999999998743321116676687544667569985100023
Q ss_pred CCEEEEEEECCCCEEEEEEEEECCCEEEC-CCCCCCCCCCCCC--CCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 52358999156646899899607953522-5764343223463--31656841127934789999999976205705999
Q gi|254780410|r 162 LPIKQFVMTEHGIRERMIDIDQHDSLVFN-IGDHEIKSNFLTC--SDYFLGAIFENSPCRDREMQSISDRLACDGGTAIV 238 (362)
Q Consensus 162 lPv~~~~~~~~~w~E~~V~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~ 238 (362)
||||||++++++|+|++|.-+.++.+.|. .......+.+++. ....+|+++|++|++..|++.|+.++.. |.+|+
T Consensus 162 lPv~q~~~~~~~~~Er~~~~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~L~r--G~~l~ 239 (370)
T COG1565 162 LPVEQFIRTKGLFVERVVVLDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERLER--GVFLF 239 (370)
T ss_pred CCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHH--CEEEE
T ss_conf 2122676067458876504574333100422222111311575542124782454078799999999999861--76999
Q ss_pred ECCCCC------CCCCCCEEEE-ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHHHHCCHHHHH
Q ss_conf 624336------8588880776-405767670001000345312688999999996898363323389999978979999
Q gi|254780410|r 239 IDYGYL------QSRVGDTLQA-VKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIWQRA 311 (362)
Q Consensus 239 iDYGy~------~~r~~gTLr~-y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~~r~ 311 (362)
|||||. +.|..||++| |++|.++||+.+||++||||||||++|+..++++|+++.++.||++||+++||.+|+
T Consensus 240 iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~g~~~~~~~tQ~~FLl~~Gl~~rl 319 (370)
T COG1565 240 IDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLEVLGFKTQGDFLLDLGLLERL 319 (370)
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 83488654344544677447999986313995557772204564058999999998398720314378999856688899
Q ss_pred HHHHHCCCCH--HHHHHHHHHHHHCCCCHHHCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9987084627--9999999998614688223163269999807888899888
Q gi|254780410|r 312 FSLMKQTARK--DILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPFV 361 (362)
Q Consensus 312 ~~l~~~~~~~--~~~~~~~~rli~~l~~p~~MGe~FKVl~~sk~~~~~~~f~ 361 (362)
..+.+..... ...++.++||+ +|++|||+||||+++|+.....||-
T Consensus 320 ~~l~~~~~~~~~~~~~~~v~rLi----~p~~MGelFkVl~~~k~~~~~~~~~ 367 (370)
T COG1565 320 ATLSAGKDDARYLKIAAQVKRLI----SPGGMGELFKVLAFGKKLKIDLPFA 367 (370)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHH----CCHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 98746897478999999999861----9433321213555526655565544
No 2
>KOG2901 consensus
Probab=100.00 E-value=0 Score=478.43 Aligned_cols=340 Identities=37% Similarity=0.626 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 89999999998189804999999871089878646898888888864576711799999999999999983888762141
Q gi|254780410|r 4 KLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLV 83 (362)
Q Consensus 4 ~L~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~iv 83 (362)
.|+..|..+|+..||||.++||..+|.+|.+|||++++.+|++|||+||||+|++||++++.|.+..|.++|.|..+++|
T Consensus 34 ~l~k~L~~ki~~sgpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~ew~~~g~~~~~qLv 113 (415)
T KOG2901 34 HLVKHLKSKIKSTGPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSEWEQMGRPERFQLV 113 (415)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEHHHHCCCCCEEEE
T ss_conf 79999986510568713888899987373123031287750145765780099999875310577751642896624578
Q ss_pred EECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH--------------HCCCCHHCCCCHHHCCCC
Q ss_conf 007864689888799997418564301210236369789999986411--------------102310110434444569
Q gi|254780410|r 84 ELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA--------------SYGDKINWYTSLADVPLG 149 (362)
Q Consensus 84 E~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~--------------~~~~~v~w~~~l~~~~~~ 149 (362)
|+|||+|+||.|+|+.+.++. -..+..++||.|+.|.+.|.++|+ ..+.++.|+.++.++|.+
T Consensus 114 elgpgrgtl~~dvl~~~~kf~---~~~vs~hLve~S~~ls~lq~~~l~~~~~~~s~~~~~tt~sg~~~~w~~sl~dvp~g 190 (415)
T KOG2901 114 ELGPGRGTLMADVLRVLTKFK---DEDLSVHLVEVSPALSKLQAQNLCCTDESLSEYKKGSTLSGTPIHWHRTLQDVPSG 190 (415)
T ss_pred EECCCHHHHHHHHHHHHHHHC---CCEEEEEEEEECHHHHHHHHCCEEEEECCHHHHHHCCCCCCCCHHCCCCHHHCCCC
T ss_conf 851655577888999999856---85002788882576788764461676031777762454456731103683235785
Q ss_pred CEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCHHHHHHHHHHHHH
Q ss_conf 569998122887523589991566468998996079535225764343223463-3165684112793478999999997
Q gi|254780410|r 150 FTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTC-SDYFLGAIFENSPCRDREMQSISDR 228 (362)
Q Consensus 150 ~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~E~~~~~~~~~~~i~~~ 228 (362)
.++|+|||||||+|||+|.+...+|+|++|+++++..+++++++.+++...... .....-...|.++....-+..++++
T Consensus 191 ~s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~s~tp~~~~~~~~~~e~r~~~e~~~es~~~v~~~~~r 270 (415)
T KOG2901 191 FTLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLMPATDETREKMEHSPESGKSVDLLAKR 270 (415)
T ss_pred EEEEEHHHHHHCCCCHHHCCCCCCCCEEEEECCCCCCEEEECCCCCCHHHHCCCCCCCCCHHHEEECCCCCCCHHHHHHH
T ss_conf 48977677543276221033787710467722576417885588887566407789852201032064436328899988
Q ss_pred HHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHHHHCCHH
Q ss_conf 62057059996243368588880776405767670001000345312688999999996898363323389999978979
Q gi|254780410|r 229 LACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIW 308 (362)
Q Consensus 229 l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~ 308 (362)
+...+|.+|++|||....+ -+|+|+|++||.+|+|.+||..|+||+|||+.+..+|+ .+....|+.+|+.||.++||.
T Consensus 271 i~~~gG~Alivdygh~g~~-TDtFRaf~~HKlhDvL~~pg~adLtadVdf~~~~~~a~-~~v~~~gp~~q~~fl~~~gI~ 348 (415)
T KOG2901 271 IGSDGGGALIIDYGHDGIK-TDSFRAFKKHKLVDILDMPGSADLTADVDFTYLRHAAE-GNVDKNGPRKQHCFLNGMGIE 348 (415)
T ss_pred HHCCCCEEEEEECCCCCCC-CHHHHHHHHCCCHHHCCCCCCCCCEEECCHHHHHHHHC-CCEEECCCHHHHHHHHCCCCH
T ss_conf 7425871788822678753-04777764133300103777544112115688777652-650113724665677606613
Q ss_pred HHHHHHHHCCCCHH---HHHHHHHHHHHCCCCHHHCCCEEEEEEEEC
Q ss_conf 99999870846279---999999998614688223163269999807
Q gi|254780410|r 309 QRAFSLMKQTARKD---ILLDSVKRLVSTSADKKSMGELFKILVVSH 352 (362)
Q Consensus 309 ~r~~~l~~~~~~~~---~~~~~~~rli~~l~~p~~MGe~FKVl~~sk 352 (362)
.|+..|+++.+..+ .+++... +|++|..||++|+.+++..
T Consensus 349 ~RLk~LL~~~n~~~~~eqL~~GY~----mL~np~~mg~r~~~~a~~p 391 (415)
T KOG2901 349 IRLKILLDKSNEPSQQEQLLQGYD----MLMNPKKMGERFNFFALLP 391 (415)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH----HHCCHHHCCCCCCHHHHCC
T ss_conf 229999875378789999987699----8549364151018377585
No 3
>pfam02636 DUF185 Uncharacterized ACR, COG1565. This family contains several uncharacterized proteins. One member has been described as an ATP synthase beta subunit transcription termination factor rho protein.
Probab=100.00 E-value=0 Score=426.83 Aligned_cols=232 Identities=37% Similarity=0.600 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCHHCC
Q ss_conf 999999999998388876214100786468988879999741856430121023636978999998641110-2310110
Q gi|254780410|r 62 MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY-GDKINWY 140 (362)
Q Consensus 62 ~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~-~~~v~w~ 140 (362)
+||+|+.+.|+++|+|.+++|||+|||+|+||+|||++++++.|++++.++|++||+||.|++.|+++|+.. ...++|+
T Consensus 1 ~ia~~l~~~w~~~g~p~~~~ivE~G~G~G~L~~dil~~l~~~~p~~~~~~~y~lvE~s~~L~~~Q~~~L~~~~~~~~~w~ 80 (240)
T pfam02636 1 LLARWLAQLWKALGSPPPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLAGSADLLVKWL 80 (240)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEH
T ss_conf 97899999999829899708999799718999999999987594657534699980899999999997521479760621
Q ss_pred CCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCC---CC-CCCCCCCCCEECCCH
Q ss_conf 43444456956999812288752358999156646899899607953522576434322---34-633165684112793
Q gi|254780410|r 141 TSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSN---FL-TCSDYFLGAIFENSP 216 (362)
Q Consensus 141 ~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~g~~~E~~~ 216 (362)
+++++.| .++|||||||||||||++|++++++|+|++|++++++++.|...+...+.. +. ...+.++|+++|+++
T Consensus 81 ~~l~~~~-~~~iiiaNE~fDalP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ei~~ 159 (240)
T pfam02636 81 DELPELP-FPGVVLANEVFDALPVDLFRRDGGGWRERYVGLDEDGKFVFELGPLSTPSLSDYLPELALNLPEGYRLEIPP 159 (240)
T ss_pred HCCCCCC-CCEEEEEEHHCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECH
T ss_conf 1121178-764898400105630799999699799999997789927986678788779999987344678995899688
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCC--CCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 478999999997620570599962433685--888807764057676-70001000345312688999999996898363
Q gi|254780410|r 217 CRDREMQSISDRLACDGGTAIVIDYGYLQS--RVGDTLQAVKGHTYV-SPLVNPGQADLSSHVDFQRLSSIAILYKLYIN 293 (362)
Q Consensus 217 ~~~~~~~~i~~~l~~~~G~~L~iDYGy~~~--r~~gTLr~y~~H~~~-dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~ 293 (362)
.+..|++++++.+. +|.+|+|||||... |++||||||++|+.+ |||.+||++||||||||++|++++++.|+++.
T Consensus 160 ~~~~~~~~i~~~l~--~g~~l~iDYG~~~~~~r~~gtl~~~~~H~~~~d~l~~pG~~DIT~~VdF~~L~~~~~~~~~~~~ 237 (240)
T pfam02636 160 AAEAFLEQLAERLP--RGALLIIDYGYPASEYRNNGTLRAYRRHRVHDDPLVNPGEADITAHVDFTALAEAAREAGLKVL 237 (240)
T ss_pred HHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 89999999999984--7968999935765555889828999788888983466787864464189999999998899887
Q ss_pred CCE
Q ss_conf 323
Q gi|254780410|r 294 GLT 296 (362)
Q Consensus 294 g~~ 296 (362)
|++
T Consensus 238 g~~ 240 (240)
T pfam02636 238 GFT 240 (240)
T ss_pred ECC
T ss_conf 229
No 4
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=97.25 E-value=0.0019 Score=43.65 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=50.8
Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf 98888888864576711799999999999999983888762141007864689888799997418564301210236369
Q gi|254780410|r 40 CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362)
Q Consensus 40 ~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362)
+..+|. .|.+.+.+ +..+++ ..+....-.|+|+|||.|.|...+++. .-+++.||+-
T Consensus 5 kK~lGQ--nFL~d~~i--------~~kIv~---~~~~~~~d~VlEIGPG~G~LT~~L~~~----------~~~v~aiE~D 61 (258)
T pfam00398 5 RRSYGQ--NFLTNKKV--------INRIVD---KANLQESDTVLEIGPGKGALTEELAKR----------AKQVVAIEID 61 (258)
T ss_pred CCCCCC--CCCCCHHH--------HHHHHH---HCCCCCCCEEEEECCCHHHHHHHHHHC----------CCCEEEEECC
T ss_conf 566775--31389999--------999999---708999997999799623999999961----------6947999544
Q ss_pred HHHHHHHHHHHHHCCCCHHCC
Q ss_conf 789999986411102310110
Q gi|254780410|r 120 ERLTLIQKKQLASYGDKINWY 140 (362)
Q Consensus 120 ~~l~~~Q~~~l~~~~~~v~w~ 140 (362)
+.|.+.-++++... .++.++
T Consensus 62 ~~l~~~L~~~~~~~-~~~~ii 81 (258)
T pfam00398 62 PRLAKRLQKKLALH-PNVEVV 81 (258)
T ss_pred HHHHHHHHHHHCCC-CCEEEE
T ss_conf 77999999864428-977999
No 5
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=97.12 E-value=0.0035 Score=41.81 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEE
Q ss_conf 86468988888888645767117999999999999999838887621410078646898887999974185643012102
Q gi|254780410|r 35 GYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIY 114 (362)
Q Consensus 35 GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ 114 (362)
|.+. +..+|. .|.+.+.+- ..+++. .+....-.|+|+|||.|.|..-+++. .-.++
T Consensus 10 ~~~~-kK~lGQ--nFL~d~~ii--------~kIv~~---~~~~~~d~VlEIGpG~G~LT~~Ll~~----------~~~v~ 65 (267)
T PRK00274 10 GHRA-KKSLGQ--NFLIDENII--------DKIVRA---ADLQPGDRVLEIGPGLGALTEPLLER----------AAKVT 65 (267)
T ss_pred CCCC-CCCCCC--CCCCCHHHH--------HHHHHH---CCCCCCCEEEEECCCCCHHHHHHHHH----------CCCEE
T ss_conf 9998-877782--214898999--------999996---08999990799638888899999962----------68058
Q ss_pred EEECCHHHHHHHHH
Q ss_conf 36369789999986
Q gi|254780410|r 115 MVETSERLTLIQKK 128 (362)
Q Consensus 115 ivE~s~~l~~~Q~~ 128 (362)
.||+-+.+.+..++
T Consensus 66 aiEiD~~l~~~L~~ 79 (267)
T PRK00274 66 AIEIDRDLAPILRE 79 (267)
T ss_pred EEECCHHHHHHHHH
T ss_conf 86368899999850
No 6
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.99 E-value=0.0083 Score=39.24 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH--HHCC
Q ss_conf 99999999999999983888-76214100786468988879999741856430121023636978999998641--1102
Q gi|254780410|r 58 IFGEMLAIFLICAWEQHGFP-SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL--ASYG 134 (362)
Q Consensus 58 ~Fg~~ia~~~~~~~~~~~~p-~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l--~~~~ 134 (362)
.+.++|...+.+.-...... ..+.|+=+|||+|-|..-.|+.....+ ...+++.||++|...-.-++++ ...+
T Consensus 165 ~Ye~AI~~aL~D~~~~~~~~~~~~vI~VvGAGRGPLV~~~l~A~~~~~----~~v~i~AVEKNpnA~vtL~~r~n~~~W~ 240 (447)
T pfam05185 165 QYERAIRKALLDWVPEKKKTSGTLVILVVGAGRGPLVDRALRAAEETG----RKVKIYAVEKNPNAVVTLQKRVNFEEWG 240 (447)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC----CCEEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 999999999986330013677756999985896489999999999819----9669999956877999999985054317
Q ss_pred CCHHCCC-CHHHC--CCCCEEEEEECCCCCC
Q ss_conf 3101104-34444--5695699981228875
Q gi|254780410|r 135 DKINWYT-SLADV--PLGFTFLVANEFFDSL 162 (362)
Q Consensus 135 ~~v~w~~-~l~~~--~~~~~iiiaNE~lDAl 162 (362)
++|+.+. ++-++ |....+++| |+|-.|
T Consensus 241 ~~V~ii~~DMR~w~~p~k~Di~VS-ELLGSF 270 (447)
T pfam05185 241 DKVTLISSDMREWKGPEKADILVS-ELLGSF 270 (447)
T ss_pred CCEEEEECCHHCCCCCCCCCEEEE-ECCCCC
T ss_conf 806999080005799877358975-211666
No 7
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=96.95 E-value=0.0062 Score=40.11 Aligned_cols=69 Identities=19% Similarity=0.377 Sum_probs=47.1
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHH
Q ss_conf 88888886457671179999999999999998388876214100786468988879999741856430121023636978
Q gi|254780410|r 42 PFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121 (362)
Q Consensus 42 ~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~ 121 (362)
.+|. .|.+.+.+ ...+++ ..+..+.-.|+|+|||.|.|...+++. .-+++.||+-+.
T Consensus 15 ~lGQ--nFL~D~~i--------~~~Iv~---~a~~~~~d~VlEIGPG~G~LT~~Ll~~----------~~~v~aiEiD~~ 71 (296)
T PTZ00338 15 KFGQ--HILKNPLV--------LDKIVE---KAAIKPTDTVLEIGPGTGNLTEKLLQL----------AKKVIAIEIDPR 71 (296)
T ss_pred CCCC--CCCCCHHH--------HHHHHH---HCCCCCCCEEEEECCCCHHHHHHHHHC----------CCCEEEEEECHH
T ss_conf 7762--20589899--------999999---607898995799668542999999835----------891799994889
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999998641110
Q gi|254780410|r 122 LTLIQKKQLASY 133 (362)
Q Consensus 122 l~~~Q~~~l~~~ 133 (362)
|...-++++...
T Consensus 72 l~~~L~~~~~~~ 83 (296)
T PTZ00338 72 MVAELKKRFQNS 83 (296)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998514
No 8
>PRK06202 hypothetical protein; Provisional
Probab=96.86 E-value=0.0076 Score=39.52 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=56.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC--CCHHHCCCCCEEEEE
Q ss_conf 762141007864689888799997418564301210236369789999986411102310110--434444569569998
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY--TSLADVPLGFTFLVA 155 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~--~~l~~~~~~~~iiia 155 (362)
.++.|+|+|.|.|.++..+.+..++... .+++.-++.||...+.-++.-+..+..+... ..++..+....+|+|
T Consensus 61 r~~~VLDlGcG~Gdl~~~lar~a~~~g~----~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l~~~~~~~DvV~~ 136 (233)
T PRK06202 61 RPLTVLDLGCGGGDLAIDLARWARRDGL----RLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDELVAEGERFDVVYS 136 (233)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC----CEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCEEEH
T ss_conf 8728998347875799999999975599----638999779889999998734036983699734320245788757603
Q ss_pred ECCCCCCCEEE
Q ss_conf 12288752358
Q gi|254780410|r 156 NEFFDSLPIKQ 166 (362)
Q Consensus 156 NE~lDAlPv~~ 166 (362)
|.|+-=||-.+
T Consensus 137 sl~LHHf~d~q 147 (233)
T PRK06202 137 NHFLHHLDDAD 147 (233)
T ss_pred HHHHHCCCHHH
T ss_conf 24686498299
No 9
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.71 E-value=0.0083 Score=39.27 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=37.7
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 9838887621410078646898887999974185643012102363697899999864111
Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362)
Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362)
+..+..+.-.|+|+|||.|.|...+++. .-+++.+|+-+.|.+.-+++++.
T Consensus 7 ~~a~~~~~d~VlEIGPG~G~LT~~Ll~~----------~~~v~aiE~D~~l~~~L~~~~~~ 57 (169)
T smart00650 7 RAANLRPGDTVLEIGPGKGALTEELLER----------AARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHH----------CCCCCEEECCHHHHHHHHHHHCC
T ss_conf 8638999497999689702999999973----------16353163788999999986410
No 10
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.66 E-value=0.011 Score=38.40 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111
Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362)
Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362)
|+.=.-|+..-.+++.+++..+....+-.|+++|.|+|.+..-+.+.+ |+ .++.-|+.|+.+.+.-+++.+.
T Consensus 6 p~~Y~rf~~~r~rp~~DLl~~l~~~~~~~vlDlGCG~G~~t~~l~~r~----p~----a~v~GiD~S~~Ml~~Ar~~~~~ 77 (252)
T PRK01683 6 PSLYLQFEAERTRPAVELLARVPLENVEYVADLGCGPGNSTALLHQRW----PA----ARITGIDSSPAMLAEARQALPD 77 (252)
T ss_pred HHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC----CC----CEEEEEECCHHHHHHHHHHCCC
T ss_conf 999998887764639999841888899989993774989999999977----99----8799998989999999975899
Q ss_pred CCCCHHCC-CCHHHCC--CCCEEEEEECCCCCCCE
Q ss_conf 02310110-4344445--69569998122887523
Q gi|254780410|r 133 YGDKINWY-TSLADVP--LGFTFLVANEFFDSLPI 164 (362)
Q Consensus 133 ~~~~v~w~-~~l~~~~--~~~~iiiaNE~lDAlPv 164 (362)
+.+. .++.+.+ ....+|+||=.|-=+|=
T Consensus 78 ----~~f~~~D~~~~~~~~~~D~ifSNaalhW~~d 108 (252)
T PRK01683 78 ----CQFVEADIRNWQPEQALDLIYANASLQWLPD 108 (252)
T ss_pred ----CEEEECCHHCCCCCCCCCEEEEEEEHHHCCC
T ss_conf ----8387250420787678788956100450787
No 11
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.48 E-value=0.011 Score=38.30 Aligned_cols=72 Identities=26% Similarity=0.406 Sum_probs=46.1
Q ss_pred CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC
Q ss_conf 89888888886457671179999999999999998388876214100786468988879999741856430121023636
Q gi|254780410|r 39 TCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362)
Q Consensus 39 ~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362)
+-..+|. ++ |+ |+.-++..+. ..+-.+...|+|+|||+|-+.+.||.. ...|+ ...++|.
T Consensus 22 ~PrtVGa----I~-Ps-Ss~lA~~M~s-------~I~pesglpVlElGPGTGV~TkaIL~~--gv~~~-----~L~~iE~ 81 (194)
T COG3963 22 NPRTVGA----IL-PS-SSILARKMAS-------VIDPESGLPVLELGPGTGVITKAILSR--GVRPE-----SLTAIEY 81 (194)
T ss_pred CCCEEEE----EC-CC-CHHHHHHHHH-------CCCCCCCCEEEEECCCCCHHHHHHHHC--CCCCC-----CEEEEEE
T ss_conf 9731113----55-78-5799999984-------348445976477769866768999965--79954-----3689982
Q ss_pred CHHHHHHHHHHH
Q ss_conf 978999998641
Q gi|254780410|r 119 SERLTLIQKKQL 130 (362)
Q Consensus 119 s~~l~~~Q~~~l 130 (362)
|+.+...-.++.
T Consensus 82 ~~dF~~~L~~~~ 93 (194)
T COG3963 82 SPDFVCHLNQLY 93 (194)
T ss_pred CHHHHHHHHHHC
T ss_conf 779999999758
No 12
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.39 E-value=0.017 Score=37.09 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=49.0
Q ss_pred CEEECCCC--CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH
Q ss_conf 86457671--1799999999999999983888762141007864689888799997418564301210236369789999
Q gi|254780410|r 48 DFVTAPEI--SQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362)
Q Consensus 48 DF~Tsp~i--s~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362)
||+-.|.+ =.---|+|..+++..+. ..+..|+|+|.|+|.++..++..+ | ..+.+.+++|+.--+.
T Consensus 81 ~f~V~~~VLIPRPETE~LVe~~l~~~~----~~~~~ilDlgtGSGcI~isLa~~~----p----~~~v~a~DiS~~Al~~ 148 (277)
T PRK09328 81 PLFVSPATLIPRPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASER----P----DCEVTAVDRMPDAVAL 148 (277)
T ss_pred EEEECCCEEEECCCHHHHHHHHHHHCC----CCCCEEEEECCCHHHHHHHHHHHC----C----CCEEEEEECCHHHHHH
T ss_conf 898779836408817999999999645----378818995455699999999867----7----9899996489999999
Q ss_pred HHHHHHHCC
Q ss_conf 986411102
Q gi|254780410|r 126 QKKQLASYG 134 (362)
Q Consensus 126 Q~~~l~~~~ 134 (362)
-+++...++
T Consensus 149 A~~Na~~~~ 157 (277)
T PRK09328 149 AQRNAQHLA 157 (277)
T ss_pred HHHHHHHCC
T ss_conf 999999809
No 13
>PRK08317 hypothetical protein; Provisional
Probab=96.36 E-value=0.022 Score=36.40 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999999838887621410078646898887999974185643012102363697899999864111023101
Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKIN 138 (362)
Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~ 138 (362)
.+|-...++.++....-.|+|+|.|.|.++..+.+.+ .|+ .+++-++.|+.+.+.-+++......++.
T Consensus 5 ~~~r~~~l~~L~l~pG~~vLDiGcG~G~~~~~la~~~---g~~----~~v~gvD~s~~~l~~a~~~~~~~~~~v~ 72 (241)
T PRK08317 5 RRYRARTFELLAVQPGERVLDVGCGPGNDLRELADRV---GPE----GRVVGIDRSEAMLALARERAAGLLSNVE 72 (241)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH---CCC----CEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 8999999973699997999996641749999999974---999----7899996988999999999862289649
No 14
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=96.36 E-value=0.024 Score=36.16 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 99999999999983888762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 61 ~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
|.|..++..... +.+..|+|+|.|+|.++..+++.+ | ..+.+.+|+|+...+.-+++...++
T Consensus 74 E~Lve~~l~~~~----~~~~~ilDlgtGSG~I~i~la~~~----~----~~~v~~~Dis~~Al~~A~~N~~~~~ 135 (251)
T TIGR03534 74 EELVEAALERLK----KGPLKVLDLGTGSGAIALALAKER----P----DARVTAVDISPEALAVARKNAKRLG 135 (251)
T ss_pred HHHHHHHHHHHC----CCCCEEEEECCCHHHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 999999999731----489869995567169999999967----9----9789999898799999999999809
No 15
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.32 E-value=0.074 Score=32.75 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 76214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
.+..|+++|.|+|.++..+.... |+ .+++.+|+|+...+.-+++...+
T Consensus 121 ~~~~iLDlGtGSG~Iai~la~~~----p~----~~v~a~DiS~~Al~~A~~N~~~~ 168 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF----PE----AEVDAVDISPDALAVAEINIERH 168 (284)
T ss_pred CCCEEEEECCCCHHHHHHHHHHC----CC----CEEEEEECCHHHHHHHHHHHHHH
T ss_conf 77715552168079999999878----99----87999989999999999999860
No 16
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.29 E-value=0.019 Score=36.86 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCEEECCCC--CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHH
Q ss_conf 886457671--179999999999999998388876214100786468988879999741856430121023636978999
Q gi|254780410|r 47 GDFVTAPEI--SQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTL 124 (362)
Q Consensus 47 GDF~Tsp~i--s~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~ 124 (362)
-+|+..|.+ =.-=-|+|-.++...+... +....++|+|.|+|.++..++..+ |. .+.+.+++|+...+
T Consensus 78 ~~f~V~~~VLIPRpETE~LVe~~l~~~~~~--~~~~~~lDlGtGSG~I~isla~~~----p~----~~v~avDiS~~Al~ 147 (285)
T PRK09329 78 LELQVDPRVLIPRQETEILVEKIIGYLQSH--KEIQTFYDVCCGSGCIGLAIKKHC----PH----VHVVLSDICPQALA 147 (285)
T ss_pred CEEEECCCCEECCCHHHHHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHHC----CC----CEEEHHHCCHHHHH
T ss_conf 578868984205960999999999998618--777778884541799999999858----98----65880337699999
Q ss_pred HHHHHHHHCCCCHH
Q ss_conf 99864111023101
Q gi|254780410|r 125 IQKKQLASYGDKIN 138 (362)
Q Consensus 125 ~Q~~~l~~~~~~v~ 138 (362)
.-+++...+..+++
T Consensus 148 ~A~~Na~~~~~~v~ 161 (285)
T PRK09329 148 VAKSNAKSNGLDVD 161 (285)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999997299479
No 17
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.026 Score=35.81 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=46.5
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf 88888888645767117999999999999999838887621410078646898887999974185643012102363697
Q gi|254780410|r 41 NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362)
Q Consensus 41 ~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362)
.++|. .|.+.+.+ . ....+..+....-+|+|+|||.|.|..-+++. ...++.||+-+
T Consensus 6 K~~GQ--nFL~d~~v--------~---~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~----------~~~v~aiEiD~ 62 (259)
T COG0030 6 KRLGQ--NFLIDKNV--------I---DKIVEAANISPGDNVLEIGPGLGALTEPLLER----------AARVTAIEIDR 62 (259)
T ss_pred CCCCC--CCCCCHHH--------H---HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH----------CCEEEEEEECH
T ss_conf 77664--54147879--------9---99998557899986999789877889999960----------69579999688
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999986411
Q gi|254780410|r 121 RLTLIQKKQLA 131 (362)
Q Consensus 121 ~l~~~Q~~~l~ 131 (362)
.|.+.-++++.
T Consensus 63 ~l~~~L~~~~~ 73 (259)
T COG0030 63 RLAEVLKERFA 73 (259)
T ss_pred HHHHHHHHHHC
T ss_conf 99999997506
No 18
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.12 E-value=0.035 Score=35.01 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 999999999999983888762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 60 GEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 60 g~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
.+++...+.. |.... .+..|+++|.|+|.++..+... .|+ .+++.+|+|+..-+.-+++...++
T Consensus 118 ~ELi~~~l~~-~~~~~--~~~rilDlGtGSG~Iaisla~~----~p~----~~v~a~Dis~~AL~vA~~N~~~~~ 181 (307)
T PRK11805 118 AELIEDGFAP-WLEDE--QPTRILDLCTGSGCIAIACAYA----FPD----AEVDAVDISPDALAVAEINIERHG 181 (307)
T ss_pred HHHHHHHHHH-HHCCC--CCCEEEEECCCHHHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 9999999999-73357--8872777427827999999987----899----889998589999999999999838
No 19
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.05 E-value=0.063 Score=33.22 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=50.9
Q ss_pred CEEECCCC-CH-HHHHHHHHHHHHHHHHC------------------CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 86457671-17-99999999999999983------------------888762141007864689888799997418564
Q gi|254780410|r 48 DFVTAPEI-SQ-IFGEMLAIFLICAWEQH------------------GFPSCVRLVELGPGRGIMMLDILRVICKLKPDF 107 (362)
Q Consensus 48 DF~Tsp~i-s~-~Fg~~ia~~~~~~~~~~------------------~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~ 107 (362)
||+.+|.+ -| ---|+|-.++++.+... ..+.+.+|+++|.|+|.++..++..+ |
T Consensus 85 ~F~Vn~~VLIPRPeTE~LVE~vL~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~ILDLGTGSGcIaISLa~e~----p-- 158 (503)
T PRK01544 85 EFIVNKHVLIPRSDTEVLVDVVFQHSQCHSRESGNPEKKQLDSVSKNRNDKFLNILELGTGSGCIAISLLCEL----P-- 158 (503)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC----C--
T ss_conf 6784898335899639999999998642022234531001100001234557727884666799999999867----8--
Q ss_pred HHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 30121023636978999998641110
Q gi|254780410|r 108 FSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 108 ~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
..+.+.+++|+..-+.-+++...+
T Consensus 159 --~a~v~avDIS~~AL~vAk~Na~~~ 182 (503)
T PRK01544 159 --NANVIATDISLDAIEVAKSNAIKY 182 (503)
T ss_pred --CCEEEEEECCHHHHHHHHHHHHHC
T ss_conf --998999989899999999999980
No 20
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.062 Score=33.28 Aligned_cols=70 Identities=19% Similarity=0.409 Sum_probs=46.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCC
Q ss_conf 14100786468988879999741856430121023636978999998641110231011043444456956999812288
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFD 160 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lD 160 (362)
.|+|+|.|+|.+|..+... .|+ .+++.+++|+.-.+.-+++...++. ....++.+ .+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~----~~~----~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~-dlf~ 171 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE----GPD----AEVIAVDISPDALALARENAERNGL------------VRVLVVQS-DLFE 171 (280)
T ss_pred CEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHHHHCC------------CCEEEEEC-CHHH
T ss_conf 1899658831999999961----898----8799998999999999999998289------------74798740-0333
Q ss_pred CCC--EEEEEEEC
Q ss_conf 752--35899915
Q gi|254780410|r 161 SLP--IKQFVMTE 171 (362)
Q Consensus 161 AlP--v~~~~~~~ 171 (362)
+++ ++.++...
T Consensus 172 ~~~~~fDlIVsNP 184 (280)
T COG2890 172 PLRGKFDLIVSNP 184 (280)
T ss_pred CCCCCCCEEEECC
T ss_conf 4688857799689
No 21
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.71 E-value=0.074 Score=32.74 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=50.3
Q ss_pred CCCC-CCCCCCCCC---EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCC
Q ss_conf 6468-988888888---645767117999999999999999838887621410078646898887999974185643012
Q gi|254780410|r 36 YYST-CNPFGAVGD---FVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVL 111 (362)
Q Consensus 36 YY~~-~~~~G~~GD---F~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l 111 (362)
.|.- .-+++.+|+ -+.+|++ + ..+.+.++....-.|+|+|.|+|.-|+=+-+-... .-
T Consensus 40 AY~D~pL~i~~dq~~~sTISqP~i-------V----A~MlElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~-------~G 101 (317)
T PRK13943 40 VYEDIVLVSYDDGEEYSTSSQPSL-------M----ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE-------KG 101 (317)
T ss_pred CCCCCCCCCCCCCCCCEEECHHHH-------H----HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC-------CC
T ss_conf 126765443689974657416899-------9----99999717899986899657743899999998487-------87
Q ss_pred CEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 10236369789999986411102
Q gi|254780410|r 112 SIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 112 ~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
..+-||..+.|.+.-+++|..++
T Consensus 102 ~V~TIE~~~~L~~~Ar~~L~~lG 124 (317)
T PRK13943 102 LVVSVEYSRKICEIAKRNVERLG 124 (317)
T ss_pred EEEEEEECHHHHHHHHHHHHHCC
T ss_conf 59999867999999999999779
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=95.70 E-value=0.023 Score=36.29 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHCC--CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 999999999999999838--88762141007864689888799997418564301210236369789999986411
Q gi|254780410|r 58 IFGEMLAIFLICAWEQHG--FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 58 ~Fg~~ia~~~~~~~~~~~--~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
..=+-+|..+++.+++.+ ...+-.|+|+|+|+|.+-+-+.+.+ ...+++.++.|+.+...-++..+
T Consensus 14 ~~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~--------~~~~~~a~D~~~~ml~~a~~~~~ 81 (272)
T TIGR02072 14 KIQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRF--------PQAELIALDISEEMLAQAKEKLS 81 (272)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHC--------CCCEEHHHHCCHHHHHHHHHHCC
T ss_conf 999999999999887407654455435651268548999999868--------80012333325678999997446
No 23
>PRK11036 putative metallothionein SmtA; Provisional
Probab=95.68 E-value=0.078 Score=32.61 Aligned_cols=89 Identities=13% Similarity=0.253 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC
Q ss_conf 999999999983888762141007864689888799997418564301210236369789999986411102--310110
Q gi|254780410|r 63 LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY 140 (362)
Q Consensus 63 ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~ 140 (362)
+-+-+.+++.+++ +.+..|+++|.|.|.++..+.+. --+...+++|+.+.+.-+++..+.+ .+++|+
T Consensus 30 l~~dl~~~l~~l~-~~plrVLDvG~G~G~~a~~lA~~----------Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v 98 (256)
T PRK11036 30 VWQDLDRLLAELG-PRPLRVLDAGGGEGQTAIKMAEL----------GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFI 98 (256)
T ss_pred HHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999999998469-99983998379877989999977----------997998669999999999998864966127988
Q ss_pred -CCHHHCC----CCCEEEEEECCCCCC
Q ss_conf -4344445----695699981228875
Q gi|254780410|r 141 -TSLADVP----LGFTFLVANEFFDSL 162 (362)
Q Consensus 141 -~~l~~~~----~~~~iiiaNE~lDAl 162 (362)
....+++ ....+|+|++++-=+
T Consensus 99 ~~~~q~l~~~~~~~fDlVlcHaVLE~v 125 (256)
T PRK11036 99 HCAAQDIAQHLETPVDLILFHAVLEWV 125 (256)
T ss_pred ECCHHHHHHHCCCCCCEEEEEHHHHHC
T ss_conf 568998854236886678651367723
No 24
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.61 E-value=0.17 Score=30.30 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHCC-----------CCCHHHHHHHHHCCCCCCCCCC-CCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 489999999998189-----------8049999998710898786468-9888888886457671179999999999999
Q gi|254780410|r 3 NKLIRKIVNLIKKNG-----------QMTVDQYFALCVADPEFGYYST-CNPFGAVGDFVTAPEISQIFGEMLAIFLICA 70 (362)
Q Consensus 3 ~~L~~~i~~~I~~~G-----------~i~f~~fM~~aLy~p~~GYY~~-~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~ 70 (362)
|++.+.+.+.++.++ .++=..|....+-+ =-|.- .-++|. |-++.+|++.- .+
T Consensus 4 ~~~~~MVd~l~r~~~I~d~~Vl~A~~~VpRe~Fvp~~~~~---~AY~D~~lpig~-g~tis~P~~~a-----------~m 68 (214)
T PRK13942 4 NEIEKVIKNLIRRGYIKKKKVIDALLSVPRHKFVPEYLEE---YAYVDTPLEIGY-GQTISAIHMVA-----------IM 68 (214)
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHCCCHHHHH---CCCCCCCCCCCC-CCEECHHHHHH-----------HH
T ss_conf 3799999999972999999999999839987869955765---010589867899-97887499999-----------99
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 998388876214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 71 WEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 71 ~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
++.+.....-+|+|+|.|+|.+++=+-+-.. ..-+.+.||..+.|.+.-+++|..+
T Consensus 69 l~~L~l~~~~~VLeIGtGsGY~tAlla~lvg-------~~g~V~siE~~~~l~~~A~~~l~~~ 124 (214)
T PRK13942 69 CELLDLDEGQKVLEIGTGSGYHAAVVAEIVG-------KSGKVTTIERIPELAEKAKKNLKKL 124 (214)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHC-------CCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 9972799999799967995299999999747-------6785799971799999999999863
No 25
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=95.58 E-value=0.22 Score=29.48 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=49.3
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf 88888888645767117999999999999999838887621410078646898887999974185643012102363697
Q gi|254780410|r 41 NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362)
Q Consensus 41 ~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362)
-++|. |-++.+|.+. ..+.+.+.....-.|+|+|.|+|.+++=+-+-.. ..-+.+-+|.++
T Consensus 48 lpi~~-~~tis~P~~~-----------a~ml~~L~l~~g~~VLeIGtGsGY~tAlLa~l~~-------~~g~V~~iE~~~ 108 (205)
T pfam01135 48 LSIGY-GQTISAPHMH-----------AMMLELLELKPGMRVLEIGSGSGYLTACFARMVG-------EVGRVVSIEHIP 108 (205)
T ss_pred CCCCC-CCEECHHHHH-----------HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEEECCH
T ss_conf 14799-9888638999-----------9999970789999899966996599999999838-------787699983589
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 89999986411102
Q gi|254780410|r 121 RLTLIQKKQLASYG 134 (362)
Q Consensus 121 ~l~~~Q~~~l~~~~ 134 (362)
.|.+.-++++...+
T Consensus 109 ~l~~~A~~~l~~~~ 122 (205)
T pfam01135 109 ELVEIARRNLEKLG 122 (205)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999848
No 26
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=95.57 E-value=0.051 Score=33.89 Aligned_cols=74 Identities=24% Similarity=0.431 Sum_probs=46.0
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC---CHHCCCCHHHCCC-CC
Q ss_conf 8887621410078646898887999974185643012102363697899999864111023---1011043444456-95
Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD---KINWYTSLADVPL-GF 150 (362)
Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~---~v~w~~~l~~~~~-~~ 150 (362)
..+..-.|+++|+|+|.++.-+.+. .|. .+++.+|.|+...+.-++++..... ++.|-+-++.++. ..
T Consensus 28 ~~~~~g~vLDlGcG~G~i~~~la~~----~p~----~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~~~~~f 99 (170)
T pfam05175 28 PKPLGGKVLDLGCGYGVLGAALAKR----SPD----LEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVEPGKF 99 (170)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHH----CCC----CEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCE
T ss_conf 9778994999776482989999997----898----67985154499999999999980998489997446665778866
Q ss_pred EEEEEE
Q ss_conf 699981
Q gi|254780410|r 151 TFLVAN 156 (362)
Q Consensus 151 ~iiiaN 156 (362)
.+|+||
T Consensus 100 D~IvsN 105 (170)
T pfam05175 100 DLIISN 105 (170)
T ss_pred EEEEEC
T ss_conf 089989
No 27
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=95.56 E-value=0.047 Score=34.09 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=41.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCC-EEEEECCHHHHHHHHHHHH
Q ss_conf 999998388876214100786468988879999741856430121-0236369789999986411
Q gi|254780410|r 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLS-IYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 68 ~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~-~~ivE~s~~l~~~Q~~~l~ 131 (362)
..+.+....-++-.|+|+|||-|.|...+|+. ..+ ++-||+-+.|.+.-+++..
T Consensus 19 ~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~----------~~~~v~aiEiD~~l~~~L~~~~~ 73 (277)
T TIGR00755 19 QKIVEAANVLENDVVLEIGPGLGALTEPLLKR----------AKKLVTAIEIDPRLAEILRKLLS 73 (277)
T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH----------CCCEEEEEEECHHHHHHHHHHCC
T ss_conf 99999743789977999738820789999982----------59848999726789999875215
No 28
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.14 Score=30.86 Aligned_cols=84 Identities=14% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CC
Q ss_conf 99999999983888762141007864689888799997418564301210236369789999986411102310110-43
Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TS 142 (362)
Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~ 142 (362)
|.+++..-...|.-..-.|+++|+|+|.|+.-.. .+.....+.||+-+...+.-+++..+...+|.|+ .+
T Consensus 31 Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~---------~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d 101 (198)
T COG2263 31 AAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAA---------LLGASRVLAVDIDPEALEIARANAEELLGDVEFVVAD 101 (198)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH---------HCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999987388478888882788478899998---------6297179999369899999998888608846999821
Q ss_pred HHHCCCCCEEEEEE
Q ss_conf 44445695699981
Q gi|254780410|r 143 LADVPLGFTFLVAN 156 (362)
Q Consensus 143 l~~~~~~~~iiiaN 156 (362)
..++......+|-|
T Consensus 102 v~~~~~~~dtvimN 115 (198)
T COG2263 102 VSDFRGKFDTVIMN 115 (198)
T ss_pred HHHCCCCCCEEEEC
T ss_conf 01147766669978
No 29
>PHA02056 putative methyltransferase
Probab=95.39 E-value=0.041 Score=34.51 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=69.0
Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf 98888888864576711799999999999999983888762141007864689888799997418564301210236369
Q gi|254780410|r 40 CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362)
Q Consensus 40 ~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362)
..-+|..|-|+|+-.+-.-|+- + .+. .-.+|+++||=|+|..-++.- ..| .+++.||.+
T Consensus 39 e~~~~a~GAFFTP~~lA~DF~I-------D----a~~--tG~iiDLCAGIG~LSy~~~~r---~kp-----~~ivCVErN 97 (279)
T PHA02056 39 GDGLGGSGAFFTPEGLAWDFTI-------D----AHC--TGKVLDLCAGIGRLSFCMLHR---CKP-----EKIVCVELN 97 (279)
T ss_pred CCCCCCCCCEECHHHHHHHEEE-------E----CCC--CCEEEEECCCCCHHHHHHHHC---CCC-----CCEEEEEEC
T ss_conf 4444565534351564302255-------0----257--853888214612357999850---688-----635899408
Q ss_pred HHHHHHHHHHHHHCCCCHHCCC-CHHHCCCC--CEEEEEECCCCCCCEEE
Q ss_conf 7899999864111023101104-34444569--56999812288752358
Q gi|254780410|r 120 ERLTLIQKKQLASYGDKINWYT-SLADVPLG--FTFLVANEFFDSLPIKQ 166 (362)
Q Consensus 120 ~~l~~~Q~~~l~~~~~~v~w~~-~l~~~~~~--~~iiiaNE~lDAlPv~~ 166 (362)
|.+.+.-++.|++. .|+. +.=+.+.. +.+.|+|-=|-++-..+
T Consensus 98 ~~y~~vGkkilPeA----tWI~~Dv~~~~~~~~FD~aIsNPPFG~i~~~~ 143 (279)
T PHA02056 98 PEFARIGKRLLPEA----EWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred HHHHHHHHHCCCCC----EEEECCEECCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 57988643207640----27732313035666200453389976433333
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.36 E-value=0.082 Score=32.45 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=44.4
Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC
Q ss_conf 999983888762141007864689888799997418564301210236369789999986411102--310110
Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY 140 (362)
Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~ 140 (362)
.+.+.++....-+|+++|.|+|.++.-+.+.. .| ..+++.++.|+.+.+.-++++.... .+|.|+
T Consensus 42 ~~v~~l~~~~g~~vLDvgcGTG~~~~~l~~~~---~~----~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~ 108 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAV---GE----TGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFV 108 (239)
T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC---CC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99986278999989884577638799999972---99----767999919889999999999973898885079
No 31
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.21 E-value=0.098 Score=31.91 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=8.0
Q ss_pred CCEEEEEEEECCC
Q ss_conf 6326999980788
Q gi|254780410|r 342 GELFKILVVSHEK 354 (362)
Q Consensus 342 Ge~FKVl~~sk~~ 354 (362)
...|||.-.++.+
T Consensus 326 ~~kFkVy~A~~~r 338 (342)
T PRK09489 326 TGRFKVYRAIMTR 338 (342)
T ss_pred CCCEEEEEEECCC
T ss_conf 8997999985787
No 32
>KOG0822 consensus
Probab=95.17 E-value=0.058 Score=33.48 Aligned_cols=101 Identities=14% Similarity=0.272 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHH-HHHHHHHHCCCC
Q ss_conf 9999999999999998388876214100786468988879999741856430121023636978999-998641110231
Q gi|254780410|r 58 IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTL-IQKKQLASYGDK 136 (362)
Q Consensus 58 ~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~-~Q~~~l~~~~~~ 136 (362)
.++++|-..+.+.-..........|+=+|||+|-|..-+|+.....+ ..++.++||++|...- .|..+....+.+
T Consensus 347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~----RkVklyavEKNPNAivtL~~~n~~~W~~~ 422 (649)
T KOG0822 347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD----RKVKLYAVEKNPNAIVTLQNRNFECWDNR 422 (649)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCEEEEEEECCCCHHHHHHHHCHHHHCCE
T ss_conf 99999999997547501147328999963887607889999998724----71579999338544042454243654681
Q ss_pred HHCCC-CHHHCC---CCCEEEEEECCCCCCC
Q ss_conf 01104-344445---6956999812288752
Q gi|254780410|r 137 INWYT-SLADVP---LGFTFLVANEFFDSLP 163 (362)
Q Consensus 137 v~w~~-~l~~~~---~~~~iiiaNE~lDAlP 163 (362)
|+.++ ++-+.+ ....|++| |+|-.|-
T Consensus 423 Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFG 452 (649)
T KOG0822 423 VTIISSDMRKWNAPREQADIIVS-ELLGSFG 452 (649)
T ss_pred EEEEECCCCCCCCCHHHCCCHHH-HHHCCCC
T ss_conf 69993431246884442120399-7642246
No 33
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.09 E-value=0.08 Score=32.51 Aligned_cols=83 Identities=13% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC-CCH
Q ss_conf 99999983888762141007864689888799997418564301210236369789999986411102--310110-434
Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY-TSL 143 (362)
Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~-~~l 143 (362)
+.+.+.+.+..+...|+++|.|.|.|+..+.+. -.+++-+++|+.+.+.-+++.++.+ ++|.|. .++
T Consensus 52 ~l~wl~~~~dl~G~rVLDaGCGtG~la~~LA~~----------Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDl 121 (230)
T PRK07580 52 VLSWLPADGDLTGLSILDAGCGTGSLSIPLARR----------GAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDL 121 (230)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999731059978998988187867879999977----------9989998389999999997558627876753896676
Q ss_pred HHCCCCCEEEEEECCC
Q ss_conf 4445695699981228
Q gi|254780410|r 144 ADVPLGFTFLVANEFF 159 (362)
Q Consensus 144 ~~~~~~~~iiiaNE~l 159 (362)
+...-.+..|+|-++|
T Consensus 122 e~~~G~FD~Vv~mdvL 137 (230)
T PRK07580 122 ESLLGSFDTVVCLDVL 137 (230)
T ss_pred CCCCCCCCCHHHCCCE
T ss_conf 5457986602333715
No 34
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=94.95 E-value=0.14 Score=30.88 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCHHCCC-CHHHCCCC
Q ss_conf 983888762141007864689888799997418564301210236369789999986411102-3101104-34444569
Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-DKINWYT-SLADVPLG 149 (362)
Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-~~v~w~~-~l~~~~~~ 149 (362)
+.++....-.|+++|.|+|.++..+.+... ...+++.++.|+.+.+.-++++...+ .+|.|.. +-.++|
T Consensus 41 ~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~-------~~~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lp-- 111 (233)
T pfam01209 41 KCMGVKRGNKFLDVAGGTGDWTFGLSDSAG-------SSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELP-- 111 (233)
T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC--
T ss_conf 861899999899825405889999999849-------99749999699999999999998569998369982166688--
Q ss_pred CEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 56999812288752358999156646899899607953522576434322346331656841127934789999999976
Q gi|254780410|r 150 FTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRL 229 (362)
Q Consensus 150 ~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l 229 (362)
+.++-||+.-+ .+.+..-+....-++++...|
T Consensus 112 ----f~d~sfD~v~~--------------------------------------------~fglrn~~d~~~al~E~~RVL 143 (233)
T pfam01209 112 ----FEDDSFDIVTI--------------------------------------------SFGLRNFPDYLKVLKEAFRVL 143 (233)
T ss_pred ----CCCCCCCHHHH--------------------------------------------HHHHHCCCCHHHHHHHHHHHC
T ss_conf ----66656573142--------------------------------------------101212588899999999872
Q ss_pred HHCCEEEEEECCCCCCCCCCCEEEE----ECCCCC-------C---CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC
Q ss_conf 2057059996243368588880776----405767-------6---7000100034531268899999999689836332
Q gi|254780410|r 230 ACDGGTAIVIDYGYLQSRVGDTLQA----VKGHTY-------V---SPLVNPGQADLSSHVDFQRLSSIAILYKLYINGL 295 (362)
Q Consensus 230 ~~~~G~~L~iDYGy~~~r~~gTLr~----y~~H~~-------~---dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~ 295 (362)
+ .+|.+++.|.+..+.+ .++. |-++-. . +.+.+. ..=|..+.+-..+.+..+++|++.+.+
T Consensus 144 K-PGG~l~ilefs~P~~~---~~~~~~~~Y~~~ilP~ig~~~~~~~~aY~YL-~~Si~~fp~~~~~~~~l~~~GF~~v~~ 218 (233)
T pfam01209 144 K-PGGRVVCLEFSKPENP---LLSQAYELYFKYVMPFMGKMFAKSYKSYQYL-QESIRDFPDQKTLASMFEKAGFKSVGY 218 (233)
T ss_pred C-CCCEEEEEECCCCCCH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHCCCCEEEE
T ss_conf 7-8978999978888777---9999999999535999779984998998519-999998799999999999879977789
Q ss_pred EE
Q ss_conf 33
Q gi|254780410|r 296 TT 297 (362)
Q Consensus 296 ~s 297 (362)
.+
T Consensus 219 ~~ 220 (233)
T pfam01209 219 ES 220 (233)
T ss_pred EE
T ss_conf 98
No 35
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=94.87 E-value=0.067 Score=33.08 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=33.3
Q ss_pred EEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 100786468988879999741856430121023636978999998641110
Q gi|254780410|r 83 VELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 83 vE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+|+|+|+|.++..+.+.. | ..+++-+|+|+.+.+.-+++++..
T Consensus 1 LDvGcG~G~~~~~l~~~~----~----~~~v~giD~s~~~l~~a~~~~~~~ 43 (98)
T pfam08242 1 LDIGCGTGTLLRALLEAL----P----GLEYTGVDISPAALEAAAERLAAL 43 (98)
T ss_pred CCCCCCCCHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 988633799999999878----9----988999859889999999999871
No 36
>KOG0820 consensus
Probab=94.85 E-value=0.13 Score=31.04 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=41.5
Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 999983888762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
++.........=.|+|+|||+|-|..-+|+. .-+.+.+|.-|.+...-.++.+...
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~----------~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEA----------GKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHCCCCCCCCEEEEECCCCCHHHHHHHHH----------CCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 9986047899877999579877899999972----------0848999408078999999866998
No 37
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.76 E-value=0.18 Score=30.08 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=48.3
Q ss_pred CCCC-CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEE
Q ss_conf 4689-888888886457671179999999999999998388876214100786468988879999741856430121023
Q gi|254780410|r 37 YSTC-NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYM 115 (362)
Q Consensus 37 Y~~~-~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~i 115 (362)
|.-. -++| .|-++.+|.+. | .+.+.+.....-+|+|+|+|+|.+++=+-+ +. -+.+.
T Consensus 48 Y~D~~ipi~-~g~~is~P~~~-------A----~ml~~L~l~~~~~VLeIGtGsGY~tAlLa~-l~---------~~V~s 105 (213)
T PRK00312 48 YENRALPIG-CGQTISQPYMV-------A----RMTELLELKPGDRVLEIGTGSGYQAAVLAH-LV---------ERVFS 105 (213)
T ss_pred HCCCCCCCC-CCCEECHHHHH-------H----HHHHHHCCCCCCEEEEECCCCCHHHHHHHH-HC---------CCEEE
T ss_conf 337997688-99897679999-------9----999984368997599965986099999998-62---------92899
Q ss_pred EECCHHHHHHHHHHHHHC
Q ss_conf 636978999998641110
Q gi|254780410|r 116 VETSERLTLIQKKQLASY 133 (362)
Q Consensus 116 vE~s~~l~~~Q~~~l~~~ 133 (362)
||..+.|.+.-+++|.+.
T Consensus 106 iE~~~~l~~~a~~~l~~~ 123 (213)
T PRK00312 106 VERIKTLQWQAKRRLKQL 123 (213)
T ss_pred EECCHHHHHHHHHHHHHC
T ss_conf 942899999999999984
No 38
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.64 E-value=0.15 Score=30.56 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHCCCCCCCCCCC-CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 0499999987108987864689-888888886457671179999999999999998388876214100786468988879
Q gi|254780410|r 19 MTVDQYFALCVADPEFGYYSTC-NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDIL 97 (362)
Q Consensus 19 i~f~~fM~~aLy~p~~GYY~~~-~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL 97 (362)
++=.+|+...+-+ =-|.-. -++|. |-++.+|++.- .+++.+.....-+|+|+|+|+|..++=+-
T Consensus 27 VpRe~Fvp~~~~~---~AY~D~~lpi~~-~~tis~P~~~a-----------~ml~~L~~~~~~~VLeIGtGsGY~tAlla 91 (205)
T PRK13944 27 VPREEFVMPEYRM---MAYEDRPLPLFA-GATISAPHMVA-----------MMCELIEPRPGMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCHHHCCCHHHHC---CCCCCCCEECCC-CCEECHHHHHH-----------HHHHHHCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 9987869946871---873699751489-98997799999-----------99997068999989997898519999999
Q ss_pred HHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 999741856430121023636978999998641110
Q gi|254780410|r 98 RVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 98 ~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+-.. ..-+.+-||..+.|.+.-++++...
T Consensus 92 ~l~~-------~~g~V~siE~~~~L~~~A~~~l~~l 120 (205)
T PRK13944 92 EAIE-------RRGKVYTVEIVKELAIYAAQNIERL 120 (205)
T ss_pred HHHC-------CCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 9837-------4771799953699999999999985
No 39
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.55 E-value=0.23 Score=29.37 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH--CCCCH
Q ss_conf 9999999999999838887621410078646898887999974185643012102363697899999864111--02310
Q gi|254780410|r 60 GEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS--YGDKI 137 (362)
Q Consensus 60 g~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~--~~~~v 137 (362)
|-+||.|.- .+..-.|+|+|+|+|.+..-+.. ..+ ..++..||+.+.+.+.-++.++- +..+|
T Consensus 33 aiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~----r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 33 AILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQ----RTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERI 97 (248)
T ss_pred HHHHHHHCC-------CCCCCEEEEECCCCCHHHHHHHC----CCC----CCCEEEEEECHHHHHHHHHHHHHCCCHHHE
T ss_conf 999976526-------56687698836894689999745----587----780799981799999999988618613401
Q ss_pred HCC-CCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCH
Q ss_conf 110-4344445695699981228875235899915664689989960795352257643432234633165684112793
Q gi|254780410|r 138 NWY-TSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSP 216 (362)
Q Consensus 138 ~w~-~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~ 216 (362)
..+ .++. ++..+++...| -. |.. |. -.+...+. ........-.+.|+..
T Consensus 98 ~v~~~Di~------------~~~~~~~~~~f--------D~-Ii~--NP-Pyf~~~~~------~~~~~~~~~Ar~e~~~ 147 (248)
T COG4123 98 QVIEADIK------------EFLKALVFASF--------DL-IIC--NP-PYFKQGSR------LNENPLRAIARHEITL 147 (248)
T ss_pred EEEHHHHH------------HHHHCCCCCCC--------CE-EEE--CC-CCCCCCCC------CCCCHHHHHHHHHHCC
T ss_conf 67643088------------76542365654--------78-995--98-98787533------4867466556632228
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 47899999999762057059996
Q gi|254780410|r 217 CRDREMQSISDRLACDGGTAIVI 239 (362)
Q Consensus 217 ~~~~~~~~i~~~l~~~~G~~L~i 239 (362)
....|++..+..|+.+ |.+-+|
T Consensus 148 ~le~~i~~a~~~lk~~-G~l~~V 169 (248)
T COG4123 148 DLEDLIRAAAKLLKPG-GRLAFV 169 (248)
T ss_pred CHHHHHHHHHHHCCCC-CEEEEE
T ss_conf 8999999999974679-789999
No 40
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.15 E-value=0.33 Score=28.29 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=42.8
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 9983888762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 71 WEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 71 ~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
+.+++....-.+.++|+|+|..+....+. .|. .+.+.||+++...+.-+++...++
T Consensus 33 l~kL~l~~~~~vwDIGaGtGsVsiEaa~~----~~~----g~V~AIE~~~~a~~li~~N~~rfg 88 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAGTGTIPVEAALL----CPK----GRVIAIERDEEVANLIRRNCDRFG 88 (196)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 99708999999999478877999999987----899----889999768889999999899729
No 41
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.98 E-value=0.37 Score=27.95 Aligned_cols=62 Identities=23% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH
Q ss_conf 99999999998388876214100786468988879999741856430121023636978999998641
Q gi|254780410|r 63 LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362)
Q Consensus 63 ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362)
+.....++-..+ |....|||+|+|+++=.+-+|+.+.+.. ....|+.|++|...-+.-.+.|
T Consensus 63 L~~~~~eIa~~i--~~~~~lVElGsG~~~Kt~~LL~al~~~~----~~~~Y~piDIS~~~L~~s~~~l 124 (319)
T TIGR03439 63 LKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQK----KSVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred HHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHCC----CCCEEEEEECCHHHHHHHHHHH
T ss_conf 999899999855--8997699746887245899999998549----9742886517699999999874
No 42
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.41 Score=27.67 Aligned_cols=106 Identities=22% Similarity=0.361 Sum_probs=62.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCC---------CCCC-CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999818980499999987108987---------8646-89888888886457671179999999999999998388
Q gi|254780410|r 7 RKIVNLIKKNGQMTVDQYFALCVADPEF---------GYYS-TCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGF 76 (362)
Q Consensus 7 ~~i~~~I~~~G~i~f~~fM~~aLy~p~~---------GYY~-~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~ 76 (362)
+.+.+.|+..|-++ .+-++--+--|-. --|. +.-++| .|-.+.+|++- |+ +.+.+..
T Consensus 4 ~~l~~~lr~~~i~~-~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~-~gqtis~P~~v-------A~----m~~~L~~ 70 (209)
T COG2518 4 RMLVERLRTEGITD-ERVLKAFLAVPRELFVPAAYKHLAYEDRALPIG-CGQTISAPHMV-------AR----MLQLLEL 70 (209)
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHCCHHHCCCCHHHCCCCCCCCCCCC-CCCEECCCHHH-------HH----HHHHHCC
T ss_conf 78999998718775-999999985898750690454256468764478-99350574799-------99----9997489
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 87621410078646898887999974185643012102363697899999864111023
Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD 135 (362)
Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~ 135 (362)
...-.|+|+|.|+|..++=+-+-. -+.+-+|..+.|.+.-+++|...+-
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~----------~~V~siEr~~~L~~~A~~~L~~lg~ 119 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV----------GRVVSIERIEELAEQARRNLETLGY 119 (209)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH----------CEEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 999868887778309999999974----------8499999719999999999997698
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.96 E-value=0.24 Score=29.30 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 999999999999838887621410078646898887999974185643012102363697899999864
Q gi|254780410|r 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362)
Q Consensus 61 ~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362)
+.+|..+++.... ...-.|+|+|.|+|.+...+.+. ..+++.++.|+.+.+.-+++
T Consensus 28 ~~~a~~Ll~~l~~---~~~~~vLDlGcGtG~~t~~l~~~----------~~~v~~~Dls~~Ml~~a~~~ 83 (251)
T PRK10258 28 RQSADALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRER----------GSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHCCC---CCCCCEEEEEEHHHHHHHHHHHC----------CCEEEEEECCHHHHHHHHHH
T ss_conf 9999999973665---78993999831002789999974----------99699995989999999874
No 44
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=93.96 E-value=0.31 Score=28.51 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH
Q ss_conf 88888645767117999999999999999838887621410078646898887999974185643012102363697899
Q gi|254780410|r 44 GAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362)
Q Consensus 44 G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362)
++.|.|+|-.+|..+..+++.. . ..-.|++--+|+|.|.....+++.....+. ..++++=.|.++...
T Consensus 23 ~~~GeffTPr~Vv~lmv~ll~p----------~-~~~~V~DPacGtGgfLi~a~~~i~~~~~~~-~~~~i~G~E~~~~~~ 90 (312)
T pfam02384 23 KSGGEFYTPREVSKLIVELLEP----------K-PGESIYDPACGSGGFLIQADKFVKSHDGDT-NDISIYGQELNPTTY 90 (312)
T ss_pred CCCCEECCCHHHHHHHHHHHCC----------C-CCCEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCEEECCCCCHHHH
T ss_conf 7586358878999999998289----------9-999882168773378999999999843785-565563688998999
Q ss_pred HHHHHHHHHCC-----CCHHCCCCHHHC--C--CCCEEEEEEC
Q ss_conf 99986411102-----310110434444--5--6956999812
Q gi|254780410|r 124 LIQKKQLASYG-----DKINWYTSLADV--P--LGFTFLVANE 157 (362)
Q Consensus 124 ~~Q~~~l~~~~-----~~v~w~~~l~~~--~--~~~~iiiaNE 157 (362)
..-+-++--++ ..+.|-++|..- + ....+|++|=
T Consensus 91 ~la~mNm~lhgi~~~~~~i~~gdsl~~~~~~~~~kfD~IlsNP 133 (312)
T pfam02384 91 RLARMNMILHGIEYNDFGIRHGDTLLSPKFEEDKKFDVVVANP 133 (312)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 9999999984798874552147765576766545511898378
No 45
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.95 E-value=0.18 Score=30.07 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=30.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 141007864689888799997418564301210236369789999986411
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
.|+|+|+|+|.++..+.+. + ..+++.+|.|+.+.+.-+++..
T Consensus 1 rVLDiGcG~G~~~~~l~~~-----~----~~~v~~iD~s~~~~~~a~~~~~ 42 (107)
T cd02440 1 RVLDLGCGTGALALALASG-----P----GARVTGVDISPVALELARKAAA 42 (107)
T ss_pred CEEEEECCCCHHHHHHHHC-----C----CCEEEEEECCHHHHHHHHHHHH
T ss_conf 9999988879999999956-----8----9889999898889999999875
No 46
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=0.21 Score=29.63 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCCCEEECCCCCH----HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf 88888645767117----99999999999999983888762141007864689888799997418564301210236369
Q gi|254780410|r 44 GAVGDFVTAPEISQ----IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362)
Q Consensus 44 G~~GDF~Tsp~is~----~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362)
|.+..|.|.|-|=+ -+|- +.+++. +..+...+|+++|.|.|-|..-+.+. .|+ .++.++|.|
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS---~lLl~~---l~~~~~~~vlDlGCG~Gvlg~~la~~----~p~----~~vtmvDvn 191 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGS---RLLLET---LPPDLGGKVLDLGCGYGVLGLVLAKK----SPQ----AKLTLVDVN 191 (300)
T ss_pred CCCEEEEECCCCCCCCCCCHHH---HHHHHH---CCCCCCCCEEEECCCCCHHHHHHHHH----CCC----CEEEEEECC
T ss_conf 6752699489877598868388---999973---77556996887078842999999986----898----728998266
Q ss_pred HHHHHHHHHHHHHCCCC--HHCCCCHH-HCCCCCEEEEEEC
Q ss_conf 78999998641110231--01104344-4456956999812
Q gi|254780410|r 120 ERLTLIQKKQLASYGDK--INWYTSLA-DVPLGFTFLVANE 157 (362)
Q Consensus 120 ~~l~~~Q~~~l~~~~~~--v~w~~~l~-~~~~~~~iiiaNE 157 (362)
..-.+.-++++.....+ ..|.+++- .++.....||+|=
T Consensus 192 ~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNP 232 (300)
T COG2813 192 ARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNP 232 (300)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC
T ss_conf 99999988769973987637998124466544006898488
No 47
>KOG2904 consensus
Probab=93.66 E-value=0.37 Score=27.95 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=49.7
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH
Q ss_conf 88864576711799999999999999983888762141007864689888799997418564301210236369789999
Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362)
Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362)
.|=||--||.- .+-.++++...+...-..-.|+|+|-|+|..+..+|..+. ...+..||.|+...+.
T Consensus 121 pgVlIPRpETE-----E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~--------~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904 121 PGVLIPRPETE-----EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP--------QCTVTAIDVSKAAIKL 187 (328)
T ss_pred CCEEECCCCHH-----HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCC--------CCEEEEEECCHHHHHH
T ss_conf 87432684679-----9999999997556532666688705783188999983478--------7348998532889999
Q ss_pred HHHHHH
Q ss_conf 986411
Q gi|254780410|r 126 QKKQLA 131 (362)
Q Consensus 126 Q~~~l~ 131 (362)
-+++-+
T Consensus 188 a~eN~q 193 (328)
T KOG2904 188 AKENAQ 193 (328)
T ss_pred HHHHHH
T ss_conf 998899
No 48
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.63 E-value=0.46 Score=27.36 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=36.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 8762141007864689888799997418564301210236369789999986411
Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
|....|||+|+|+++=.+-+|+.+.+ ...|+.|++|...-+.-.+.|+
T Consensus 62 ~~~~~lIElGsG~~~Kt~~LL~al~~-------~~~Y~plDIS~~~L~~s~~~l~ 109 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ-------PARYVPIDISADALKESAAALA 109 (301)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHH
T ss_conf 76764773178862378999998621-------5638877568999999999999
No 49
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.63 E-value=0.37 Score=28.01 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCCCEEECCC--CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH
Q ss_conf 8888645767--11799999999999999983888762141007864689888799997418564301210236369789
Q gi|254780410|r 45 AVGDFVTAPE--ISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362)
Q Consensus 45 ~~GDF~Tsp~--is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362)
.+.+|++... +++-=-.++ ....+..+..-.+.|+|+|+|..+....+... ...+.+.||+++..
T Consensus 11 pD~~F~r~~~~PmTK~EVRa~------~l~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~-------~~~~V~aIE~~~e~ 77 (198)
T PRK00377 11 PDEEFIRAEGIPMTKEEIRAL------ALSKLRLFKGGKLVDVGCGTGSVSVEAALIVG-------EGGKVYAIDKDELA 77 (198)
T ss_pred CHHHHCCCCCCCCCHHHHHHH------HHHHHCCCCCCEEEEECCCEEHHHHHHHHHCC-------CCCEEEEEECCHHH
T ss_conf 979966799998667999999------99970999989999917703299999999669-------78759999678889
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999986411102
Q gi|254780410|r 123 TLIQKKQLASYG 134 (362)
Q Consensus 123 ~~~Q~~~l~~~~ 134 (362)
.+.-+++...++
T Consensus 78 ~~~~~~N~~kfg 89 (198)
T PRK00377 78 VELTKKNAEKFG 89 (198)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999809
No 50
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=93.52 E-value=0.25 Score=29.13 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCC-EEEEECCH---HHHHHHHHHHH
Q ss_conf 179999999999999998388876214100786468988879999741856430121-02363697---89999986411
Q gi|254780410|r 56 SQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLS-IYMVETSE---RLTLIQKKQLA 131 (362)
Q Consensus 56 s~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~-~~ivE~s~---~l~~~Q~~~l~ 131 (362)
+-++||++-.++.++.++.+..+.=.++++|+|-|.+..+..-+ ..++ -+=+|+.+ .+.+.|.+.++
T Consensus 20 ~~vYGEllp~fis~ii~~~~l~~~dvF~DLGSGVGnvv~QaAl~---------tgc~~s~GiEi~~~~a~~A~~~~~~~~ 90 (205)
T pfam08123 20 NEVYGELLPEFLSDVLDKCNLGPQDVFVDLGSGVGNCVLQAALE---------FGCKLSFGCEIMDNASNLAELQDEEFK 90 (205)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---------HCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 75511358899999999839897688998588832999999987---------096538888865668999999999999
No 51
>pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
Probab=93.27 E-value=0.24 Score=29.24 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=32.6
Q ss_pred HHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf 999998388-87621410078646898887999974185643012102363697
Q gi|254780410|r 68 ICAWEQHGF-PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362)
Q Consensus 68 ~~~~~~~~~-p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362)
+...++.+. +++-.+||+|||+|.|+.-|-..+.... .....|++||...
T Consensus 7 ig~le~~~ll~~~~~~vEfGAGrG~LS~~v~~~l~~~~---~~~~~~~LIDR~s 57 (256)
T pfam05206 7 IGNLEELGLLSPSTAYVEFGAGKGELSRYLNQCLLEDQ---LSNPGFVLIDRAS 57 (256)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC---CCCCCEEEEECCC
T ss_conf 99999739989998899978964699999999852345---6676389998888
No 52
>KOG2361 consensus
Probab=93.22 E-value=0.75 Score=25.88 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 999999999818980499999987108-----987864689888888886457671179999999999999998388-87
Q gi|254780410|r 5 LIRKIVNLIKKNGQMTVDQYFALCVAD-----PEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGF-PS 78 (362)
Q Consensus 5 L~~~i~~~I~~~G~i~f~~fM~~aLy~-----p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~-p~ 78 (362)
+.+--..++++.+..+..++=...+-+ =+..|-..+++|=++ -+|+...|.++.. +.
T Consensus 7 ~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkd-----------------R~wL~~Efpel~~~~~ 69 (264)
T KOG2361 7 EEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKD-----------------RNWLLREFPELLPVDE 69 (264)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCH-----------------HHHHHHHHHHHHCCCC
T ss_conf 89999998764243135256666663364666456665324545311-----------------6778775677507555
Q ss_pred --CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEE
Q ss_conf --621410078646898887999974185643012102363697899999864111023101104344445695699981
Q gi|254780410|r 79 --CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVAN 156 (362)
Q Consensus 79 --~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaN 156 (362)
...|+|+|-|-|-....||+. +|+ ..+.++..+-||..++.-++.-.....++
T Consensus 70 ~~~~~ilEvGCGvGNtvfPll~~----~~n--~~l~v~acDfsp~Ai~~vk~~~~~~e~~~------------------- 124 (264)
T KOG2361 70 KSAETILEVGCGVGNTVFPLLKT----SPN--NRLKVYACDFSPRAIELVKKSSGYDESRV------------------- 124 (264)
T ss_pred CCHHHHEEECCCCCCCCCHHHHC----CCC--CCEEEEECCCCHHHHHHHHHCCCCCHHHH-------------------
T ss_conf 57345112224777512244424----899--87389974898689999873633264550-------------------
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHH-HHHHHHHHHHHHCCEE
Q ss_conf 228875235899915664689989960795352257643432234633165684112793478-9999999976205705
Q gi|254780410|r 157 EFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRD-REMQSISDRLACDGGT 235 (362)
Q Consensus 157 E~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~-~~~~~i~~~l~~~~G~ 235 (362)
+-|+. +++... +.....+. ....... .=...+++|... .-++.+...|+ -+|.
T Consensus 125 --------~afv~----------Dlt~~~-~~~~~~~~-----svD~it~-IFvLSAi~pek~~~a~~nl~~llK-PGG~ 178 (264)
T KOG2361 125 --------EAFVW----------DLTSPS-LKEPPEEG-----SVDIITL-IFVLSAIHPEKMQSVIKNLRTLLK-PGGS 178 (264)
T ss_pred --------CCCCE----------ECCCHH-CCCCCCCC-----CCCEEEE-EEEEECCCHHHHHHHHHHHHHHHC-CCCE
T ss_conf --------12000----------165601-03788867-----6334789-998751484778999999999748-8867
Q ss_pred EEEECCCCCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 9996243368588880-776405767670001000345312688999999996898363
Q gi|254780410|r 236 AIVIDYGYLQSRVGDT-LQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYIN 293 (362)
Q Consensus 236 ~L~iDYGy~~~r~~gT-Lr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~ 293 (362)
+|+=|||-.. -| ||--+.+...+-+.==|.=-..+.-+=..|.+.+.++|+...
T Consensus 179 llfrDYg~~D----laqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~ 233 (264)
T KOG2361 179 LLFRDYGRYD----LAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV 233 (264)
T ss_pred EEEEECCCCH----HHHHHCCCCCEEECCEEECCCCCEEEECCHHHHHHHHHHCCCCHH
T ss_conf 9984145434----788751577432014588169966522368899999875153210
No 53
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.16 E-value=0.4 Score=27.77 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=42.9
Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 9998388876214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 70 AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 70 ~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+....|....-.|+|.|.|+|.|+.-+++++... -+.+.+|.-+...+.-+++++++
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~-------G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPE-------GHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred HHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCC-------CEEEEEEECHHHHHHHHHHHHHH
T ss_conf 9987099988789981568059999999964888-------45999995278999999999984
No 54
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=92.94 E-value=0.61 Score=26.47 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 88762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
+|.+-+|+-+|.|.|.+++.++++. ..-+...||+.+..++..++.|+...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~--------~ve~i~~VEID~~Vi~~ar~~l~~~~ 124 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHL--------PVERITMVEIDPAVIELARKYLPEPS 124 (282)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCC--------CCCEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 7997769998897669999998368--------84337999708899999998666754
No 55
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=92.46 E-value=0.63 Score=26.38 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=41.3
Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 9998388876214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 70 AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 70 ~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+...++.-..-.|+|.|.|+|.|...+++++.. .-+.+-+|..+...+.-++.+..+
T Consensus 94 I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp-------~G~v~t~E~~e~r~~~A~~n~~~~ 150 (309)
T pfam08704 94 IIMMLELKPGSVVCESGTGSGSLSHAIARTVAP-------TGHLYTFEFHEQRADKAREEFREH 150 (309)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC-------CCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 999809899999998367842999999997488-------865999844789999999999874
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.30 E-value=0.65 Score=26.31 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 99838887621410078646898887999974185643012102363697899999864111023
Q gi|254780410|r 71 WEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD 135 (362)
Q Consensus 71 ~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~ 135 (362)
+.++..+..-.+.++|+|+|..+....+. .|+ .+.+.||+++...+.-+++...++.
T Consensus 23 LskL~l~~~~vvwDIGaGsGsvsiEaa~~----~p~----~~V~AvE~~~~~~~~i~~N~~~fg~ 79 (186)
T PRK08287 23 LSKLELHRAKHLIDVGAGTGSVSIEAALQ----FPS----LQVTAIERNPAALRLIKENRQRFGC 79 (186)
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 99719999999999578877899999997----899----8899993798999999998997299
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=92.19 E-value=0.51 Score=27.03 Aligned_cols=56 Identities=16% Similarity=0.369 Sum_probs=42.6
Q ss_pred HHHCCCC-CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 9983888-76214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 71 WEQHGFP-SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 71 ~~~~~~p-~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+..+... ...+++++|||+|+......+.. | ..++.+.||+++.-...-+++...|
T Consensus 12 L~~L~l~~~~~v~wDIGaGtGS~~iE~~~~~----p---~~g~v~aiEr~~~~~~~~~~N~~~~ 68 (135)
T TIGR02469 12 LAKLRLRPGDSVLWDIGAGTGSVTIEAARLV----P---NSGRVYAIERNPEALRLIERNLRRF 68 (135)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHC----C---CCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 9871789999468896057483899999735----9---8607999853768987999999982
No 58
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=91.93 E-value=0.58 Score=26.63 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHHHHHHHCCCCCCCCCCC---CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 99999987108987864689---888888886457671179999999999999998388876214100786468988879
Q gi|254780410|r 21 VDQYFALCVADPEFGYYSTC---NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDIL 97 (362)
Q Consensus 21 f~~fM~~aLy~p~~GYY~~~---~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL 97 (362)
+..+...+|.- +|+.- .-+|++.=|+=|.+- |.+++..-. ..|. +.-..-.++++|||+|.-...+.
T Consensus 44 ~hsl~~~~L~~----fms~TdiNG~LgRGsMfV~S~~Q---~~~LL~~~~-~~~~--~~~~~~~LLDlGAGdG~VT~~la 113 (265)
T pfam05219 44 WHALARSILSF----FMSQTDINGFLGRGSMFIFSEEQ---FRKLLVIGG-FQPA--SGQEPVTLLDLGAGDGEITLRMA 113 (265)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECHHH---HHHHHHCCC-CCCC--CCCCCCEEEEECCCCCHHHHHHH
T ss_conf 99999999998----96242166564577658844999---999972437-6788--88776647883589978999999
Q ss_pred HHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
Q ss_conf 99974185643012102363697899999864111023101104344445695699981228875235899915664689
Q gi|254780410|r 98 RVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRER 177 (362)
Q Consensus 98 ~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~ 177 (362)
..+ -+.+..|.|+.+|.+-+++ +..++-..+ |.+.
T Consensus 114 ~~F----------~~V~aTE~S~~Mr~rL~~r-------------------gf~vl~~~~----------------~~~~ 148 (265)
T pfam05219 114 PTF----------EEVYATELSWTMRDRLKKK-------------------NYNVLTEIE----------------WQET 148 (265)
T ss_pred HHH----------CEEEEEECCHHHHHHHHHC-------------------CCEEEEEHH----------------CCCC
T ss_conf 752----------3588872789999999975-------------------986875012----------------0356
Q ss_pred EEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECC
Q ss_conf 98996079535225764343223463316568411279347899999999762057059996243368588880776405
Q gi|254780410|r 178 MIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKG 257 (362)
Q Consensus 178 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~ 257 (362)
.+.+ + .+.+-|.- ++ |-.-...++++.+.++.++-.+|.+=+=|.+---.++- ++
T Consensus 149 ~~~f--------D---------vIscLNvL--DR---c~~P~~LL~~i~~~L~P~G~lilAvVlPf~pyVE~~~~---~~ 203 (265)
T pfam05219 149 DVNL--------D---------LILCLNLL--DR---CFDPFKLLEDIHLALAPNGRVIVALVLPYMHYVETNTG---SH 203 (265)
T ss_pred CCCE--------E---------EEHHHHHH--HC---CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCCC---CC
T ss_conf 8744--------5---------54222445--31---38869999999972499967999998256201775898---77
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEE
Q ss_conf 7676700010003453126889999999968983633233
Q gi|254780410|r 258 HTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTT 297 (362)
Q Consensus 258 H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~s 297 (362)
++..+.+.--| -|.----+.+.++++.+|+++..++.
T Consensus 204 ~~p~e~l~~~g---~~~E~~v~~l~~vl~p~GF~v~~~tR 240 (265)
T pfam05219 204 LPPRPLLENNG---ASFEEEVARFMEVFENAGFRVEAWTR 240 (265)
T ss_pred CCCHHHCCCCC---CCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99521137899---80999999999987607957888732
No 59
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=91.87 E-value=0.3 Score=28.65 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=28.4
Q ss_pred EEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 1007864689888799997418564301210236369789999986411
Q gi|254780410|r 83 VELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 83 vE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
+|+|+|+|.++.-+.+. + ..+++-+|+|+.+.+.-+++..
T Consensus 1 LDiGcG~G~~~~~l~~~-----~----~~~v~giD~s~~~i~~a~~~~~ 40 (95)
T pfam08241 1 LDVGCGTGLLTEALARL-----P----GAQVTGVDLSPEMLALARKRAQ 40 (95)
T ss_pred CCCCCCCCHHHHHHHHC-----C----CCEEEEEECCHHHHHHHHHHCC
T ss_conf 96462499999999845-----7----9999999497899877663102
No 60
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=91.60 E-value=0.65 Score=26.29 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=44.4
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 88645767117999999999999999838887621410078646898887999974185643012102363697899999
Q gi|254780410|r 47 GDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 (362)
Q Consensus 47 GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q 126 (362)
||=||.-..+.-.-..-...+..++.....+. .++|+||+-|.= |..++.+.|+ ...+.||+|+...+.-
T Consensus 14 G~~Yi~RN~~~~~~~sn~~~f~~~l~~~~~ik--SilE~GcNIGlN----L~ALk~L~P~----~~l~gIEIN~~A~~~l 83 (204)
T TIGR03587 14 GKEYIDRNSRQSLVAAKLAMFARALNRLPKIA--SILELGANIGMN----LAALKRLLPF----KHIYGVEINEYAVEKA 83 (204)
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCHH----HHHHHHHCCC----CEEEEEECCHHHHHHH
T ss_conf 66877727734778889999999983578888--268966884776----9999874874----4049995399999999
Q ss_pred HHHHHH
Q ss_conf 864111
Q gi|254780410|r 127 KKQLAS 132 (362)
Q Consensus 127 ~~~l~~ 132 (362)
++.++.
T Consensus 84 k~~~~~ 89 (204)
T TIGR03587 84 KAYLPN 89 (204)
T ss_pred HHHCCC
T ss_conf 865897
No 61
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=90.92 E-value=0.63 Score=26.41 Aligned_cols=86 Identities=15% Similarity=0.272 Sum_probs=62.8
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCHHHHHHHHHHHHHCC--HHHH--HCCCEEEEEC
Q ss_conf 888864576711799999999999999983888--762141007864689888799997418--5643--0121023636
Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQHGFP--SCVRLVELGPGRGIMMLDILRVICKLK--PDFF--SVLSIYMVET 118 (362)
Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p--~~~~ivE~GaG~G~La~diL~~l~~~~--p~~~--~~l~~~ivE~ 118 (362)
+.|-|||.|+|+... -..++......... +...|+|---|+|.|..-.|+.+..+. ++.. -.++.++.++
T Consensus 2 ~~G~yfT~~~~~~~m----~~~l~~~~~~~~~~nI~~~~~~DP~~G~G~Li~~~L~~~~~i~~~~~~i~~~~~~~~~~Di 77 (603)
T TIGR02987 2 AYGTYFTPLDLAKEM----VKELVKEIDKNDKSNIEKLKIIDPCCGDGRLIALLLKKFEEINLFKEQIEKVELNIYLADI 77 (603)
T ss_pred CCCEEECCHHHHHHH----HHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECC
T ss_conf 841252768999999----9999875176530004154533575276499999999866430340232331110002314
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9789999986411102
Q gi|254780410|r 119 SERLTLIQKKQLASYG 134 (362)
Q Consensus 119 s~~l~~~Q~~~l~~~~ 134 (362)
++.+-.+-.+.+..++
T Consensus 78 ~~~~L~~~~~~~~~~~ 93 (603)
T TIGR02987 78 DKTLLERASKLLSELA 93 (603)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 4479999999887876
No 62
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.89 E-value=1.2 Score=24.54 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-CHHCC
Q ss_conf 9838887621410078646898887999974185643012102363697899999864111023-10110
Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD-KINWY 140 (362)
Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~-~v~w~ 140 (362)
..++....-.++++|+|+|.+|.-+.+... ..+.+.++.|+.+-+.-++++.+.+. .|.|+
T Consensus 45 ~~~~~~~g~~vLDva~GTGd~a~~~~k~~g--------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv 106 (238)
T COG2226 45 SLLGIKPGDKVLDVACGTGDMALLLAKSVG--------TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106 (238)
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHCC--------CCEEEEEECCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 860789998799966873199999999658--------84499997999999999987432476632799
No 63
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=89.97 E-value=0.76 Score=25.85 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=49.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCCC-CHHHC--CCCCEEEEE
Q ss_conf 141007864689888799997418564301210236369789999986411102--3101104-34444--569569998
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWYT-SLADV--PLGFTFLVA 155 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~~-~l~~~--~~~~~iiia 155 (362)
+|+++|.|.|..+..+.+. .| ..+++-++.|+...+.-+++....+ .+|.+.. +.... |....+++|
T Consensus 2 rVLDiGCG~G~~~~~LA~~----~p----~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d~FD~V~s 73 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER----HP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred EEEEEECCCCHHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCEEEH
T ss_conf 0899836688889999997----79----988999979999999999999972998651478521103999998356768
Q ss_pred ECCCCCCC
Q ss_conf 12288752
Q gi|254780410|r 156 NEFFDSLP 163 (362)
Q Consensus 156 NE~lDAlP 163 (362)
.|.+=-+|
T Consensus 74 ~evl~Hi~ 81 (224)
T smart00828 74 FEVIHHIK 81 (224)
T ss_pred HHHHHCCC
T ss_conf 53576539
No 64
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=88.90 E-value=2 Score=23.02 Aligned_cols=97 Identities=14% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 80499999987108987864689888888886457671179999999999999998388876214100786468988879
Q gi|254780410|r 18 QMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDIL 97 (362)
Q Consensus 18 ~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL 97 (362)
.|+=.+|...++-+- -|-....+||. |-.|-||.+.-.- ++.++.. ....-.++|+|.|+|..+.=+-
T Consensus 34 ~v~Re~F~P~~fk~~--AY~~~al~ig~-~qtiS~p~mvA~m--------~~yL~nh-L~~~~~vLeiG~GSGY~aavlA 101 (228)
T TIGR00080 34 SVPREEFVPEAFKEA--AYEDAALEIGY-GQTISAPHMVAKM--------TEYLENH-LKPGAKVLEIGTGSGYQAAVLA 101 (228)
T ss_pred CCCCCCCCCHHHHHC--CCCCCCCCCCC-CCEECCHHHHHHH--------HHHHHHH-CCCCCEEEEECCCCHHHHHHHH
T ss_conf 187623367166637--85255200256-7624407899999--------9988852-1403556650478558999999
Q ss_pred HHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 999741856430121023636978999998641110
Q gi|254780410|r 98 RVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 98 ~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
.-+.+. -..+-||.=+.|...-+++|+.|
T Consensus 102 ~~v~~~-------G~V~SiEri~~L~~~A~~~Lk~h 130 (228)
T TIGR00080 102 EIVGRD-------GLVVSIERIPELVEKARRRLKKH 130 (228)
T ss_pred HHHHCC-------CEEEEEEECHHHHHHHHHHHHHH
T ss_conf 987139-------71899853578899999876543
No 65
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=88.03 E-value=1.9 Score=23.15 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=37.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 62141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
.-.++++|+|+|+++.+.... .| ..+.+.+|.++...+.-+++...++
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~----~p----~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALA----GP----SGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred CCEEEEECCCCCHHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 998999578866899999973----98----8559999258889999999999849
No 66
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=87.57 E-value=2.4 Score=22.47 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 11799999999999999983888762141007864689888799997418564301210236369789999986411
Q gi|254780410|r 55 ISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 55 is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
+-..|+.+.+. +.++=+..-.=.+-.++++|+|.|+-+--..+.+. + ..+|..||.|+.+.+.-+..+.
T Consensus 12 ~pa~Yaa~~~v-l~Ei~~r~p~f~P~slLD~GsGpGt~~wAa~~~w~----~---l~~~~~vd~s~~m~~l~~~L~~ 80 (275)
T pfam09243 12 LPATYAAVRAS-LDELAERVPQFAPLSHLDVGAGPGTALWAASELWP----G---LEPATVIDASEAALAIGEELAR 80 (275)
T ss_pred CCHHHHHHHHH-HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHC----C---CEEEEEECCCHHHHHHHHHHHH
T ss_conf 45779999999-99999867999987577727757999999998842----4---7689997489999999999985
No 67
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=87.27 E-value=2 Score=22.98 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-CHHCCCCHHHCCCCCEE
Q ss_conf 38887621410078646898887999974185643012102363697899999864111023-10110434444569569
Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD-KINWYTSLADVPLGFTF 152 (362)
Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~-~v~w~~~l~~~~~~~~i 152 (362)
.+.+..-.+||+|-|+|.+...+. +.+|+ ..|+=||+...-...-.+++.+.+. .+..+ .
T Consensus 44 f~~~~~pi~lEIGfG~G~~l~~~A----~~nP~----~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~-----------~ 104 (227)
T COG0220 44 FGNNNAPIVLEIGFGMGEFLVEMA----KKNPE----KNFLGIEIRVPGVAKALKKIKELGLKNLRLL-----------C 104 (227)
T ss_pred HCCCCCCEEEEECCCCCHHHHHHH----HHCCC----CCEEEEEEEHHHHHHHHHHHHHCCCCCEEEE-----------E
T ss_conf 388889669996888987899999----87898----7789999734899999999998299846998-----------0
Q ss_pred EEEECCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99812288752358999156646899899
Q gi|254780410|r 153 LVANEFFDSLPIKQFVMTEHGIRERMIDI 181 (362)
Q Consensus 153 iiaNE~lDAlPv~~~~~~~~~w~E~~V~~ 181 (362)
.=|.|+||-|+-+ +.+..++|.+
T Consensus 105 ~DA~~~l~~~~~~------~sl~~I~i~F 127 (227)
T COG0220 105 GDAVEVLDYLIPD------GSLDKIYINF 127 (227)
T ss_pred CCHHHHHHHCCCC------CCEEEEEEEC
T ss_conf 7799999735898------8565799979
No 68
>KOG3924 consensus
Probab=86.89 E-value=2.4 Score=22.40 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 76711799999999999999983888762141007864689888799997418564301210236369789999986411
Q gi|254780410|r 52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
++--++.+||+.-.++.++.+++.....=..+.+|.|=|.++.-...+... . .+.-+-+..........|++.++
T Consensus 166 k~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~-k----~svG~eim~~pS~~a~~~~~~~k 240 (419)
T KOG3924 166 KSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC-K----KSVGFEIMDKPSQCAELNKEEFK 240 (419)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC-C----CCCCEEEECCCHHHHHHHHHHHH
T ss_conf 355663055533999999999963698872347776510236788875340-0----10340541584788999999999
No 69
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=86.64 E-value=1.3 Score=24.19 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=32.6
Q ss_pred EECCCCCHHH-HHHHHHHHHHHHHHCCC-CCCCEEEEECCCCHHHHH
Q ss_conf 4576711799-99999999999998388-876214100786468988
Q gi|254780410|r 50 VTAPEISQIF-GEMLAIFLICAWEQHGF-PSCVRLVELGPGRGIMML 94 (362)
Q Consensus 50 ~Tsp~is~~F-g~~ia~~~~~~~~~~~~-p~~~~ivE~GaG~G~La~ 94 (362)
.|-|.=+ +| --.||.+++.+|++... +.+..+|++|.|+|-|..
T Consensus 29 ~TdP~K~-VfEDlaIAayLi~LW~~~~~~~~~~~FvDlGCGNGlLV~ 74 (112)
T pfam07757 29 CTDPQKF-VFEDLAIAAYLIMLWRQTRSAESLQSFVDIGCGNGLLVY 74 (112)
T ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH
T ss_conf 3796402-689999999999999986142578853771477228999
No 70
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase; InterPro: IPR010081 This small family includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 0dentical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase)..
Probab=86.64 E-value=1.8 Score=23.27 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 999999999998388876214100786468988879999741856430121023636978999998
Q gi|254780410|r 62 MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQK 127 (362)
Q Consensus 62 ~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~ 127 (362)
++|.-..+.+++++++.|-||+ +=||=|.||-.++=|+....++ +....++||+...=.-.|-
T Consensus 191 TlA~EA~eQlre~gS~~PtHv~-lQAGVGs~AG~V~GYfv~~~~e--n~p~~ivVEp~~AdClYqS 253 (378)
T TIGR01747 191 TLAVEAVEQLREFGSELPTHVL-LQAGVGSLAGAVLGYFVDAYSE--NIPIIIVVEPDKADCLYQS 253 (378)
T ss_pred HHHHHHHHHHHHHCCCCCCEEE-EECCHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHC
T ss_conf 8999999999982789873355-5422366767899888751489--9874899777423820110
No 71
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=86.46 E-value=2.7 Score=22.06 Aligned_cols=163 Identities=15% Similarity=0.221 Sum_probs=86.9
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHC-CC
Q ss_conf 9999999983888762141007864689888799997418564301210236369789999986411102--31011-04
Q gi|254780410|r 65 IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINW-YT 141 (362)
Q Consensus 65 ~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w-~~ 141 (362)
+-+..+.++++....-+|+|+|.|=|.|+.-+.+. + .+++.-|-.|+...+.-+++.++.+ ++|.. ..
T Consensus 49 ~Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~--------~-g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~ 119 (273)
T pfam02353 49 AKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAER--------Y-DVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQ 119 (273)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH--------C-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 99999998658899998999788808999999984--------7-95189997978999999999987087432120006
Q ss_pred CHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCC--HHHH
Q ss_conf 34444569569998122887523589991566468998996079535225764343223463316568411279--3478
Q gi|254780410|r 142 SLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENS--PCRD 219 (362)
Q Consensus 142 ~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~--~~~~ 219 (362)
+..+++. =+.+.|.+. -+|.- ....
T Consensus 120 Dyrd~~~-------------------------~fD~IvSie----------------------------m~Ehvg~~~~~ 146 (273)
T pfam02353 120 DYRDFDE-------------------------PFDRIVSVG----------------------------MFEHVGHENYD 146 (273)
T ss_pred CHHHCCC-------------------------CCCEEEEEH----------------------------HHHHCCHHHHH
T ss_conf 2654766-------------------------666677651----------------------------68762877799
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEE
Q ss_conf 999999997620570599962433685888807764057-676700010003453126889999999968983633233
Q gi|254780410|r 220 REMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGH-TYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTT 297 (362)
Q Consensus 220 ~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H-~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~s 297 (362)
.+++.+...|+. +|.+++=.-+....+... .++.. ....-+..||-. +.+ .+.+..++++.|+++....+
T Consensus 147 ~~f~~i~~~Lkp-gG~~~iq~i~~~~~~~~~---~~~~~~~fi~kyIFPGG~-lPs---~~~~~~~~~~~~l~v~~~~~ 217 (273)
T pfam02353 147 TFFKKLYNLLPP-GGLMLLHTITGLHPDETS---ERGLPLKFIDKYIFPGGE-LPS---ISMIVESSSEAGFTVEDVES 217 (273)
T ss_pred HHHHHHHHHCCC-CCEEEEEEEECCCCCCHH---HCCCCCCHHHHHCCCCCC-CCC---HHHHHHHHHHCCCEEEEEEE
T ss_conf 999999986588-973999999425732101---027742007776079987-899---99999999868948867676
No 72
>KOG2811 consensus
Probab=86.34 E-value=2.7 Score=22.02 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH
Q ss_conf 888762141007864689888799997418564301210236369789999
Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362)
Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362)
..|+ -.++|+|||+|.|++=+-.++..-+ ..-++++|++...-+.
T Consensus 180 ~~~~-~~~vEFGAGrg~Ls~~vs~~l~~~~-----~~l~vlvdR~s~R~K~ 224 (420)
T KOG2811 180 TAPS-SCFVEFGAGRGELSRWVSDCLQIQN-----VYLFVLVDRKSSRLKF 224 (420)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHCCCC-----EEEEEEECCCCHHHHH
T ss_conf 7876-2589966870289999999853465-----7999852012024431
No 73
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.09 E-value=0.83 Score=25.58 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCCCCCCCC--CCCCCCCCEEEC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999987108987864689--888888886457--67117999999999999999
Q gi|254780410|r 21 VDQYFALCVADPEFGYYSTC--NPFGAVGDFVTA--PEISQIFGEMLAIFLICAWE 72 (362)
Q Consensus 21 f~~fM~~aLy~p~~GYY~~~--~~~G~~GDF~Ts--p~is~~Fg~~ia~~~~~~~~ 72 (362)
--+||..-||+|+.|||++. +..|.+|-|||= -|+..+-|+ .+..+++.+.
T Consensus 301 i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~-d~~~~~~~f~ 355 (667)
T COG1331 301 ILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGE-DAELACKYFD 355 (667)
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHCC-CHHHHHHHCC
T ss_conf 999999982288874110222467666787442479999988420-2899998705
No 74
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=84.84 E-value=3 Score=21.72 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 7621410078646898887999974185643012102363697899999864111
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362)
....|+++|.|.|.|+..+.+. --+..=|+.|+...+.-++.-..
T Consensus 48 ~G~~ILDVGCGgG~lse~LAr~----------Ga~VtGID~S~~~I~~Ar~ha~~ 92 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL----------GATVTGIDASEENIEVARLHALE 92 (233)
T ss_pred CCCEEEEECCCCCHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHHHH
T ss_conf 8998999755897112899967----------99799987998999999998564
No 75
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=83.93 E-value=2.4 Score=22.45 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=34.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHH
Q ss_conf 876214100786468988879999741856430121023636978999
Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTL 124 (362)
Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~ 124 (362)
...|.|.|+|=|.|-=..-.+..+.+..+. ...++|+.||+.|--++
T Consensus 56 ~~~f~i~E~GFGtGLNfl~t~~~~~~~~~~-~~~L~~~s~E~~Pl~~~ 102 (660)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFRQPPAR-LKRLHFISFEKFPLTRA 102 (660)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCHH
T ss_conf 997799996875579999999999714788-97589999979989999
No 76
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=83.74 E-value=3.3 Score=21.44 Aligned_cols=138 Identities=14% Similarity=0.229 Sum_probs=64.4
Q ss_pred HHHC-CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCC
Q ss_conf 9983-888762141007864689888799997418564301210236369789999986411102310110434444569
Q gi|254780410|r 71 WEQH-GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLG 149 (362)
Q Consensus 71 ~~~~-~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~ 149 (362)
|+++ +.+.++ ++|+|.|+|..+.+.. ..+|+ ..|+-+|+...-...-.+++.++ ..+ .
T Consensus 13 w~~~F~~~~pi-~lEIG~G~G~~l~~~A----~~~p~----~n~iGiEi~~~~v~~~~~k~~~~----------~~l--~ 71 (199)
T pfam02390 13 WQALFGNEQPL-FLEIGCGMGDFLVAMA----KKNPD----KLFIGIEIRVPGVDKALKKIIAL----------RGL--Q 71 (199)
T ss_pred HHHHCCCCCCE-EEEECCCCCHHHHHHH----HHCCC----CCEEEEEECHHHHHHHHHHHHHH----------CCC--C
T ss_conf 89983999944-9997368889999999----97899----87899995059999999999984----------577--7
Q ss_pred CEEEEE---ECCCCC-CCEEEEEEECCCCEEEEEEEEECCCEEECCCCCC----CCCCCCC--CCCCCCCCEECCCHHHH
Q ss_conf 569998---122887-5235899915664689989960795352257643----4322346--33165684112793478
Q gi|254780410|r 150 FTFLVA---NEFFDS-LPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHE----IKSNFLT--CSDYFLGAIFENSPCRD 219 (362)
Q Consensus 150 ~~iiia---NE~lDA-lPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~g~~~E~~~~~~ 219 (362)
+..++. .++++. +| ++.+.++++-. .+- |...... +...+.. ..-+..|..+.+.++..
T Consensus 72 Ni~~~~~da~~~l~~~~~-------~~~l~~i~i~F-PDP---WpKkrH~KRRli~~~fl~~~~~~Lk~gG~l~~~TD~~ 140 (199)
T pfam02390 72 NLRILCGDAMKLLPNLFP-------DGSLQKIFINF-PDP---WPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLATDVE 140 (199)
T ss_pred CEEEECCCHHHHHHHHCC-------CCCEEEEEEEC-CCC---CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 378760479999997579-------88642799967-999---8764424400079999999999638898999982899
Q ss_pred HHHHHHHHHHHHCCEEEEEEC
Q ss_conf 999999997620570599962
Q gi|254780410|r 220 REMQSISDRLACDGGTAIVID 240 (362)
Q Consensus 220 ~~~~~i~~~l~~~~G~~L~iD 240 (362)
.+...+.+.+..+++.+-.+.
T Consensus 141 ~y~~~~~e~~~~~~~~~~~~~ 161 (199)
T pfam02390 141 EYFEWMLEHLSENHPLFERIH 161 (199)
T ss_pred HHHHHHHHHHHHCCHHHEECC
T ss_conf 999999999996561341135
No 77
>PRK00811 spermidine synthase; Provisional
Probab=82.44 E-value=2.9 Score=21.87 Aligned_cols=79 Identities=29% Similarity=0.436 Sum_probs=53.6
Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE
Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363
Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362)
Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362)
.+|+ +|..-+|--=--.+-|+++.--. .-+|.+-+|+=+|+|+|..++.+|++ | ..-++.+||
T Consensus 43 ~~G~~l~LDg~~q~se~DE~~YhE~lvH~pl-----~~h~~pk~VLIiGGGDGg~~rE~lkh-----~---~v~~v~~Ve 109 (283)
T PRK00811 43 EFGRLLALDGCVMTTERDEFIYHEMMTHVPL-----LAHPNPKKVLIIGGGDGGTLREVLKH-----P---SVEKITMVE 109 (283)
T ss_pred CCCEEEEECCEEEECCCCHHHHHHHHHHHHH-----HHCCCCCEEEEECCCCHHHHHHHHCC-----C---CCCEEEEEE
T ss_conf 7423999999854403857777677540477-----73899774899568747999998427-----8---856799994
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 6978999998641110
Q gi|254780410|r 118 TSERLTLIQKKQLASY 133 (362)
Q Consensus 118 ~s~~l~~~Q~~~l~~~ 133 (362)
+-+...+.-++.+++.
T Consensus 110 iD~~Vi~~~~~~lp~~ 125 (283)
T PRK00811 110 IDERVVEMSRKYLPEI 125 (283)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 6899999999983886
No 78
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=80.57 E-value=4.6 Score=20.46 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 11799999999999999983888762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 55 ISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 55 is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
++|.=|.+++ ++-++..|. .|+|+|-+.|.=+.-+.+.+. + .-+++.+|.++...+.-++.+...+
T Consensus 28 i~~~~g~~L~-----~l~~~~~ak--~iLEiGT~~GySal~lA~~l~----~---~g~i~tiE~~~~~~~~A~~~~~~ag 93 (204)
T pfam01596 28 ISPEEGQFLS-----MLVKLVGAK--RTLEIGVFTGYSLLATALALP----E---DGKITACDIDREAYEIGLPFIQKAG 93 (204)
T ss_pred CCHHHHHHHH-----HHHHHHCCC--EEEEEECCCCHHHHHHHHHCC----C---CCEEEEEEECHHHHHHHHHHHHHCC
T ss_conf 4999999999-----999975987--899983432599999998489----9---9689999804899999999999779
No 79
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=80.29 E-value=4.7 Score=20.40 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111
Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362)
Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362)
..+.+. ||..++.+ .+....-.+++...|+|+++........ ....+-+|.++.+.+.-++++..
T Consensus 10 a~L~~~----lAa~l~~l---a~~~~g~~vlDP~CGSGtilIEAa~~~~--------~~~~~G~Did~~~v~~A~~N~~~ 74 (171)
T pfam01170 10 APLKAT----LARAMVNL---AGWKPGDPLLDPFCGSGTILIEAALMGA--------NVALYGSDIDRRMVRGARINAEA 74 (171)
T ss_pred CCCCHH----HHHHHHHH---HCCCCCCEEEECCCCCCHHHHHHHHHHC--------CCCCEEEECCHHHHHHHHHHHHH
T ss_conf 898899----99999998---5899999788689987899999999613--------58953675879999999999998
Q ss_pred C
Q ss_conf 0
Q gi|254780410|r 133 Y 133 (362)
Q Consensus 133 ~ 133 (362)
.
T Consensus 75 ~ 75 (171)
T pfam01170 75 A 75 (171)
T ss_pred H
T ss_conf 2
No 80
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=80.08 E-value=4.8 Score=20.36 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=57.7
Q ss_pred CCCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEE
Q ss_conf 88888----88864576711799999999999999983888762141007864689888799997418564301210236
Q gi|254780410|r 41 NPFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMV 116 (362)
Q Consensus 41 ~~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~iv 116 (362)
..+|+ +|++-++-.=-..+-|+|+.-.. +-.|++-+|+=+|.|+|..++.+|++ | ..-++.+|
T Consensus 39 ~~~G~~L~LDg~~q~te~De~~YhE~lvH~~~-----~~~~~pk~VLIiGGGDG~~~rEvlk~-----~---~v~~v~~V 105 (240)
T pfam01564 39 KTFGKILVLDGRVQLTERDEFIYHEMIAHVPL-----CSHPNPKKVLIIGGGDGGALREVVKH-----P---SVEKITLV 105 (240)
T ss_pred CCCCCEEEECCEEEEECCCHHHHHHHHHCCHH-----HHCCCCCEEEEECCCCHHHHHHHHCC-----C---CCCEEEEE
T ss_conf 77576899999776505668888888745377-----65888553676458657999998567-----9---95389997
Q ss_pred ECCHHHHHHHHHHHHHC
Q ss_conf 36978999998641110
Q gi|254780410|r 117 ETSERLTLIQKKQLASY 133 (362)
Q Consensus 117 E~s~~l~~~Q~~~l~~~ 133 (362)
|+-+...+.-++.++..
T Consensus 106 EiD~~Vv~~~~~~lp~~ 122 (240)
T pfam01564 106 EIDEKVIEFSKKFLPSL 122 (240)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 57889999999987985
No 81
>PRK00536 speE spermidine synthase; Provisional
Probab=79.56 E-value=4 Score=20.94 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=53.1
Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE
Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363
Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362)
Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362)
.+|+ +|-..|.-. -=.+-|+|+. ....-+|.+-+++=+|+|+|-.++.+|++ | .+..+||
T Consensus 38 ~fGkvlvLDG~i~t~~~-ef~YhEMl~H-----vpl~~Hp~Pk~VLIIGGGDGG~~REvlKH-----~-----~~v~~VE 101 (262)
T PRK00536 38 DFGEIAMLNKQLLFKNF-LHIESELLAH-----MGGCTKKELKEVLIVDGFDLELAHQLFKY-----D-----THVDFVQ 101 (262)
T ss_pred CCCEEEEEECEEEEECH-HHHHHHHHHC-----HHHHCCCCCCEEEEECCCCHHHHHHHHCC-----C-----CEEEEEE
T ss_conf 63317998063898600-6788888753-----02321899787999868755999998728-----9-----7669999
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 6978999998641110
Q gi|254780410|r 118 TSERLTLIQKKQLASY 133 (362)
Q Consensus 118 ~s~~l~~~Q~~~l~~~ 133 (362)
+-+...+.-++-|+..
T Consensus 102 ID~~Vv~~sk~ylP~~ 117 (262)
T PRK00536 102 ADEKILDSFISFFPHF 117 (262)
T ss_pred ECHHHHHHHHHHCHHH
T ss_conf 6789999999978565
No 82
>KOG2901 consensus
Probab=79.29 E-value=0.025 Score=35.99 Aligned_cols=166 Identities=11% Similarity=-0.125 Sum_probs=90.3
Q ss_pred HHHHHHHHHH--CC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHC--------
Q ss_conf 9999999981--89-804999999871089878646898888888864576711799999999999999983--------
Q gi|254780410|r 6 IRKIVNLIKK--NG-QMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQH-------- 74 (362)
Q Consensus 6 ~~~i~~~I~~--~G-~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~-------- 74 (362)
++...+.+.. .| .++-+.||+.-++-+--+||.-..-.+..++|.|++++|+-|+..|..|...-|..+
T Consensus 52 aeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~ew~~~g~~~~~qLvelgpgrgtl~~dvl~~~~ 131 (415)
T KOG2901 52 AEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLT 131 (415)
T ss_pred HHHHHHHHHCCCCCEECCHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 88899987373123031287750145765780099999875310577751642896624578851655577888999999
Q ss_pred ---CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-------------CCHH
Q ss_conf ---888762141007864689888799997418564301210236369789999986411102-------------3101
Q gi|254780410|r 75 ---GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-------------DKIN 138 (362)
Q Consensus 75 ---~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-------------~~v~ 138 (362)
+..-..++||+-+- |-.+. ...+.++.++.|..+.-.-+.-.+.+. ....
T Consensus 132 kf~~~~vs~hLve~S~~--------ls~lq------~~~l~~~~~~~s~~~~~tt~sg~~~~w~~sl~dvp~g~s~iiah 197 (415)
T KOG2901 132 KFKDEDLSVHLVEVSPA--------LSKLQ------AQNLCCTDESLSEYKKGSTLSGTPIHWHRTLQDVPSGFTLIIAH 197 (415)
T ss_pred HHCCCEEEEEEEEECHH--------HHHHH------HCCEEEEECCHHHHHHCCCCCCCCHHCCCCHHHCCCCEEEEEHH
T ss_conf 85685002788882576--------78876------44616760317777624544567311036832357854897767
Q ss_pred CCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCC
Q ss_conf 1043444456956999812288752358999156646899899607953522576
Q gi|254780410|r 139 WYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGD 193 (362)
Q Consensus 139 w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~ 193 (362)
|+-+.-.++.. -.+++|=.||+.++.++..++ +| .....++.+....
T Consensus 198 ef~DalpVhkf-----qk~~~~w~eV~vd~~~d~~~r--fv-ls~s~tp~~~~~~ 244 (415)
T KOG2901 198 EFFDALPVHQF-----QKSTRGWCEVMVDVGEDSKFR--FV-LSPSPTPAALYLM 244 (415)
T ss_pred HHHHCCCCHHH-----CCCCCCCCEEEEECCCCCCEE--EE-CCCCCCHHHHCCC
T ss_conf 75432762210-----337877104677225764178--85-5888875664077
No 83
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=79.05 E-value=4.1 Score=20.87 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=53.2
Q ss_pred CC-CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH
Q ss_conf 88-88864576711799999999999999983888762141007864689888799997418564301210236369789
Q gi|254780410|r 44 GA-VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362)
Q Consensus 44 G~-~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362)
|+ .|+|||..+|+.+-.+++.. .|.. .|..--.|+|.|.....+++.+.. ..+.++-.|+++.-
T Consensus 162 ~k~~GEfyTP~~v~~liv~~l~~----------~~~~-~i~DpacGsgg~l~~a~~~~~~~~----~~~~~yGqE~~~~t 226 (489)
T COG0286 162 GKEAGEFYTPREVSELIVELLDP----------EPRN-SIYDPACGSGGMLLQAAKYLKRHQ----DEIFIYGQEINDTT 226 (489)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCC----------CCCC-CCCCCCCCCCHHHHHHHHHHHHHC----CCEEEEEEECCHHH
T ss_conf 75578605879999999997577----------6565-234733540379999999997515----55049989566889
Q ss_pred HHHHHHHHHHC
Q ss_conf 99998641110
Q gi|254780410|r 123 TLIQKKQLASY 133 (362)
Q Consensus 123 ~~~Q~~~l~~~ 133 (362)
...-+-.+--|
T Consensus 227 ~~l~~mN~~lh 237 (489)
T COG0286 227 YRLAKMNLILH 237 (489)
T ss_pred HHHHHHHHHHH
T ss_conf 99999611662
No 84
>PRK04457 spermidine synthase; Provisional
Probab=78.97 E-value=5.2 Score=20.13 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.5
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 8887621410078646898887999974185643012102363697899999864
Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362)
Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362)
..|.+-+|+-+|-|.|++++-+.+. .|+ .+...||++|...+.-++.
T Consensus 63 f~p~Pk~vl~iGLGgGsl~k~~~~~----~P~----~~i~~VEIdp~Vi~vAr~~ 109 (262)
T PRK04457 63 FNPRPQHILQIGLGGGSFAKFIDTY----LPD----TRQTAVEINPQVIAVARNH 109 (262)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHH
T ss_conf 5899786999925701999999983----986----7589998788999999986
No 85
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=78.85 E-value=5.2 Score=20.10 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=52.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC-CHHHCC---CCCEEE
Q ss_conf 7621410078646898887999974185643012102363697899999864111023101104-344445---695699
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT-SLADVP---LGFTFL 153 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~-~l~~~~---~~~~ii 153 (362)
+...|+++|.|-|-|+..+.+. . .+..-++.|+...+.-+..-.+.+..+.|.. +..++. ..+.+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~----G------a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL----G------ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCEEEEECCCCCHHHHHHHHC----C------CEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 7770887458832864999977----9------94697438767789998754424632252233299997248974489
Q ss_pred EEECCCCCCCEE
Q ss_conf 981228875235
Q gi|254780410|r 154 VANEFFDSLPIK 165 (362)
Q Consensus 154 iaNE~lDAlPv~ 165 (362)
+|+|++--.|--
T Consensus 129 ~cmEVlEHv~dp 140 (243)
T COG2227 129 TCMEVLEHVPDP 140 (243)
T ss_pred EEHHHHHCCCCH
T ss_conf 773587716999
No 86
>KOG2244 consensus
Probab=78.47 E-value=1.1 Score=24.78 Aligned_cols=42 Identities=36% Similarity=0.517 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCCCCCCCC---------CCCCCCCCEE--ECCCCCHHHHHH
Q ss_conf 99999987108987864689---------8888888864--576711799999
Q gi|254780410|r 21 VDQYFALCVADPEFGYYSTC---------NPFGAVGDFV--TAPEISQIFGEM 62 (362)
Q Consensus 21 f~~fM~~aLy~p~~GYY~~~---------~~~G~~GDF~--Tsp~is~~Fg~~ 62 (362)
.-+||.--|-||+.|+|+.. .+--++|-|| |+-||.++||+-
T Consensus 364 I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~ 416 (786)
T KOG2244 364 ILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGEN 416 (786)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCC
T ss_conf 99999986248788701023467775456555356605873499999873777
No 87
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=78.17 E-value=5.5 Score=19.97 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=32.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 14100786468988879999741856430121023636978999998641110
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+|+++|.|.|..+.-.-+ ...| .-+.+=|+.|+.+.+.-+++....
T Consensus 76 ~VLDLGcG~G~d~~~aA~---~VG~----~G~ViGVD~s~~ML~~Ar~~a~~~ 121 (258)
T PRK11873 76 TVLDLGSGAGFDCFLAAR---RVGP----TGKVIGVDMTPEMLAKARANARKA 121 (258)
T ss_pred EEEEECCCCCHHHHHHHH---HHCC----CCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 899947887775999999---8699----977999859999999999999975
No 88
>KOG3987 consensus
Probab=78.04 E-value=0.89 Score=25.37 Aligned_cols=66 Identities=29% Similarity=0.376 Sum_probs=41.7
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH
Q ss_conf 88888864576711799999999999999983888762141007864689888799997418564301210236369789
Q gi|254780410|r 43 FGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362)
Q Consensus 43 ~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362)
.|++.=|+-||+- |.+++++-- .-|.+ ++..++++|||+|....-+-..+ - +++.-|.|..+
T Consensus 85 lgrGsMFifSe~Q---F~klL~i~~-p~w~~----~~~~lLDlGAGdGeit~~m~p~f-------e---evyATElS~tM 146 (288)
T KOG3987 85 LGRGSMFIFSEEQ---FRKLLVIGG-PAWGQ----EPVTLLDLGAGDGEITLRMAPTF-------E---EVYATELSWTM 146 (288)
T ss_pred CCCCCEEEECHHH---HHHHHHCCC-CCCCC----CCEEEEECCCCCCCHHHHHCCHH-------H---HHHHHHHHHHH
T ss_conf 2667169856999---999983178-75589----87068861678861001214218-------9---99998766999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780410|r 123 TLIQ 126 (362)
Q Consensus 123 ~~~Q 126 (362)
|.+-
T Consensus 147 r~rL 150 (288)
T KOG3987 147 RDRL 150 (288)
T ss_pred HHHH
T ss_conf 9998
No 89
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=77.75 E-value=5.6 Score=19.89 Aligned_cols=112 Identities=14% Similarity=0.285 Sum_probs=67.2
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CC-HHC-CCC
Q ss_conf 99999983888762141007864689888799997418564301210236369789999986411102--31-011-043
Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DK-INW-YTS 142 (362)
Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~-v~w-~~~ 142 (362)
+..++.+-+.++-..|++.|.|.|.|...+.+. --....+++|+.|.+.-+++.+... ++ |+. +.+
T Consensus 43 ~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~----------GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~D 112 (224)
T TIGR02021 43 LLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKR----------GAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVND 112 (224)
T ss_pred HHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHC----------CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
T ss_conf 998546788987677775588931544988847----------9868662376899999986210021016700354530
Q ss_pred HHHCC-CCCEEEEEECCCCCCCEEEEEEECC---CCEEEEEEEEECCCEEECCCCCCC
Q ss_conf 44445-6956999812288752358999156---646899899607953522576434
Q gi|254780410|r 143 LADVP-LGFTFLVANEFFDSLPIKQFVMTEH---GIRERMIDIDQHDSLVFNIGDHEI 196 (362)
Q Consensus 143 l~~~~-~~~~iiiaNE~lDAlPv~~~~~~~~---~w~E~~V~~~~~~~~~~~~~~~~~ 196 (362)
+.... -....++| +|.+ +| +..+ ...+..-.. .+...++..+|...
T Consensus 113 l~s~~~G~fD~VV~---mDvl-IH---Yp~~d~~~~l~~Lasl-t~~~~~ftfAP~T~ 162 (224)
T TIGR02021 113 LESLELGKFDAVVA---MDVL-IH---YPAEDIAKALEHLASL-TKERVIFTFAPKTA 162 (224)
T ss_pred HHHHCCCCCCEEEE---EHHH-HH---CCHHHHHHHHHHHHHH-HCCCEEEEECCCCH
T ss_conf 44413898555675---2122-32---0222279999998874-35864898678767
No 90
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=77.67 E-value=3.6 Score=21.25 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=59.1
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHH
Q ss_conf 99999983888762141007864689888799997418564301210236369789999986411102310110-43444
Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLAD 145 (362)
Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~ 145 (362)
..++..+......-.++++|.|.|....-+.+-+ |+ -.+.=++.|+.+.+.-+++++.. +|. .++.+
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw----P~----A~i~GiDsS~~Mla~Aa~rlp~~----~f~~aDl~~ 86 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRW----PD----AVITGIDSSPAMLAKAAQRLPDA----TFEEADLRT 86 (257)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHC----CC----CEEEECCCCHHHHHHHHHHCCCC----CEECCCHHH
T ss_conf 8899864786664103455778877889999868----88----86760469999999999748997----321052754
Q ss_pred CC-C-CCEEEEEECCCCCCCEEE
Q ss_conf 45-6-956999812288752358
Q gi|254780410|r 146 VP-L-GFTFLVANEFFDSLPIKQ 166 (362)
Q Consensus 146 ~~-~-~~~iiiaNE~lDAlPv~~ 166 (362)
.. . ...+++||-+|-=+|-|-
T Consensus 87 w~p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 87 WKPEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 49987633033443664436408
No 91
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=77.14 E-value=4 Score=20.92 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=41.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC---CCHHHCCCC-CEEEEEE
Q ss_conf 141007864689888799997418564301210236369789999986411102310110---434444569-5699981
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY---TSLADVPLG-FTFLVAN 156 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~---~~l~~~~~~-~~iiiaN 156 (362)
.|+++|.|+|+|+..+ ++. ..++-+=||.++.-.....++ +..|..- +.+...+++ +.++++.
T Consensus 16 rVLDlGCG~G~ll~~L----~~~-----k~v~~~GvEid~~~v~~a~~k----g~~Vi~~D~d~~l~~f~d~sFD~VIls 82 (193)
T pfam07021 16 RVLDLGCGDGSLLYLL----QEE-----KQVDGRGIELDAAGVAECVAK----GLSVIQGDADKGLEHFPDKSFDYVILS 82 (193)
T ss_pred EEEEECCCCCHHHHHH----HHC-----CCCCEEEECCCHHHHHHHHHC----CCCEECCCHHHCHHHCCCCCCCEEEHH
T ss_conf 8998368898999999----876-----698769833899999999864----795450774459745776780378698
Q ss_pred CCCCCCCE
Q ss_conf 22887523
Q gi|254780410|r 157 EFFDSLPI 164 (362)
Q Consensus 157 E~lDAlPv 164 (362)
+.+-+++-
T Consensus 83 ~vLqhl~~ 90 (193)
T pfam07021 83 QTLQATRN 90 (193)
T ss_pred HHHHHHCC
T ss_conf 79987528
No 92
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=76.98 E-value=5.9 Score=19.75 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHH
Q ss_conf 99999999999998-38887621410078646898
Q gi|254780410|r 60 GEMLAIFLICAWEQ-HGFPSCVRLVELGPGRGIMM 93 (362)
Q Consensus 60 g~~ia~~~~~~~~~-~~~p~~~~ivE~GaG~G~La 93 (362)
+..+|+|+.+.-.. ........|+|+|||.|...
T Consensus 25 a~~La~yL~~~~~~~~~~~~~k~VLELGaG~GL~G 59 (171)
T pfam10294 25 AVVLSKYLEMKITSGGNNLSGKNVLELGSGCGLVG 59 (171)
T ss_pred HHHHHHHHHHHCCCCHHHCCCCEEEEECCCCCHHH
T ss_conf 99999999852213533406876787056657589
No 93
>PRK05785 hypothetical protein; Provisional
Probab=75.33 E-value=6.5 Score=19.46 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 8762141007864689888799997418564301210236369789999986
Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
+.+-.|+++|.|+|.++..+ .+ ..+.+.++.|+.+-+..+.
T Consensus 50 ~~~~~vLDva~GTGd~a~~l----~~-------~~~v~~~D~s~~ML~~a~~ 90 (225)
T PRK05785 50 KSPLKVLDAGAGPGNMAYHL----RK-------IRYVVALDYTEEMLRLNLV 90 (225)
T ss_pred CCCCEEEEECCCCHHHHHHH----HC-------CCEEEEEECCHHHHHHHHH
T ss_conf 88882899568843999996----34-------7869999889999998764
No 94
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=73.74 E-value=7.1 Score=19.19 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=28.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 410078646898887999974185643012102363697899999864
Q gi|254780410|r 82 LVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362)
Q Consensus 82 ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362)
|+|+|+|+|-.|-..- +.. .-.+.-+++||...+..|++
T Consensus 25 VlEiG~GtGlvair~~----~Kg-----~k~i~~tDinP~Avk~~~~N 63 (183)
T TIGR00537 25 VLEIGAGTGLVAIRLK----EKG-----KKKILTTDINPFAVKLLREN 63 (183)
T ss_pred EEEEECCHHHHHHHHH----CCC-----CCEEEEEECCHHHHHHHHHC
T ss_conf 8997168048999985----158-----82078863687999987731
No 95
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=73.44 E-value=2.4 Score=22.42 Aligned_cols=46 Identities=33% Similarity=0.509 Sum_probs=29.8
Q ss_pred CC-CCCC-CCEEECCCCCH-HHHHHHHHHHHHHHHHCCCCCCCEEEEEC-------CCCHHHHHHHHH
Q ss_conf 88-8888-88645767117-99999999999999983888762141007-------864689888799
Q gi|254780410|r 41 NP-FGAV-GDFVTAPEISQ-IFGEMLAIFLICAWEQHGFPSCVRLVELG-------PGRGIMMLDILR 98 (362)
Q Consensus 41 ~~-~G~~-GDF~Tsp~is~-~Fg~~ia~~~~~~~~~~~~p~~~~ivE~G-------aG~G~La~diL~ 98 (362)
.| -|++ |+|+||=.|.- +=.|+..+ =++.|.|.. +|+|.|...||=
T Consensus 324 SPlAG~EVGk~VTSR~i~dRL~rEL~~N------------vALrVe~t~~~D~f~VsGRGELhLsILi 379 (609)
T TIGR01394 324 SPLAGKEVGKFVTSRQIRDRLERELETN------------VALRVEDTESADKFEVSGRGELHLSILI 379 (609)
T ss_pred CCCCCCCCCCEECCCCHHHHHHHHHHCC------------CEEEEECCCCCCCEEEECCEEEHHHHHH
T ss_conf 8765532573032441578999986317------------1456403898873487201113023454
No 96
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=72.46 E-value=2.4 Score=22.49 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=51.1
Q ss_pred CCCCCC-CCCEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCH----HHHHCC
Q ss_conf 988888-888645767117---999999999999999838887621410078646898887999974185----643012
Q gi|254780410|r 40 CNPFGA-VGDFVTAPEISQ---IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKP----DFFSVL 111 (362)
Q Consensus 40 ~~~~G~-~GDF~Tsp~is~---~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p----~~~~~l 111 (362)
..++.+ -+|+|++++=+- ...-+.+..+.+-|..... ..+.|+|+|-|.|.=..-.+..+....+ .....+
T Consensus 17 ~~p~sr~fdd~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~-~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l 95 (252)
T COG4121 17 HTPVSRLFDDVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQ-EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDL 95 (252)
T ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CCEEEHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98027761530126654302528899860686222544566-42321223223124489997641453001234553432
Q ss_pred CEEEEECCHHHH
Q ss_conf 102363697899
Q gi|254780410|r 112 SIYMVETSERLT 123 (362)
Q Consensus 112 ~~~ivE~s~~l~ 123 (362)
.|+.+|..|--.
T Consensus 96 ~~~S~e~~P~~~ 107 (252)
T COG4121 96 KFDSIELDPFSP 107 (252)
T ss_pred CEEEEEECCCCH
T ss_conf 168877078971
No 97
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=72.42 E-value=2.2 Score=22.74 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=65.1
Q ss_pred HHHCCCCCCCCC----CCCCCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 871089878646----8988888----88864576711799999999999999983888762141007864689888799
Q gi|254780410|r 27 LCVADPEFGYYS----TCNPFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILR 98 (362)
Q Consensus 27 ~aLy~p~~GYY~----~~~~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~ 98 (362)
-.||+.+.+|=- ....+|+ +|=+=|+--==.++=|+|+. + ..+-+|.+-+|+=+|.|+|...|.|++
T Consensus 21 ~~LY~e~s~fQ~~~I~~t~~fG~vLvLDg~vQ~TE~DEF~YhEMi~H--v---pL~~H~NPk~VLvIGGGDGG~lREV~K 95 (284)
T TIGR00417 21 KVLYEEKSEFQDVEIFETEEFGKVLVLDGVVQTTERDEFIYHEMIAH--V---PLFAHPNPKKVLVIGGGDGGVLREVVK 95 (284)
T ss_pred EEEEEEECCCEEEEEEECCCCCEEEEECCEEEECCCCCHHHHHHHHH--H---HHHCCCCCCEEEEEECCCCCEEEEEEE
T ss_conf 17666317732799982122070887558186032544356789987--5---653689885478996388846878875
Q ss_pred HHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 997418564301210236369789999986411102
Q gi|254780410|r 99 VICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 99 ~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
. . ..-+..+||+-..-++.-|+.|+.+.
T Consensus 96 H---~-----sVE~~~lVdID~~VI~~srkyLP~~~ 123 (284)
T TIGR00417 96 H---K-----SVEKATLVDIDEKVIELSRKYLPKLA 123 (284)
T ss_pred C---C-----CCCEEEEEECCHHHHHHHHHHCHHHH
T ss_conf 5---9-----81679999727478999888261210
No 98
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=71.27 E-value=8.1 Score=18.82 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 9999999983888762141007864689888799997418564301210236369789999986
Q gi|254780410|r 65 IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 65 ~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
+-+..+.++++....-+|+|+|.|=|.||.-..+. + -+++.-+-.|+...+.-++
T Consensus 154 ~Kl~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~--------~-g~~VtgiTlS~eQ~~~a~~ 208 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEH--------Y-GVSVVGVTISAEQQKLAQE 208 (383)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH--------C-CCEEEEEECCHHHHHHHHH
T ss_conf 99999998648999997988578749999999997--------4-9759998588999999999
No 99
>KOG1540 consensus
Probab=71.05 E-value=8.2 Score=18.78 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=42.8
Q ss_pred HHHHHHHHC-----CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 999999983-----8887621410078646898887999974185643012102363697899999864
Q gi|254780410|r 66 FLICAWEQH-----GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362)
Q Consensus 66 ~~~~~~~~~-----~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362)
-+-.+|+.+ +-+....+++++.|+|..|.-||++..... . ...-+..++++||.+-..-+++
T Consensus 83 GiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~-~-~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540 83 GIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQF-G-DRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC-C-CCCCEEEEEECCHHHHHHHHHH
T ss_conf 23678888766215877787589834775256777987611345-7-7776179993898999999877
No 100
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=70.80 E-value=8.3 Score=18.75 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=78.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCC
Q ss_conf 14100786468988879999741856430121023636978999998641110231011043444456956999812288
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFD 160 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lD 160 (362)
.-+++|||=|+...++|--+ --+.-+||+.+.+.+.-++.+..-..++. =+++
T Consensus 58 ~alDcGAGIGRVTk~lL~~~---------f~~VDlVEpv~~Fl~~ak~~l~~~~~~~~-------------~~~~----- 110 (217)
T pfam05891 58 VALDCGAGIGRVTKNLLLPL---------FSKVDLVEPVEDFLAKAKEYLAEEKKKVG-------------NFFC----- 110 (217)
T ss_pred EEEECCCCCCEECHHHHHHH---------CCEEEEECCCHHHHHHHHHHHHHCCCCCC-------------EEEE-----
T ss_conf 66542676361126678875---------48135754449999999998740379765-------------3897-----
Q ss_pred CCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 75235899915664689989960795352257643432234633165684112793478999999997620570599962
Q gi|254780410|r 161 SLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID 240 (362)
Q Consensus 161 AlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iD 240 (362)
+++. + |.+.+. ..-.-|..+-.|+.. ..+.-.+++...+.|+.+ |++++=+
T Consensus 111 ------------------~gLQ-d----f~P~~~---~YD~IW~QW~~ghLt--D~dlv~Fl~RCk~~L~~~-G~IvvKE 161 (217)
T pfam05891 111 ------------------VGLQ-D----FTPEEG---RYDLIWIQWCIGHLT--DEDLVAFLKRCKSGLKPN-GIIVIKE 161 (217)
T ss_pred ------------------CCCC-C----CCCCCC---EEEEEEEHHHHCCCC--HHHHHHHHHHHHHHCCCC-CEEEEEE
T ss_conf ------------------3610-1----689998---176998058452188--899999999999847898-6499842
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHH
Q ss_conf 4336858888077640576767000100034531268899999999689836332338999
Q gi|254780410|r 241 YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKF 301 (362)
Q Consensus 241 YGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~F 301 (362)
= -. .. .+.+ -..|-+-.=.-..+.++++++|++++.-..|..|
T Consensus 162 N---~~-~~-----------~~~~---D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~gf 204 (217)
T pfam05891 162 N---VT-QE-----------GVIF---DDVDSSVTRGEASFRKIFKKAGLKLVAEERQKGL 204 (217)
T ss_pred C---CC-CC-----------CCEE---CCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHCCC
T ss_conf 2---36-77-----------7741---5654543177999999999859856604330689
No 101
>KOG1774 consensus
Probab=70.68 E-value=1.8 Score=23.24 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=27.1
Q ss_pred CCCC-CHHHHHHHHHCCCCCCCCCC--CCCCCC---CCCEEECC
Q ss_conf 8980-49999998710898786468--988888---88864576
Q gi|254780410|r 16 NGQM-TVDQYFALCVADPEFGYYST--CNPFGA---VGDFVTAP 53 (362)
Q Consensus 16 ~G~i-~f~~fM~~aLy~p~~GYY~~--~~~~G~---~GDF~Tsp 53 (362)
.|.| .|++||...|-+-+.=+-.+ +.++|+ +||=+|.-
T Consensus 40 eG~IvGFDEyMNvVlD~aeev~~k~~~rk~lGRilLKGDnItli 83 (88)
T KOG1774 40 EGRIVGFDEYMNLVLDDAEEVHSKTKSRKELGRILLKGDNITLI 83 (88)
T ss_pred EEEEECHHHHHHHHHCCHHHCCCCCCCCCCCCCEEECCCCEEEE
T ss_conf 67896258845531011532022135777013189738738999
No 102
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=67.84 E-value=9.5 Score=18.34 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 88762141007864689888799997418564301210236369789999986
Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
.+.++ ++|+|-|+|.....+. ..+|+ ..|+-+|+...-...-.+
T Consensus 53 ~~~p~-~lEIGfG~G~~l~~~A----~~~P~----~~fIGiE~~~~gv~~~~~ 96 (229)
T PRK00121 53 NDAPI-HLEIGFGRGEFLVEMA----KANPD----INFIGIEIHEPGVAKALK 96 (229)
T ss_pred CCCCE-EEEECCCCCHHHHHHH----HHCCC----CCEEEEEEEHHHHHHHHH
T ss_conf 99943-9996158969999999----86888----868999961699999999
No 103
>KOG4300 consensus
Probab=67.69 E-value=7.1 Score=19.19 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 38887621410078646898887999974185643012102363697899999864111
Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362)
Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362)
++......++|+|.|+|+=- +..| ..-..++..+|+|+.+++.-.+..++
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nf--------kfy~-~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300 72 LGKSGKGDVLEVGCGTGANF--------KFYP-WKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred HCCCCCCCEEEECCCCCCCC--------CCCC-CCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 34357513699614688885--------3555-78885689867848799999988864
No 104
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=66.99 E-value=9.9 Score=18.23 Aligned_cols=61 Identities=23% Similarity=0.426 Sum_probs=37.7
Q ss_pred EECCCCCHHHHHHHHHHH---HH-HHH-HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC
Q ss_conf 457671179999999999---99-999-8388876214100786468988879999741856430121023636
Q gi|254780410|r 50 VTAPEISQIFGEMLAIFL---IC-AWE-QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362)
Q Consensus 50 ~Tsp~is~~Fg~~ia~~~---~~-~~~-~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362)
-.-|+....|....+..- .. ... .......-.||++|.|+|.++..|++. .|. ++..+.+.
T Consensus 68 ~~~p~~~~~F~~aM~~~s~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~i~~~----~P~----l~~~v~Dl 133 (239)
T pfam00891 68 GADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRA----YPH----IKGIVFDL 133 (239)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH----CCC----CEEEEEEC
T ss_conf 5199999999999988888889999987137667876899679818999999998----899----83898646
No 105
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=63.46 E-value=8.2 Score=18.77 Aligned_cols=135 Identities=15% Similarity=0.235 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC--------CHHHHHHHHHHHHHCCCCHHCCCCHHHCCCC
Q ss_conf 76214100786468988879999741856430121023636--------9789999986411102310110434444569
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET--------SERLTLIQKKQLASYGDKINWYTSLADVPLG 149 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~--------s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~ 149 (362)
.+ .++|+|-|.|+++.++.. .+|+ ..|.=||+ .+..+-.--+....++.+.. +|.=+
T Consensus 20 ~p-~~~EIGcG~G~fl~~~A~----~nP~----~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~---Nl~~L--- 84 (216)
T TIGR00091 20 KP-LVLEIGCGKGRFLIKMAK----QNPD----KNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLR---NLHVL--- 84 (216)
T ss_pred CC-EEEEECCCCCCCHHHHHH----HCCC----CCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHH---HHHHH---
T ss_conf 54-489841687602689977----2799----727778999887410227289988755766178442---13522---
Q ss_pred CEEEEEECCCCCCCEEEEEEECC--CCEEEEEEEEECCCEEECCCC----CCCCCCCCC--CCCCCCCCEECCCHHHHHH
Q ss_conf 56999812288752358999156--646899899607953522576----434322346--3316568411279347899
Q gi|254780410|r 150 FTFLVANEFFDSLPIKQFVMTEH--GIRERMIDIDQHDSLVFNIGD----HEIKSNFLT--CSDYFLGAIFENSPCRDRE 221 (362)
Q Consensus 150 ~~iiiaNE~lDAlPv~~~~~~~~--~w~E~~V~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~g~~~E~~~~~~~~ 221 (362)
+.=||++++.|=- ++ .+..+++.+ .+- |-..- .-+...|.. ..-+..|-.+|..++...+
T Consensus 85 --~~DA~~l~~~~~~------~~PP~l~k~f~~F-PDP---W~KkRH~KRR~~~~~Fl~~~~~~L~~~G~i~~~TD~~~l 152 (216)
T TIGR00091 85 --CGDANELLEKFFP------DGPPSLSKVFLNF-PDP---WPKKRHNKRRITQPHFLKEVANVLKKGGVIELKTDNEPL 152 (216)
T ss_pred --HCCHHHHHHHHHC------CCCCCEEEEEEEC-CCC---CHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf --1360232045400------7898045688877-889---510210223425678999999970459689997078467
Q ss_pred HHHHHHHHHHCC-EEEEEE
Q ss_conf 999999762057-059996
Q gi|254780410|r 222 MQSISDRLACDG-GTAIVI 239 (362)
Q Consensus 222 ~~~i~~~l~~~~-G~~L~i 239 (362)
.+...+.+..+. .+..+=
T Consensus 153 fE~mL~~l~~~~q~f~~~~ 171 (216)
T TIGR00091 153 FEDMLKVLSENDQLFVIIS 171 (216)
T ss_pred HHHHHHHHHHCCCCEEEEE
T ss_conf 8999999965364124521
No 106
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.23 E-value=1.9 Score=23.14 Aligned_cols=221 Identities=15% Similarity=0.181 Sum_probs=102.0
Q ss_pred HHHCCCCCCCCCC---CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 8710898786468---9888888886457671179999999999999998388876214100786468988879999741
Q gi|254780410|r 27 LCVADPEFGYYST---CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKL 103 (362)
Q Consensus 27 ~aLy~p~~GYY~~---~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~ 103 (362)
.|||.|++|||.. ++..|..=|+.|-.-+=++||+.=-- --++.+..+- --|.|-++|.-.=+...-++-.....
T Consensus 75 ~aL~~pEHG~rG~~qage~vg~y~d~~tgipvySLyg~~~~P-t~emle~~DV-~vfDiQDvG~R~Ytyiytm~yameAs 152 (409)
T COG3876 75 TALCTPEHGYRGAAQAGETVGNYPDRKTGIPVYSLYGVKEKP-TKEMLEDCDV-FVFDIQDVGVRSYTYIYTMAYAMEAS 152 (409)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-CHHHHHCCCE-EEEECHHCCCEEHHHHHHHHHHHHHH
T ss_conf 997454435445543565567784324697179864046689-7788840888-99960003401006999999999999
Q ss_pred CHHHHHCCCEEEEE-CCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCC-------EEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf 85643012102363-697899999864111023101104344445695-------6999812288752358999156646
Q gi|254780410|r 104 KPDFFSVLSIYMVE-TSERLTLIQKKQLASYGDKINWYTSLADVPLGF-------TFLVANEFFDSLPIKQFVMTEHGIR 175 (362)
Q Consensus 104 ~p~~~~~l~~~ivE-~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~-------~iiiaNE~lDAlPv~~~~~~~~~w~ 175 (362)
. + .-.+++.++ ++|-=-+.-.--+.+ .+-+-...+--+|-.- +.++--|| |.-++.-+..=.+|.
T Consensus 153 ~-e--~~k~fiVLDRPNP~gG~~VeGplld--~~y~sfvg~ypIP~~yGmT~GElAllfn~ef--ai~a~vtVVpmkgWk 225 (409)
T COG3876 153 A-E--NGKEFIVLDRPNPMGGNIVEGPLLD--PRYKSFVGLYPIPYCYGMTPGELALLFNKEF--AINADVTVVPMKGWK 225 (409)
T ss_pred H-H--CCCCEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCEEEEECCCCC
T ss_conf 8-7--1993699678998888404677888--4211324666764012788899999866411--799956999535641
Q ss_pred EEEEEEEECCCEEECCCCCCCCCC---CC-CC------CCCC--CCCEECCCHHHHHHHH--HHHHHHHH---CCEEEEE
Q ss_conf 899899607953522576434322---34-63------3165--6841127934789999--99997620---5705999
Q gi|254780410|r 176 ERMIDIDQHDSLVFNIGDHEIKSN---FL-TC------SDYF--LGAIFENSPCRDREMQ--SISDRLAC---DGGTAIV 238 (362)
Q Consensus 176 E~~V~~~~~~~~~~~~~~~~~~~~---~~-~~------~~~~--~g~~~E~~~~~~~~~~--~i~~~l~~---~~G~~L~ 238 (362)
... +++ +-.+.|++.++..+.. +. +. .+.. .|++.........|++ .+++.+++ .+=.++-
T Consensus 226 R~m-~f~-dtgL~wv~pSPnmP~~~sa~vYp~tgiiegtniseGrGtTkPFeviGAPwmdg~kva~~lN~~~LpGV~Frp 303 (409)
T COG3876 226 RSM-DFD-DTGLIWVPPSPNMPDVQSAFVYPATGIIEGTNISEGRGTTKPFEVIGAPWMDGTKVADELNRLGLPGVTFRP 303 (409)
T ss_pred CCC-CCC-CCCCEECCCCCCCCCCCCCEEECCCCEEECCEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 235-204-568543169999998764125124314404144014566766321077323626899998745899727752
Q ss_pred ECCCCCCCCCCCEEEE-ECCC
Q ss_conf 6243368588880776-4057
Q gi|254780410|r 239 IDYGYLQSRVGDTLQA-VKGH 258 (362)
Q Consensus 239 iDYGy~~~r~~gTLr~-y~~H 258 (362)
+-|--.-.+..|+|+. ..=|
T Consensus 304 ~~f~P~FsK~~gelc~GVql~ 324 (409)
T COG3876 304 FSFEPFFSKYKGELCSGVQLV 324 (409)
T ss_pred EECCCCHHHCCCEEECCEEEE
T ss_conf 100442221122230325999
No 107
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=63.02 E-value=8.5 Score=18.68 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEE--EECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf 711799999999999999983888762141--007864689888799997418564301210236369
Q gi|254780410|r 54 EISQIFGEMLAIFLICAWEQHGFPSCVRLV--ELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362)
Q Consensus 54 ~is~~Fg~~ia~~~~~~~~~~~~p~~~~iv--E~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362)
+-..-||+.+|..+ .+..+.++ ++|||.=+|++-|++.+.- ..-..+-+|.+++.-
T Consensus 9 ~~t~~lg~~l~~~l--------~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~--~~~V~SPTFtlv~~Y 66 (149)
T COG0802 9 EATLALGERLAEAL--------KAGDVVLLSGDLGAGKTTLVRGIAKGLGV--DGNVKSPTFTLVEEY 66 (149)
T ss_pred HHHHHHHHHHHHHC--------CCCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCCCCCEEEEHHH
T ss_conf 99999999999657--------89988999778768859999999997499--975249876101211
No 108
>KOG0821 consensus
Probab=62.25 E-value=9.3 Score=18.39 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=28.8
Q ss_pred HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHH
Q ss_conf 8388876214100786468988879999741856430121023636978999
Q gi|254780410|r 73 QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTL 124 (362)
Q Consensus 73 ~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~ 124 (362)
..|.-++-.++|+|||.|-..++||+.= .-....||+.+.+..
T Consensus 45 ~A~~~~~~~v~eIgPgpggitR~il~a~---------~~RL~vVE~D~RFip 87 (326)
T KOG0821 45 KAGNLTNAYVYEIGPGPGGITRSILNAD---------VARLLVVEKDTRFIP 87 (326)
T ss_pred HCCCCCCCCEEEECCCCCCHHHHHHHCC---------HHHEEEEEECCCCCH
T ss_conf 6165552405884699872048988625---------235266631566474
No 109
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=60.44 E-value=13 Score=17.43 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=37.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 62141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
+-.++|+|.+-|.=+.-++..+. + .-+++.+|.++...+.-++++++.+
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~----~---~g~l~tiE~~~e~~~~A~~n~~~ag 108 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALP----D---DGRLTTIERDEERAEIARENLAEAG 108 (219)
T ss_pred CCEEEEEECCCCHHHHHHHHHCC----C---CCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 86499963523799999996388----8---9769997079899999999999759
No 110
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=60.25 E-value=10 Score=18.07 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCC------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 78999999997620570599962433685888807764057676------700010003453126889999999968983
Q gi|254780410|r 218 RDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYV------SPLVNPGQADLSSHVDFQRLSSIAILYKLY 291 (362)
Q Consensus 218 ~~~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~------dpl~~pG~~DITahVnFs~L~~~a~~~g~~ 291 (362)
....++..++.|+. +|. ++=||- =+.+|.+..-.|.+.+ ||- -|-.| ++.+...|.++|+.
T Consensus 117 ~~~lf~ga~~~L~~-gG~--l~lYGP--F~~~G~~ts~SN~~FD~~Lr~~dp~--~GiRD------~e~v~~lA~~~GL~ 183 (201)
T pfam06080 117 VEGLFRGAGRLLPP-GGV--LYIYGP--YNQDGELTSDSNRDFDRSLRQRDPE--WGIRD------IEDVIALAAAQGLQ 183 (201)
T ss_pred HHHHHHHHHHHHCC-CCE--EEEECC--CCCCCEECCCHHHHHHHHHHHCCCC--CCCCC------HHHHHHHHHHCCCC
T ss_conf 99999999998515-882--687465--0259976882589999999850963--37838------99999999987997
Q ss_pred EE
Q ss_conf 63
Q gi|254780410|r 292 IN 293 (362)
Q Consensus 292 ~~ 293 (362)
..
T Consensus 184 l~ 185 (201)
T pfam06080 184 LV 185 (201)
T ss_pred CC
T ss_conf 68
No 111
>PRK01581 speE spermidine synthase; Validated
Probab=59.80 E-value=13 Score=17.36 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=33.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 762141007864689888799997418564301210236369789999986
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
.+-+|+=+|+|+|--++.||++ | ..-++.+||.-|.+.+.-+.
T Consensus 139 ~~~rVLILGGGDGLAlREVLKy-----p---~Ve~VTLVDLDP~mt~Lar~ 181 (363)
T PRK01581 139 DPKRVLILGGGDGLALREVLKY-----E---TVLHVDLVDLDGSMIDMARN 181 (363)
T ss_pred CCCEEEEEECCCHHHHHHHHCC-----C---CCCEEEEEECCHHHHHHHHH
T ss_conf 8773899807643999998717-----9---85627899569999998751
No 112
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=58.90 E-value=14 Score=17.25 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=34.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 7621410078646898887999974185643012102363697899999
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q 126 (362)
....+||+|+|+-+=++-+|+.+...+ ..+.|+.+++|...-+.-
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~----~~~ryvpiDv~a~iL~~t 122 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRG----SLLRYVPIDVSASILRAT 122 (321)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCC----CCCEEEEECCCHHHHHHH
T ss_conf 865489716896288999999752137----740355402228999989
No 113
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=58.52 E-value=1.3 Score=24.30 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=26.8
Q ss_pred CCCCCCEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 8888886457671-17999999999999999838887621410078646898887999
Q gi|254780410|r 43 FGAVGDFVTAPEI-SQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRV 99 (362)
Q Consensus 43 ~G~~GDF~Tsp~i-s~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~ 99 (362)
-|++|+|+||-.| ..+..|+..+-.+.+ +..+.|..|.+ +|+|.|...||-.
T Consensus 319 AG~EGk~vTSR~i~dRL~~El~~NValrV-e~t~~pd~f~V----sGRGELhLsILiE 371 (603)
T COG1217 319 AGKEGKFVTSRQIRDRLNKELETNVALRV-EETESPDAFEV----SGRGELHLSILIE 371 (603)
T ss_pred CCCCCCEEEHHHHHHHHHHHHHHCEEEEE-EECCCCCEEEE----ECCCEEEHHHHHH
T ss_conf 77678565589999999987641635998-73699973798----0564445788888
No 114
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=56.65 E-value=15 Score=17.01 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=30.5
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHH
Q ss_conf 388876214100786468988879999741856430121023636978999
Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTL 124 (362)
Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~ 124 (362)
++..+..+++=+|+ |.++..+++++.+... -+++++-.|..-.+
T Consensus 7 ~~~l~~~~vlVIGa--G~~~~~~~~~L~~~g~-----~~i~v~nRt~~ka~ 50 (134)
T pfam01488 7 FGDLKGKKVLLIGA--GEMARLAAKHLLSKGA-----KKITIANRTLEKAK 50 (134)
T ss_pred HCCCCCCEEEEECC--CHHHHHHHHHHHHCCC-----CEEEEECCCHHHHH
T ss_conf 38814898999996--0999999999997599-----88999547578999
No 115
>KOG2899 consensus
Probab=55.50 E-value=11 Score=17.87 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=90.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCC---CEEEE
Q ss_conf 762141007864689888799997418564301210236369789999986411102310110434444569---56999
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLG---FTFLV 154 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~---~~iii 154 (362)
.+..++++|..+|.|...|...+ . ...+.-+++-+.|++.-++.+....+...-+. ...|.. +-.=|
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F---~-----~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~--~~~~~~~~~~~~~i 127 (288)
T KOG2899 58 EPKQALDIGCNSGFLTLSIAKDF---G-----PRRILGVDIDPVLIQRARKEIRFPCDHETEVS--GKFPASFGVQFGPI 127 (288)
T ss_pred CCCEEEECCCCCCHHHHHHHHHH---C-----CCEEEEEECCHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCC
T ss_conf 76205750677546589999860---6-----43346761568999999973566010103345--78754335444541
Q ss_pred EECCCCCCCEEEEEEECCCCE--EEEEEEEECCCEEECCCCCCCCCCC----CCCCCCCCCCEECCCHHHHHHHHHHHHH
Q ss_conf 812288752358999156646--8998996079535225764343223----4633165684112793478999999997
Q gi|254780410|r 155 ANEFFDSLPIKQFVMTEHGIR--ERMIDIDQHDSLVFNIGDHEIKSNF----LTCSDYFLGAIFENSPCRDREMQSISDR 228 (362)
Q Consensus 155 aNE~lDAlPv~~~~~~~~~w~--E~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~E~~~~~~~~~~~i~~~ 228 (362)
|++.+---|+- -..-++.|. |.+|-. .++-+ |... ++....+ ..|--+..|+ -....++..|+..
T Consensus 128 s~~~~a~~a~t-~~~p~n~~f~~~n~vle-~~dfl-~~~~-~~fDiIlcLSiTkWIHLNwgD-----~GL~~ff~kis~l 198 (288)
T KOG2899 128 SQRNEADRAFT-TDFPDNVWFQKENYVLE-SDDFL-DMIQ-PEFDIILCLSITKWIHLNWGD-----DGLRRFFRKISSL 198 (288)
T ss_pred CCCCCCCCCCC-CCCCCCHHCCCCCEEEE-CCHHH-HHCC-CCCCEEEEEEEEEEEECCCCC-----HHHHHHHHHHHHH
T ss_conf 01244665100-36772010132337986-00455-5056-542279997733467645645-----7899999999986
Q ss_pred HHHCCEEEEEEC------CCCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCE
Q ss_conf 620570599962------433685888807764057676-70001000345312688999999996898363323
Q gi|254780410|r 229 LACDGGTAIVID------YGYLQSRVGDTLQAVKGHTYV-SPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296 (362)
Q Consensus 229 l~~~~G~~L~iD------YGy~~~r~~gTLr~y~~H~~~-dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~ 296 (362)
+ +-|.+|++. |+-...+..-+-+.|+++++. +-| +..++...|-|+.....+.......-|+.
T Consensus 199 l--~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f---~~~l~q~~vgle~~e~~~~~~~~~skgf~ 268 (288)
T KOG2899 199 L--HPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDF---EDWLNQIVVGLESVEDLGLIVSAASKGFD 268 (288)
T ss_pred H--CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCHHHH---HHHHHHHHHHEEEECCCCCCCCCCCCCCC
T ss_conf 0--8685799758861779999999998605840103288898---76542023323210010000246675556
No 116
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=54.46 E-value=16 Score=16.77 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=92.0
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 88645767117999999999999999838887621410078646898887999974185643012102363697899999
Q gi|254780410|r 47 GDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 (362)
Q Consensus 47 GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q 126 (362)
..|++-|.+ ..++.=..-+-...+.++....-+|+|+|.|-|.|+.=..+. | -.+.+-+..|+...+.-
T Consensus 43 cayf~~~~~--tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~--------y-~v~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 43 CAYFEDPDM--TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE--------Y-GVTVVGVTLSEEQLAYA 111 (283)
T ss_pred EEEECCCCC--CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH--------C-CCEEEEEECCHHHHHHH
T ss_conf 577579988--858999999999997569999998987478844999999998--------4-99799966899999999
Q ss_pred HHHHHHCCCC--HHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCC
Q ss_conf 8641110231--01104344445695699981228875235899915664689989960795352257643432234633
Q gi|254780410|r 127 KKQLASYGDK--INWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCS 204 (362)
Q Consensus 127 ~~~l~~~~~~--v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (362)
++++...+.. |.-. +.+.+. -+|.||++ |.+.- + ....
T Consensus 112 ~~r~~~~gl~~~v~v~--l~d~rd------~~e~fDrI----------------vSvgm---f-------------Ehvg 151 (283)
T COG2230 112 EKRIAARGLEDNVEVR--LQDYRD------FEEPFDRI----------------VSVGM---F-------------EHVG 151 (283)
T ss_pred HHHHHHCCCCCCCEEE--ECCCCC------CCCCCCEE----------------EEHHH---H-------------HHHC
T ss_conf 9999975997660799--656210------32434205----------------56006---8-------------8737
Q ss_pred CCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 16568411279347899999999762057059996243368588880776405767670001000345312688999999
Q gi|254780410|r 205 DYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSI 284 (362)
Q Consensus 205 ~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~ 284 (362)
. -....++..+.+.|+. +|.++..+=+...++.. .--.....+..||-.== -.+.+...
T Consensus 152 ~----------~~~~~ff~~~~~~L~~-~G~~llh~I~~~~~~~~------~~~~~i~~yiFPgG~lP----s~~~i~~~ 210 (283)
T COG2230 152 K----------ENYDDFFKKVYALLKP-GGRMLLHSITGPDQEFR------RFPDFIDKYIFPGGELP----SISEILEL 210 (283)
T ss_pred C----------CCHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCC------CCHHHHHHHCCCCCCCC----CHHHHHHH
T ss_conf 1----------0289999999964599-96599999667885544------33278998578998489----77999998
Q ss_pred HHHCCCEEECCE
Q ss_conf 996898363323
Q gi|254780410|r 285 AILYKLYINGLT 296 (362)
Q Consensus 285 a~~~g~~~~g~~ 296 (362)
+.+.|+.+.-..
T Consensus 211 ~~~~~~~v~~~~ 222 (283)
T COG2230 211 ASEAGFVVLDVE 222 (283)
T ss_pred HHHCCCEEEHHH
T ss_conf 875686884276
No 117
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=53.91 E-value=16 Score=16.71 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=36.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHH-CCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 14100786468988879999741856430-12102363697899999864111023
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFS-VLSIYMVETSERLTLIQKKQLASYGD 135 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~-~l~~~ivE~s~~l~~~Q~~~l~~~~~ 135 (362)
.++++||..|..+.-+.+... . .-+++.+|+.|...+..++++.....
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~-------~~~~~v~afEP~p~~~~~l~~n~~~n~~ 49 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGA-------EGGGRVIAFEPLPDAYEILEENVKLNGL 49 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCC-------CCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 978701770479999997417-------8873189986895799999986203787
No 118
>KOG0212 consensus
Probab=53.23 E-value=2.8 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=11.0
Q ss_pred HHCCCCHHHCCCCCEEEEEECCCCCC
Q ss_conf 01104344445695699981228875
Q gi|254780410|r 137 INWYTSLADVPLGFTFLVANEFFDSL 162 (362)
Q Consensus 137 v~w~~~l~~~~~~~~iiiaNE~lDAl 162 (362)
|.|+..++..|.-.-|=+--|+||-|
T Consensus 188 v~Wl~~Lds~P~~~m~~yl~~~ldGL 213 (675)
T KOG0212 188 VSWLYVLDSVPDLEMISYLPSLLDGL 213 (675)
T ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHH
T ss_conf 99999970378588985206888899
No 119
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=52.12 E-value=11 Score=17.95 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHH
Q ss_conf 14100786468988879999741856430121023636978999
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTL 124 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~ 124 (362)
.|+.+|.|+|+|..-+-+.-.-..|.- ..-+.+=||++..=.-
T Consensus 16 RVLDLGCGdG~LL~~L~d~k~v~GPPt-tehRL~G~Eid~~~v~ 58 (205)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGPPT-TEHRLYGIEIDQDGVL 58 (205)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCC-CCCEEEEEEECHHHHH
T ss_conf 364101688789999997437898887-1200010234544599
No 120
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=51.50 E-value=16 Score=16.82 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCCEEECCEEHHHHH
Q ss_conf 8999999996898363323389999
Q gi|254780410|r 278 FQRLSSIAILYKLYINGLTTQGKFL 302 (362)
Q Consensus 278 Fs~L~~~a~~~g~~~~g~~sQ~~FL 302 (362)
|-.-++.|.++|++.+-..-=.-+|
T Consensus 558 F~~AA~rA~~AGFD~IEiH~AHGYL 582 (770)
T PRK08255 558 FVAATRRAAEAGFDWLELHCAHGYL 582 (770)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 9999999998399989995234555
No 121
>KOG2918 consensus
Probab=51.44 E-value=18 Score=16.45 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=74.6
Q ss_pred ECCCCCHH-HHHHHHH--HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 57671179-9999999--99999998388876214100786468988879999741856430121023636978999998
Q gi|254780410|r 51 TAPEISQI-FGEMLAI--FLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQK 127 (362)
Q Consensus 51 Tsp~is~~-Fg~~ia~--~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~ 127 (362)
-+|+|..- +..+.|+ .+...+++ ...+.+||.+|+|--+|+..++.... +..+.|+=|+-++..+.+-
T Consensus 59 r~P~inRGy~~R~~aI~~~v~~Fl~~--~~~~~qivnLGcG~D~l~frL~s~~~------~~~~~fievDfp~~~~rKi- 129 (335)
T KOG2918 59 RAPEINRGYWARTMAIRHAVRAFLEQ--TDGKKQIVNLGAGFDTLYFRLLSSGE------LDRVKFIEVDFPEVVERKI- 129 (335)
T ss_pred CCCEECCHHHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHCCC------CCCCEEEEECCCHHHHHHH-
T ss_conf 78610101458999999999999985--57865999737775512331220477------6763289823728988777-
Q ss_pred HHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 64111023101104344445695699981228875235899915664689989960795352257643432234633165
Q gi|254780410|r 128 KQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYF 207 (362)
Q Consensus 128 ~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (362)
... ..|....++..+.-=|..+.+-...+.+.+.=...++.+-+.+...+.+.. .. .+.+
T Consensus 130 ~ik--------------~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~-----~d-~~lp 189 (335)
T KOG2918 130 SIK--------------RKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCG-----LD-TNLP 189 (335)
T ss_pred HHC--------------CCCCHHHHHHCCCCCCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHCC-----CC-CCCC
T ss_conf 630--------------468156666400114532368641116760265266033699999987506-----68-6766
Q ss_pred CCCEECCCHH------HHHHHHHHHHHHH
Q ss_conf 6841127934------7899999999762
Q gi|254780410|r 208 LGAIFENSPC------RDREMQSISDRLA 230 (362)
Q Consensus 208 ~g~~~E~~~~------~~~~~~~i~~~l~ 230 (362)
.-.+.|..+. +...++.++++..
T Consensus 190 Ti~iaEcvLvYM~pe~S~~Li~w~~~~F~ 218 (335)
T KOG2918 190 TIFIAECVLVYMEPEESANLIKWAASKFE 218 (335)
T ss_pred EEEHHHHHHEECCHHHHHHHHHHHHHHCC
T ss_conf 13441145313168888999999998577
No 122
>PRK03612 spermidine synthase; Provisional
Probab=50.66 E-value=18 Score=16.37 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHCCCCCCCCCC-C-CC---CCCCCCE----------EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 049999998710898786468-9-88---8888886----------4576711799999999999999983888762141
Q gi|254780410|r 19 MTVDQYFALCVADPEFGYYST-C-NP---FGAVGDF----------VTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLV 83 (362)
Q Consensus 19 i~f~~fM~~aLy~p~~GYY~~-~-~~---~G~~GDF----------~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~iv 83 (362)
-.+..+.+..||..+-=|+.+ + ++ ...++|. -++.| -.+-|++.. -....+|.+-+++
T Consensus 226 ~~~~~~~~~~lY~d~Vv~~~~t~yQ~IvvT~~~~~~rLyLdG~lQ~s~~DE--~~YhE~LvH-----p~m~~~~~p~~VL 298 (516)
T PRK03612 226 DRIEQTAEQLLYGDPVVYAEQTPYQRIVVTRRGDDLRLYLNGRLQFSSRDE--YRYHEALVH-----PALAASPRARRVL 298 (516)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCHH--HHHHHHHCC-----CCCCCCCCCCEEE
T ss_conf 378877787634674499833687189998037964899889233578648--887763404-----0215699977389
Q ss_pred EECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 007864689888799997418564301210236369789999986
Q gi|254780410|r 84 ELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 84 E~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
=+|.|+|.-++.+|++ | ...++.+||.-|...+.-++
T Consensus 299 iiGGGdG~a~revLk~-----~---~ve~v~lVelD~~vv~lar~ 335 (516)
T PRK03612 299 ILGGGDGLALREVLKY-----P---DVEQVTLVDLDPAVTELART 335 (516)
T ss_pred EECCCCCHHHHHHHCC-----C---CCCEEEEEECCHHHHHHHHH
T ss_conf 9837760879998648-----9---96637899518899999985
No 123
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=50.35 E-value=12 Score=17.56 Aligned_cols=27 Identities=7% Similarity=0.072 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 7934789999999976205705999624
Q gi|254780410|r 214 NSPCRDREMQSISDRLACDGGTAIVIDY 241 (362)
Q Consensus 214 ~~~~~~~~~~~i~~~l~~~~G~~L~iDY 241 (362)
++.+...|+++|.+. ++....+||||=
T Consensus 209 iNvAs~eWLq~l~~l-Cr~~DILLIVDD 235 (413)
T TIGR02407 209 INVASKEWLQRLEKL-CRRHDILLIVDD 235 (413)
T ss_pred CCCCCHHHHHHHHHH-HHHCCCEEEEEE
T ss_conf 031235579999999-986498687731
No 124
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily; InterPro: IPR005948 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. Thiamine pyrophosphate 1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The thiamine ABC transporter, periplasmic binding protein in bacteria is believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate TPP. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=49.49 E-value=6.8 Score=19.34 Aligned_cols=10 Identities=60% Similarity=1.258 Sum_probs=4.4
Q ss_pred EEEEEECCCC
Q ss_conf 0599962433
Q gi|254780410|r 234 GTAIVIDYGY 243 (362)
Q Consensus 234 G~~L~iDYGy 243 (362)
|.++.+||||
T Consensus 101 Gtf~p~DYGY 110 (324)
T TIGR01254 101 GTFLPVDYGY 110 (324)
T ss_pred CCEEEECCCE
T ss_conf 7460000121
No 125
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=48.15 E-value=20 Score=16.11 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=29.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH
Q ss_conf 14100786468988879999741856430121023636978999998641
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362)
.+.++|||+|-|+.=-.+ .+-+.+.+|+.|.....-.++|
T Consensus 35 ~~~DLGaGsGiLs~~Aa~----------~A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 35 TFADLGAGSGILSVVAAH----------AAERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred CEEECCCCCCHHHHHHHH----------HHCEEEEEECCCHHHHHHHHCC
T ss_conf 056346886328898875----------3202788741807877765057
No 126
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=48.00 E-value=20 Score=16.10 Aligned_cols=105 Identities=14% Similarity=0.253 Sum_probs=61.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHH-HCCCEEEEECCHHHHHHHHHHHHHC-----CCCHHCCCC-HHHCCCC
Q ss_conf 87621410078646898887999974185643-0121023636978999998641110-----231011043-4444569
Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFF-SVLSIYMVETSERLTLIQKKQLASY-----GDKINWYTS-LADVPLG 149 (362)
Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~-~~l~~~ivE~s~~l~~~Q~~~l~~~-----~~~v~w~~~-l~~~~~~ 149 (362)
+.+-+|+.+-+|+|.+|..+.+...+..-.-- +..+++.++.|+.+=+.=+++.++. ..+|.|+.. -.++|-
T Consensus 42 k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF- 120 (242)
T TIGR01934 42 KKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPF- 120 (242)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCC-
T ss_conf 8889778872383999999986357555335776337898707988999998741342003332164211000550879-
Q ss_pred CEEEEEECCCCCCCE----EEEEEECCCCEEEEEEEEECCCE
Q ss_conf 569998122887523----58999156646899899607953
Q gi|254780410|r 150 FTFLVANEFFDSLPI----KQFVMTEHGIRERMIDIDQHDSL 187 (362)
Q Consensus 150 ~~iiiaNE~lDAlPv----~~~~~~~~~w~E~~V~~~~~~~~ 187 (362)
+.--||++-+ |=|.-.+..++|.+=.+..++.+
T Consensus 121 -----~D~sFD~~TiaFGlRN~~d~~~aL~E~~RVLKpgG~l 157 (242)
T TIGR01934 121 -----EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRL 157 (242)
T ss_pred -----CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf -----9862444664025547468678987731101889879
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=47.82 E-value=20 Score=16.08 Aligned_cols=69 Identities=9% Similarity=0.155 Sum_probs=41.0
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 8645767117999999999999999838887621410078646898887999974185643012102363697899999
Q gi|254780410|r 48 DFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 (362)
Q Consensus 48 DF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q 126 (362)
.|.+|-.-.|+--. +.+.+...-..++..|+++|.|.|.-...+...+... ...+++=+++|+.-.+.-
T Consensus 60 ~fL~~G~y~pl~~~-----i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~-----~~~~~~G~DiSK~ai~~A 128 (272)
T PRK11088 60 AFLDAGHYQPLRDA-----VANLLAERLDEKATAILDIGCGEGYYTHALADALPEV-----TTCQLFGLDISKVAIKYA 128 (272)
T ss_pred HHHHCCCCHHHHHH-----HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCC-----CCCCEEEEECCHHHHHHH
T ss_conf 99976884799999-----9999997567778648881587778999999974115-----787379981179999999
No 128
>KOG3010 consensus
Probab=47.40 E-value=21 Score=16.04 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 141007864689888799997418564301210236369789999986
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
.++|+|+|+| .|.-++... + -+++.+++|+.+-+.-++
T Consensus 36 ~a~DvG~G~G-qa~~~iae~----~-----k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010 36 LAWDVGTGNG-QAARGIAEH----Y-----KEVIATDVSEAMLKVAKK 73 (261)
T ss_pred EEEEECCCCC-CCHHHHHHH----H-----HHHEEECCCHHHHHHHHC
T ss_conf 5888456887-114788875----4-----343130687999998611
No 129
>PRK06922 hypothetical protein; Provisional
Probab=47.26 E-value=21 Score=16.02 Aligned_cols=40 Identities=33% Similarity=0.569 Sum_probs=26.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 141007864689888799997418564301210236369789999986
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
.+|++|||-|.|+ |++ ....|+ -.++=+++|...++.-++
T Consensus 423 ~ivdiG~GGGVMl-dli---~E~~p~----~~i~GIDiS~NVIe~L~k 462 (679)
T PRK06922 423 TIVDVGAGGGVML-DMI---EEETED----KRIYGIDISENVIDTLKK 462 (679)
T ss_pred EEEEECCCCCHHH-HHH---HHHCCC----CCCEEEECCHHHHHHHHH
T ss_conf 7998669962148-766---765899----861466660889999988
No 130
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.17 E-value=6.9 Score=19.27 Aligned_cols=141 Identities=17% Similarity=0.274 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHCCCC-------------------CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH---HHHHHCC
Q ss_conf 8049999998710898-------------------78646898888888864576711799999999999---9999838
Q gi|254780410|r 18 QMTVDQYFALCVADPE-------------------FGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLI---CAWEQHG 75 (362)
Q Consensus 18 ~i~f~~fM~~aLy~p~-------------------~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~---~~~~~~~ 75 (362)
+-||.++.+..|---+ --||+...+=|+- .--|-+++--.-+..+-.... +.+.++.
T Consensus 28 ~~s~r~~vd~~leks~~~~~~~~l~dik~~l~t~S~~~yra~~rd~sl-h~~tdm~V~Ayias~lp~~Yasv~asL~~L~ 106 (484)
T COG5459 28 PASLRDAVDLNLEKSKAINNNIMLVDIKNALRTLSTRYYRAEQRDGSL-HCRTDMAVKAYIASRLPQTYASVRASLDELQ 106 (484)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 548999987655531111210457767788988630123232578860-3220388999999861578999999999999
Q ss_pred --CC--CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCHHCCC-----CHH
Q ss_conf --88--76214100786468988879999741856430121023636978999998641110--23101104-----344
Q gi|254780410|r 76 --FP--SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY--GDKINWYT-----SLA 144 (362)
Q Consensus 76 --~p--~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~--~~~v~w~~-----~l~ 144 (362)
.| ++-.|+++|+|-|+-+... ....|++ -+-+|+|.||.|++.--. +.+. ..+--|.. +.-
T Consensus 107 ~~~~dfapqsiLDvG~GPgtgl~A~----n~i~Pdl---~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl 178 (484)
T COG5459 107 KRVPDFAPQSILDVGAGPGTGLWAL----NDIWPDL---KSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRL 178 (484)
T ss_pred HHCCCCCCCHHHCCCCCCCHHHHHH----CCCCCCC---HHHHHHCCCHHHHHHHHH-HHHHCCCCCCCCCCCCCCHHCC
T ss_conf 7488868610200377875212332----0337880---221234048999999999-9860453347777886502104
Q ss_pred HCCC--CCE-EEEEECCCC-CCCEEEE
Q ss_conf 4456--956-999812288-7523589
Q gi|254780410|r 145 DVPL--GFT-FLVANEFFD-SLPIKQF 167 (362)
Q Consensus 145 ~~~~--~~~-iiiaNE~lD-AlPv~~~ 167 (362)
++|. ..+ +|..||++- -.+..++
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~ 205 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQ 205 (484)
T ss_pred CCCCCCEEEHHHHHHHHCCCCCCCHHH
T ss_conf 788322363334354444355743188
No 131
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=45.24 E-value=22 Score=15.82 Aligned_cols=86 Identities=19% Similarity=0.389 Sum_probs=57.9
Q ss_pred CCCCCCCEEECCCCCHHH-----------HHHHHH--HHHHH-HHHCCCC---CCCEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 888888864576711799-----------999999--99999-9983888---762141007864689888799997418
Q gi|254780410|r 42 PFGAVGDFVTAPEISQIF-----------GEMLAI--FLICA-WEQHGFP---SCVRLVELGPGRGIMMLDILRVICKLK 104 (362)
Q Consensus 42 ~~G~~GDF~Tsp~is~~F-----------g~~ia~--~~~~~-~~~~~~p---~~~~ivE~GaG~G~La~diL~~l~~~~ 104 (362)
++.+-|||+=--.|..+| .++|.. +++.+ +.+.--+ ..-.|.++|.-.|.....+-|.+.+-
T Consensus 8 ~~~kLG~f~FDE~VA~VF~DM~~RSvP~Y~~~~~~GayfI~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~~- 86 (247)
T TIGR00740 8 PIAKLGDFIFDEKVAEVFPDMIQRSVPGYSNIINLGAYFIGMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQD- 86 (247)
T ss_pred HHHHHCCHHCCCCHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCC-
T ss_conf 4876242001230322132566226832789999889999877776543311688741223343235776653046878-
Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 56430121023636978999998641110
Q gi|254780410|r 105 PDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 105 p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
.++++-|+-|+.+.++-|+.+..+
T Consensus 87 -----~~~~igIDNS~pM~~~~~~~~~~y 110 (247)
T TIGR00740 87 -----NIKIIGIDNSMPMLERCREHIKAY 110 (247)
T ss_pred -----CEEEEEECCCHHHHHHHHHHHHHH
T ss_conf -----537988418888999999999874
No 132
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=44.57 E-value=23 Score=15.75 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCE
Q ss_conf 78646898888888864576711799999999999999983888762141007864689888799997418564301210
Q gi|254780410|r 34 FGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSI 113 (362)
Q Consensus 34 ~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~ 113 (362)
.|-|..+. +-.-....|=|..+.+= |. +.+++.....-...+++++=||+|.|...-| ++ .+-+.
T Consensus 5 sG~~kgr~-l~~p~~~~~RPT~~rvr-Ea----lFniL~~~~~i~~~~~LDLFaGSGslglEAl---SR------GA~~v 69 (181)
T pfam03602 5 GGKYKGRK-LKVPPGPGTRPTTDRVR-EA----LFNILAPYFELGGARVLDLFAGSGALGLEAL---SR------GASSV 69 (181)
T ss_pred CCCCCCCE-ECCCCCCCCCCCCHHHH-HH----HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH---HC------CCCEE
T ss_conf 52478988-25799999576848899-99----9975013455489879982787269899999---76------99889
Q ss_pred EEEECCHHHHHHHHHHHHHC
Q ss_conf 23636978999998641110
Q gi|254780410|r 114 YMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 114 ~ivE~s~~l~~~Q~~~l~~~ 133 (362)
++||.++...+.-++++...
T Consensus 70 ~fvE~~~~a~~~i~~N~~~l 89 (181)
T pfam03602 70 VFVEKDKKAVATLKENLEAL 89 (181)
T ss_pred EEEECCHHHHHHHHHHHHHH
T ss_conf 99969999999999999985
No 133
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=43.20 E-value=24 Score=15.61 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCC-CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 999999838887-62141007864689888799997418564301210236369789999986411
Q gi|254780410|r 67 LICAWEQHGFPS-CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 67 ~~~~~~~~~~p~-~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
+++.++.+..+. .-.++.+|.|+|-|+--.+. ..+-+.+-++.-|.-.+.-|.++.
T Consensus 184 CLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~---------LGa~~~~g~D~DP~Ave~~r~N~~ 240 (330)
T TIGR00406 184 CLELLEDLDLKDKHKKVIDVGCGSGILSIAALK---------LGAAKVVGIDIDPLAVESARKNAE 240 (330)
T ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHH---------HHHHHEEEECCCHHHHHHHHHHHH
T ss_conf 999874014777665478712671789999997---------512311221377289999997687
No 134
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=42.37 E-value=3.3 Score=21.48 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=7.0
Q ss_pred CHHHHHHHHHCCCC
Q ss_conf 49999998710898
Q gi|254780410|r 20 TVDQYFALCVADPE 33 (362)
Q Consensus 20 ~f~~fM~~aLy~p~ 33 (362)
.|++||.+.|-|-+
T Consensus 47 GFDEyMNlVLddA~ 60 (89)
T PTZ00138 47 GFDEYMNMVLDQAT 60 (89)
T ss_pred ECCCEEEEEEEEEE
T ss_conf 11022256771249
No 135
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=42.24 E-value=25 Score=15.51 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=15.9
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 457671179999999999999998
Q gi|254780410|r 50 VTAPEISQIFGEMLAIFLICAWEQ 73 (362)
Q Consensus 50 ~Tsp~is~~Fg~~ia~~~~~~~~~ 73 (362)
.-.|++..+.|+=++.++.+.++-
T Consensus 209 L~~P~L~~~~G~D~~~~l~dELEL 232 (530)
T TIGR00503 209 LNNPALDSAVGSDLAQQLRDELEL 232 (530)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 688015677657899999889999
No 136
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=41.55 E-value=24 Score=15.56 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=15.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 457671179999999999999998
Q gi|254780410|r 50 VTAPEISQIFGEMLAIFLICAWEQ 73 (362)
Q Consensus 50 ~Tsp~is~~Fg~~ia~~~~~~~~~ 73 (362)
.-.|++..+.|+-+..++.+-.+.
T Consensus 209 ~~~p~~~~~l~~~~~~~~~ee~EL 232 (528)
T COG4108 209 LDNPELDALLGEDLAEQLREELEL 232 (528)
T ss_pred CCCHHHHHHHCHHHHHHHHHHHHH
T ss_conf 888677776244799999999999
No 137
>pfam01269 Fibrillarin Fibrillarin.
Probab=41.45 E-value=25 Score=15.43 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=30.9
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf 5767117999999999999999838887621410078646898887999974185643012102363697
Q gi|254780410|r 51 TAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362)
Q Consensus 51 Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362)
=.|--|.+-+.++ .-+ ..+.....-.|+=+||++||=.+.+-+..- ..-.++.||.||
T Consensus 51 W~P~RSKLaAail-~g~----~~~~i~~gskVLYLGAasGTTVSHvsDIvg-------~~G~VyAVE~sp 108 (229)
T pfam01269 51 WNPFRSKLAAAIL-KGL----DDIPIKPGSKVLYLGAASGTTVSHVSDIVG-------PEGVVYAVEFSP 108 (229)
T ss_pred ECCCCCHHHHHHH-CCC----CCCCCCCCCEEEEECCCCCCCHHHHHHHCC-------CCCEEEEEECCC
T ss_conf 7887018899997-587----556858998799944777985767887228-------895399997173
No 138
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=41.42 E-value=11 Score=17.94 Aligned_cols=259 Identities=15% Similarity=0.157 Sum_probs=117.2
Q ss_pred HHHHHH-HCCCCCHHHHH--HHHHCCCCCCCCCCC-CCCCC-CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf 999998-18980499999--987108987864689-88888-88864576711799999999999999983888762---
Q gi|254780410|r 9 IVNLIK-KNGQMTVDQYF--ALCVADPEFGYYSTC-NPFGA-VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCV--- 80 (362)
Q Consensus 9 i~~~I~-~~G~i~f~~fM--~~aLy~p~~GYY~~~-~~~G~-~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~--- 80 (362)
+...+| ++=.+||.+-| ++|-.|.- =||--+ + |-| .=-|+| +-+|- |..++++..+++.+-+--
T Consensus 324 vEtlvKtSHLf~PfP~a~~~DtAFfDR~-H~YiPGWE-IPKmRpEyFT-----~~YGf-ivDYlAE~~REmRkrsf~d~i 395 (677)
T TIGR02653 324 VETLVKTSHLFAPFPEAMREDTAFFDRI-HYYIPGWE-IPKMRPEYFT-----NRYGF-IVDYLAEYLREMRKRSFADAI 395 (677)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCCCCCCC-CCCCCCCCCC-----CCCCH-HHHHHHHHHHHHHCCCHHHHH
T ss_conf 5788877653044068874102567556-30588876-8887644201-----77760-356789999985201112455
Q ss_pred -EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC----CCHHCCCCHHHCCCCCEEEEE
Q ss_conf -141007864689888799997418564301210236369789999986411102----310110434444569569998
Q gi|254780410|r 81 -RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG----DKINWYTSLADVPLGFTFLVA 155 (362)
Q Consensus 81 -~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~----~~v~w~~~l~~~~~~~~iiia 155 (362)
..--+|+. -=++|+.-. ++.-..+ .-++-|.....+.|-+..-+.+ -+|+ +.+++-.++
T Consensus 396 drfFklGnn--LNqRDViAV-rkTvSGL-----~KLlyP~~~~tk~~~~~~l~yalegRRRVK-----EQLKK~Gg~--- 459 (677)
T TIGR02653 396 DRFFKLGNN--LNQRDVIAV-RKTVSGL-----LKLLYPDGEYTKDDVREILDYALEGRRRVK-----EQLKKLGGL--- 459 (677)
T ss_pred HHHHHHCCC--CCCCCHHHH-HHHHCEE-----EEEECCCCCCCHHHHHHHHHHHHCCCCHHH-----HHHHHHCCC---
T ss_conf 566651232--332313212-1100100-----001268855687999999887623562036-----666430673---
Q ss_pred ECCCCCCCEEEEEEECCC-CEEEEEEEEECCCEEECCCCCCCCCCCCCC----CCCCCCCEECCCHHHHHHHHHHHHH--
Q ss_conf 122887523589991566-468998996079535225764343223463----3165684112793478999999997--
Q gi|254780410|r 156 NEFFDSLPIKQFVMTEHG-IRERMIDIDQHDSLVFNIGDHEIKSNFLTC----SDYFLGAIFENSPCRDREMQSISDR-- 228 (362)
Q Consensus 156 NE~lDAlPv~~~~~~~~~-w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~E~~~~~~~~~~~i~~~-- 228 (362)
||||. + |.+.+|. ..|.+|.+=+.+.-...+.....+-..-.. ...---|++|+...+..==-+++..
T Consensus 460 -Effdv---~-FSYiDNe~leE~fv~VPE~GG~~lIp~g~~~pG~vy~v~~~~~G~~GlYrfEvqv~AG~GK~~~sG~Gs 534 (677)
T TIGR02653 460 -EFFDV---N-FSYIDNESLEEFFVSVPEEGGSKLIPAGLLKPGVVYAVTQNESGKVGLYRFEVQVVAGSGKHKVSGLGS 534 (677)
T ss_pred -EEEEC---E-EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEECCC
T ss_conf -06622---0-467207873122774570044322657788887289986558885636898888873476122321256
Q ss_pred --HHHCCEEEEEECCCCCCCCCCCEEEEECCCCC-CC--CCCCCCCCCCCCCCCHHHHHHHHHH----CCCEEECCEE
Q ss_conf --62057059996243368588880776405767-67--0001000345312688999999996----8983633233
Q gi|254780410|r 229 --LACDGGTAIVIDYGYLQSRVGDTLQAVKGHTY-VS--PLVNPGQADLSSHVDFQRLSSIAIL----YKLYINGLTT 297 (362)
Q Consensus 229 --l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~-~d--pl~~pG~~DITahVnFs~L~~~a~~----~g~~~~g~~s 297 (362)
-.++ -.-..|||=--...+-+.--.+..|.+ .+ -|.+.|-.-=++---|=+|-.++.+ .++-++|-+|
T Consensus 535 ~t~~KE-si~~aF~yfkgn~~~~s~~~~f~~~dyhlhv~dL~~~g~s~~~~laa~Ial~S~~~~~~vqeqmviLG~mt 611 (677)
T TIGR02653 535 NTTAKE-SIRVAFDYFKGNLKRISASAKFSEKDYHLHVVDLHNTGVSTEASLAALIALCSALLKRPVQEQMVILGSMT 611 (677)
T ss_pred CCCCHH-HHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf 631016-78876677531342231467870640079987131788555678999999999986168887518986313
No 139
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=40.85 E-value=26 Score=15.37 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=16.9
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999838887621410078646898887999
Q gi|254780410|r 66 FLICAWEQHGFPSCVRLVELGPGRGIMMLDILRV 99 (362)
Q Consensus 66 ~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~ 99 (362)
..+..+.+.+.... |+|.-+|+--.+....-.
T Consensus 54 ~~i~~~~~~~~~~~--vv~aSsGN~G~a~A~~aa 85 (304)
T cd01562 54 NKLLSLSEEERAKG--VVAASAGNHAQGVAYAAK 85 (304)
T ss_pred HHHHHHHHHCCCCC--EEEECCCHHHHHHHHHHH
T ss_conf 99999887074585--699688599999999999
No 140
>pfam03352 Adenine_glyco Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.
Probab=40.32 E-value=26 Score=15.37 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCEEECCEEHHHHHHHCCHH
Q ss_conf 999999996898363323389999978979
Q gi|254780410|r 279 QRLSSIAILYKLYINGLTTQGKFLEGLGIW 308 (362)
Q Consensus 279 s~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~ 308 (362)
.++.+..++.|++.+|+++=..||.+.|+.
T Consensus 138 ~~isk~LKkrGFkFvGpt~~ysfmQA~G~v 167 (179)
T pfam03352 138 DAISKDLKKRGFKFVGPTIVYAFMQAVGMV 167 (179)
T ss_pred HHHHHHHHHCCCEEECHHHHHHHHHHHCCC
T ss_conf 999999987879464669999999996883
No 141
>TIGR01734 D-ala-DACP-lig D-alanine-activating enzyme; InterPro: IPR010072 This entry represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP to D-ala-AMP + PPi, and further catalyses the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in Gram-positive bacteria, both polysacchatides .; GO: 0016208 AMP binding, 0047473 D-alanine-poly(phosphoribitol) ligase activity, 0019350 teichoic acid biosynthetic process.
Probab=40.01 E-value=27 Score=15.28 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=55.7
Q ss_pred HHHHHHHHHCC---CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHH--HHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 99999998189---804999999871089878646898888888864576711799--9999999999999838887621
Q gi|254780410|r 7 RKIVNLIKKNG---QMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIF--GEMLAIFLICAWEQHGFPSCVR 81 (362)
Q Consensus 7 ~~i~~~I~~~G---~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~F--g~~ia~~~~~~~~~~~~p~~~~ 81 (362)
+.|-+.|.+.| |+|=--||++||=+| +.+..+- |.+..++ ||.|+.-.++.+.. ..|+.--
T Consensus 229 K~Lf~~l~~~~ln~WvSTPSFvd~cLLdp---~F~~e~~----------P~l~~F~FCGE~L~~ktA~~Ll~-RFP~A~I 294 (513)
T TIGR01734 229 KLLFEELPKTGLNVWVSTPSFVDMCLLDP---NFNQENY----------PQLTHFLFCGEELTKKTAKALLE-RFPSATI 294 (513)
T ss_pred HHHHHHHCCCCCCEEECCHHHHHHHHCCC---CCCHHHC----------CCCCEEEECCCCCHHHHHHHHHH-HCCCCEE
T ss_conf 89999722478746604666999984688---7772117----------88443532574632689999984-1889779
Q ss_pred EEEECCCCHHHHHHHHHHHH
Q ss_conf 41007864689888799997
Q gi|254780410|r 82 LVELGPGRGIMMLDILRVIC 101 (362)
Q Consensus 82 ivE~GaG~G~La~diL~~l~ 101 (362)
.==.||=.-|-|..=+...+
T Consensus 295 yNTYGPTEATVAvtsv~iT~ 314 (513)
T TIGR01734 295 YNTYGPTEATVAVTSVKITQ 314 (513)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 74789823656650889999
No 142
>KOG1500 consensus
Probab=39.53 E-value=27 Score=15.24 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=33.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH--HCCCCHHCCC-CHH--HCCCCCEEEEE
Q ss_conf 141007864689888799997418564301210236369789999986411--1023101104-344--44569569998
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA--SYGDKINWYT-SLA--DVPLGFTFLVA 155 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~--~~~~~v~w~~-~l~--~~~~~~~iiia 155 (362)
.+++.|||+|-|.. +. .....-++|.||.|.-..-.+ +.++ .+.++|.-+. .++ ++|....+||+
T Consensus 180 iVlDVGaGSGILS~-----FA----aqAGA~~vYAvEAS~MAqyA~-~Lv~~N~~~~rItVI~GKiEdieLPEk~DviIS 249 (517)
T KOG1500 180 IVLDVGAGSGILSF-----FA----AQAGAKKVYAVEASEMAQYAR-KLVASNNLADRITVIPGKIEDIELPEKVDVIIS 249 (517)
T ss_pred EEEEECCCCCHHHH-----HH----HHHCCCEEEEEEHHHHHHHHH-HHHHCCCCCCEEEECCCCCCEECCCCCCCEEEE
T ss_conf 89981588248999-----99----873865389874567999999-987436632037870563201037510347872
No 143
>KOG4278 consensus
Probab=39.45 E-value=27 Score=15.23 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEECCEE
Q ss_conf 003453126889999999968983633233
Q gi|254780410|r 268 GQADLSSHVDFQRLSSIAILYKLYINGLTT 297 (362)
Q Consensus 268 G~~DITahVnFs~L~~~a~~~g~~~~g~~s 297 (362)
|.+=+|+-+-|..|++.-.-+-....|+++
T Consensus 209 gK~yvt~EsrF~TLaELVHHHStvADGLit 238 (1157)
T KOG4278 209 GKMYVTQESRFRTLAELVHHHSTVADGLIT 238 (1157)
T ss_pred CCEEEEEHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 647985134567899987521101154346
No 144
>KOG1252 consensus
Probab=39.37 E-value=27 Score=15.22 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=47.9
Q ss_pred HHCCC--CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCC
Q ss_conf 98388--8762141007864689888799997418564301210236369789999986411102310110434444569
Q gi|254780410|r 72 EQHGF--PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLG 149 (362)
Q Consensus 72 ~~~~~--p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~ 149 (362)
+..|. |..-+++|--.|+=-.+....-.++ -.+++++=+ ..+..+.+..|..++..|.-.. ...--.+
T Consensus 95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~--------Gyk~i~tmP-~~ms~Ek~~~l~a~Gaeii~tp-~a~~~~~ 164 (362)
T KOG1252 95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALR--------GYKCIITMP-EKMSKEKRILLRALGAEIILTP-PAAGMKG 164 (362)
T ss_pred HHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC--------CCEEEEEEC-HHHHHHHHHHHHHCCCEEEECC-HHHCCCC
T ss_conf 97598558961798269985389999999973--------963999904-2451789999997188799568-6872477
Q ss_pred ------CEEEEEECCCCCCCEEEEEEECC
Q ss_conf ------56999812288752358999156
Q gi|254780410|r 150 ------FTFLVANEFFDSLPIKQFVMTEH 172 (362)
Q Consensus 150 ------~~iiiaNE~lDAlPv~~~~~~~~ 172 (362)
..-.+-||+=||.=.+||.-..+
T Consensus 165 ~e~ai~~a~~l~~~~pna~~l~Qf~np~N 193 (362)
T KOG1252 165 PESAIGKAEELLNKTPNAYILDQFHNPGN 193 (362)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 18899999999986887387887428888
No 145
>KOG2793 consensus
Probab=39.29 E-value=14 Score=17.23 Aligned_cols=13 Identities=38% Similarity=0.877 Sum_probs=11.0
Q ss_pred CCCEEEEECCCCH
Q ss_conf 7621410078646
Q gi|254780410|r 78 SCVRLVELGPGRG 90 (362)
Q Consensus 78 ~~~~ivE~GaG~G 90 (362)
+..+++|+|+|.|
T Consensus 86 ~~~~vlELGsGtg 98 (248)
T KOG2793 86 KYINVLELGSGTG 98 (248)
T ss_pred CCEEEEEECCCCC
T ss_conf 6405899668755
No 146
>KOG1271 consensus
Probab=39.06 E-value=27 Score=15.19 Aligned_cols=91 Identities=18% Similarity=0.301 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCHHHHHHHH
Q ss_conf 04999999871089878646898888888864576711799999999999999983888762-14100786468988879
Q gi|254780410|r 19 MTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCV-RLVELGPGRGIMMLDIL 97 (362)
Q Consensus 19 i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~-~ivE~GaG~G~La~diL 97 (362)
+--.+|.+. +|.-+.--|+. .|-.|+---..+. -+-+-.|+.+..........- +|+.+|-|+|.|...+.
T Consensus 15 LGtK~yWD~-~Y~~El~Nfr~---hgd~GEvWFg~~a----e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271 15 LGTKSYWDA-AYELELTNFRE---HGDEGEVWFGEDA----EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred CCHHHHHHH-HHHHHHHHCCC---CCCCCCEECCCCH----HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
T ss_conf 444888998-99999860366---7876335607738----999999998654441102243211661579618899988
Q ss_pred HHHHHCCHHHHHCCCEEEEECCHHHHHH
Q ss_conf 9997418564301210236369789999
Q gi|254780410|r 98 RVICKLKPDFFSVLSIYMVETSERLTLI 125 (362)
Q Consensus 98 ~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362)
+. +|.. ...=|+-|+...+.
T Consensus 87 ~e------gf~~--~L~GvDYs~~AV~L 106 (227)
T KOG1271 87 KE------GFQS--KLTGVDYSEKAVEL 106 (227)
T ss_pred HH------CCCC--CCCCCCCCHHHHHH
T ss_conf 71------3888--86453157889999
No 147
>KOG0384 consensus
Probab=39.01 E-value=15 Score=17.08 Aligned_cols=79 Identities=11% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE--EECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf 88888864576711799999999999999983888762141--0078646898887999974185643012102363697
Q gi|254780410|r 43 FGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLV--ELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362)
Q Consensus 43 ~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~iv--E~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362)
+-+.-.|...-++-- |--.=-+|++..|-.-. +. |+ |+|=|.--=...+|.+|.... .. --.+.+|=+-.
T Consensus 359 le~qP~y~~g~~LRD-YQLeGlNWLl~~W~k~~---n~-ILADEMGLGKTvQtI~FLs~l~~~~-~~--~GPfLvVvPLS 430 (1373)
T KOG0384 359 LEKQPEYKGGNELRD-YQLEGLNWLLYSWYKRN---NC-ILADEMGLGKTVQTITFLSYLFHSL-QI--HGPFLVVVPLS 430 (1373)
T ss_pred HHCCCCCCCCCCHHH-HHHCCHHHHHHHHHCCC---CE-EEECCCCCCCHHHHHHHHHHHHHHC-CC--CCCEEEEEECC
T ss_conf 640943126761446-56313289999886468---64-7540025774013459999999845-44--78869998640
Q ss_pred HHHHHHHHH
Q ss_conf 899999864
Q gi|254780410|r 121 RLTLIQKKQ 129 (362)
Q Consensus 121 ~l~~~Q~~~ 129 (362)
.+...|++.
T Consensus 431 Ti~~W~ref 439 (1373)
T KOG0384 431 TITAWEREF 439 (1373)
T ss_pred CCHHHHHHH
T ss_conf 007899999
No 148
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=38.87 E-value=16 Score=16.87 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHCCCCCCCCCC-CC-CCCCCCCEEECCCC------CHHHHHHHHHHHHHHHH-----HCCCCCCCEEEE
Q ss_conf 8049999998710898786468-98-88888886457671------17999999999999999-----838887621410
Q gi|254780410|r 18 QMTVDQYFALCVADPEFGYYST-CN-PFGAVGDFVTAPEI------SQIFGEMLAIFLICAWE-----QHGFPSCVRLVE 84 (362)
Q Consensus 18 ~i~f~~fM~~aLy~p~~GYY~~-~~-~~G~~GDF~Tsp~i------s~~Fg~~ia~~~~~~~~-----~~~~p~~~~ivE 84 (362)
-+||.++|..-.-+ ||.. .+ .=|+ -||..-+=- ..+|=|.|.|.=+++.. +.....--.+++
T Consensus 81 ~~P~~~~~A~L~~~----yYl~L~~~VRG~-~~F~~~VP~PP~TRED~LyyE~~HRSN~~l~~~LL~~~A~L~~V~~lID 155 (306)
T TIGR02716 81 QVPVVDAIADLIDD----YYLRLADVVRGK-KDFKSIVPYPPVTREDSLYYEELHRSNIKLAIELLLKRAKLDDVKKLID 155 (306)
T ss_pred CCCHHHHHHHHHHH----HHHHHHHHHCCC-CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 16689999999887----755456652453-1440006865887765404667767689999999998751631325433
Q ss_pred ECCCCHHHHHHHHHHHHH
Q ss_conf 078646898887999974
Q gi|254780410|r 85 LGPGRGIMMLDILRVICK 102 (362)
Q Consensus 85 ~GaG~G~La~diL~~l~~ 102 (362)
+|.|=|..++.+++.+-+
T Consensus 156 VGGGIGDI~AAl~~~FP~ 173 (306)
T TIGR02716 156 VGGGIGDIAAALLKAFPE 173 (306)
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 388877899999973775
No 149
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=37.89 E-value=20 Score=16.07 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=9.9
Q ss_pred CCEECCCHHHHHHHHHHHH
Q ss_conf 8411279347899999999
Q gi|254780410|r 209 GAIFENSPCRDREMQSISD 227 (362)
Q Consensus 209 g~~~E~~~~~~~~~~~i~~ 227 (362)
.|+-=+|.-....++.|+.
T Consensus 131 dY~RVVSCNTTgL~RTln~ 149 (335)
T TIGR01546 131 DYVRVVSCNTTGLVRTLNA 149 (335)
T ss_pred CEEEEEEECHHHHHHHHHH
T ss_conf 6389984162678876643
No 150
>KOG2328 consensus
Probab=37.24 E-value=15 Score=16.91 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=12.5
Q ss_pred EEECCCCCHHHHHHHHHH
Q ss_conf 645767117999999999
Q gi|254780410|r 49 FVTAPEISQIFGEMLAIF 66 (362)
Q Consensus 49 F~Tsp~is~~Fg~~ia~~ 66 (362)
|-|++++.|+|+++.|.+
T Consensus 191 ~D~~~~iDPlf~K~~adf 208 (702)
T KOG2328 191 LDTALLIDPLFKKTCADF 208 (702)
T ss_pred HHHHHCCCHHHHHHCCCC
T ss_conf 533112470455312783
No 151
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=37.22 E-value=29 Score=15.00 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=34.8
Q ss_pred EEECCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHHHHCCHH
Q ss_conf 764057676-70001000345312688999999996898363323389999978979
Q gi|254780410|r 253 QAVKGHTYV-SPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIW 308 (362)
Q Consensus 253 r~y~~H~~~-dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~ 308 (362)
=.|-+|+.. +.+..+++..-++.. =.++.+..++.|++.+|+++=..||.+.|+.
T Consensus 117 W~fv~~~p~~~~~~~~~~vP~~t~l-S~~iskdLKkrGFkFVGpt~~ysfmQA~G~v 172 (189)
T PRK10353 117 WSFVNHQPQVTQATTLSEIPTSTPA-SDALSKALKKRGFKFVGTTICYSFMQACGLV 172 (189)
T ss_pred HHCCCCCCCCCCCCCHHHCCCCCHH-HHHHHHHHHHCCCEEECHHHHHHHHHHHCCC
T ss_conf 8727998876884566436788887-9999999997889361679999999985896
No 152
>KOG2651 consensus
Probab=37.15 E-value=29 Score=14.99 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=28.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 141007864689888799997418564301210236369789999986
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362)
++|.+|||.|.|++=+ .+-..+..+.||-|..+.++-++
T Consensus 156 ~vvD~GaG~G~LSr~l---------Sl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651 156 QVVDVGAGQGHLSRFL---------SLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHCCCCCCCHHHHHH---------HHCCCCEEEEECCCHHHHHHHHH
T ss_conf 1411577732899998---------64268169996463688999998
No 153
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=36.95 E-value=30 Score=14.97 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.4
Q ss_pred CEEEEECCCCHHHH
Q ss_conf 21410078646898
Q gi|254780410|r 80 VRLVELGPGRGIMM 93 (362)
Q Consensus 80 ~~ivE~GaG~G~La 93 (362)
..||+.=+|+-..+
T Consensus 52 ~~vv~aSsGN~g~a 65 (316)
T cd06448 52 VHVVCSSGGNAGLA 65 (316)
T ss_pred CEEEEECCCHHHHH
T ss_conf 86999489679999
No 154
>PRK04266 fibrillarin; Provisional
Probab=36.18 E-value=30 Score=14.89 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=36.3
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH
Q ss_conf 576711799999999999999983888762141007864689888799997418564301210236369789
Q gi|254780410|r 51 TAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362)
Q Consensus 51 Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362)
=.|--|.+-+.++ .-...+.....-.|+=+||++||=.+.+-+.. ..-.++.||.||.-
T Consensus 50 W~P~RSKLaAail-----~g~~~~~i~~gskVLYLGAasGTTVSHvsDiV--------~~G~VyAVE~spr~ 108 (226)
T PRK04266 50 WNPRRSKLAAAIL-----NGLKNFPIKKGSKVLYLGAASGTTVSHVSDIV--------EEGRVYAVEFAPRV 108 (226)
T ss_pred ECCCCCHHHHHHH-----CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHC--------CCCEEEEEEECCHH
T ss_conf 7887219999997-----69755675899879995477798488898751--------79649999827077
No 155
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=35.90 E-value=31 Score=14.86 Aligned_cols=76 Identities=9% Similarity=0.191 Sum_probs=49.1
Q ss_pred HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC-CHH-HCCCCC
Q ss_conf 838887621410078646898887999974185643012102363697899999864111023101104-344-445695
Q gi|254780410|r 73 QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT-SLA-DVPLGF 150 (362)
Q Consensus 73 ~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~-~l~-~~~~~~ 150 (362)
.+..+.--+.+|+|-+.|.|...+...- -....++.|+...+.-++++++.. .|.|.. +++ +.|.+.
T Consensus 38 aLp~~ry~~alE~GCa~G~lT~~LA~RC----------drLla~Dvs~~Av~~Ar~Rla~~~-hV~v~~~~vp~~wP~~~ 106 (201)
T pfam05401 38 SLAQGTIANALEVGCAAGAFTERLAPYC----------QRLTVIDVMPEAIARARLRMKKWS-HISWIVSDVQQFSTNEL 106 (201)
T ss_pred HCCCHHHHHHCCCCCCCCHHHHHHHHHH----------HHHHHHCCCHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCC
T ss_conf 6783433002043566248789999987----------467321362999999999855799-82898256666599888
Q ss_pred -EEEEEECCC
Q ss_conf -699981228
Q gi|254780410|r 151 -TFLVANEFF 159 (362)
Q Consensus 151 -~iiiaNE~l 159 (362)
..|+.-|++
T Consensus 107 FDLIV~SEVl 116 (201)
T pfam05401 107 FDLIVVAEVL 116 (201)
T ss_pred EEEEEEEHHH
T ss_conf 6279751477
No 156
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=35.86 E-value=31 Score=14.85 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCEEECCEEHHHHHHHCCHHH
Q ss_conf 9999999968983633233899999789799
Q gi|254780410|r 279 QRLSSIAILYKLYINGLTTQGKFLEGLGIWQ 309 (362)
Q Consensus 279 s~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~~ 309 (362)
.++.++.++.|++.+|+|+=..|+..+|+..
T Consensus 144 ~~mskaLKkrGf~fvGpTt~yafmqA~G~vn 174 (188)
T COG2818 144 DAMSKALKKRGFKFVGPTTVYAFMQATGLVN 174 (188)
T ss_pred HHHHHHHHHCCCEECCCHHHHHHHHHHCCHH
T ss_conf 9999999986694348389999999975647
No 157
>KOG2950 consensus
Probab=35.35 E-value=22 Score=15.82 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHCCCC
Q ss_conf 049999998710898
Q gi|254780410|r 19 MTVDQYFALCVADPE 33 (362)
Q Consensus 19 i~f~~fM~~aLy~p~ 33 (362)
....++|+.-.+|.+
T Consensus 97 FnlkEe~EEG~FD~d 111 (348)
T KOG2950 97 FNLKEEKEEGHFDAD 111 (348)
T ss_pred CCHHHHHHCCCCCCC
T ss_conf 540557655774677
No 158
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=35.31 E-value=31 Score=14.80 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCC--CCCCCEEEEECCCCHHHH--HHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 9999999999838--887621410078646898--88799997418564301210236369789999986411102
Q gi|254780410|r 63 LAIFLICAWEQHG--FPSCVRLVELGPGRGIMM--LDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 63 ia~~~~~~~~~~~--~p~~~~ivE~GaG~G~La--~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
+.+.+.+.+.-.. .+..-+++++|.|.|-=. ..|+ .|+ .++++||++..-....++...+++
T Consensus 31 ~~rHi~DSl~~~~~~~~~~~~ilDiGSGaGfPGi~LAI~------~p~----~~~~LvEs~~KK~~FL~~v~~~L~ 96 (184)
T pfam02527 31 LERHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIA------FPD----KKLTLLESLLKKINFLEELKKELN 96 (184)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH------CCC----CEEEEEECHHHHHHHHHHHHHHCC
T ss_conf 999999999987742667986883479888467999996------778----559999282899999999999859
No 159
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=35.04 E-value=4.2 Score=20.75 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=15.8
Q ss_pred EEE-EEECCCCCCCCCC-------------C--EEEEECCCCCC
Q ss_conf 059-9962433685888-------------8--07764057676
Q gi|254780410|r 234 GTA-IVIDYGYLQSRVG-------------D--TLQAVKGHTYV 261 (362)
Q Consensus 234 G~~-L~iDYGy~~~r~~-------------g--TLr~y~~H~~~ 261 (362)
|.+ |+=|||++|..-. + -+.-|+-|+++
T Consensus 355 g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k~~r~v~~FQPHrYs 398 (491)
T TIGR01082 355 GTVLLIDDYAHHPTEIKATLAAARQVYPDKNRRIVVVFQPHRYS 398 (491)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 27999965899978999999999875211795799997498567
No 160
>cd01718 Sm_E The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit E binds subunits F and G to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=34.15 E-value=6.3 Score=19.58 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHCCCCCCCCCC---CCCCCC---CCCEEE
Q ss_conf 049999998710898786468---988888---888645
Q gi|254780410|r 19 MTVDQYFALCVADPEFGYYST---CNPFGA---VGDFVT 51 (362)
Q Consensus 19 i~f~~fM~~aLy~p~~GYY~~---~~~~G~---~GDF~T 51 (362)
+.|++||.+.|-|-+ -|+.+ +.++|+ +||=+|
T Consensus 38 ~GFDeyMNlVLdda~-Ev~~k~~~~~~lG~ILLkGdNIt 75 (79)
T cd01718 38 IGFDEYMNLVLDDAE-EVHLKTKTRKPLGRILLKGDNIT 75 (79)
T ss_pred EEEHHEEEEEEEEEE-EEECCCCCCEECCEEEECCCEEE
T ss_conf 961232136770259-98637785109536999376499
No 161
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=34.02 E-value=33 Score=14.66 Aligned_cols=263 Identities=13% Similarity=0.174 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC--CCC--CCCCCC-CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999981898049999998710898786--468--988888-8886457671179999999999999998388876
Q gi|254780410|r 5 LIRKIVNLIKKNGQMTVDQYFALCVADPEFGY--YST--CNPFGA-VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSC 79 (362)
Q Consensus 5 L~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GY--Y~~--~~~~G~-~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~ 79 (362)
-.+++.+.+..-|.+...+|....+---.-.| -.+ ....|+ .|+|+|..+++.+.+++. + .+..+-
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~gd~~~~~~~~~~~~~g~~gg~~~~p~~~~~~~~~~~----~-----~~~~~~ 224 (516)
T TIGR00497 154 RTEKLKELLEAIGGLELGDFLKNGIDAFGDAYEFLLALYASNAGKSGGEFFTPQDVSELLAKIA----L-----GGKDTV 224 (516)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----C-----CCCCHH
T ss_conf 6888999987513300012433010010047899999875204656665446255898988764----0-----452002
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCC
Q ss_conf 21410078646898887999974185643012102363697899999864111023101104344445695699981228
Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFF 159 (362)
Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~l 159 (362)
-.+.+...|+|.|...+.+.+.+.. .....|+--|.+..--...+-.+-- +.+.+ ....++-+.-+.
T Consensus 225 ~~~~d~~cg~g~~~~~~~~~~g~~~---~~~~~~~g~~~~~~~~~~c~~~~~~--~~~~~--------~~~~~~~~d~~~ 291 (516)
T TIGR00497 225 DDVYDPCCGSGSLLLQFSKVLGKDK---NSLKGYFGQEINLTTYNLCRLNLFL--HDIDY--------ANFNIANGDTLL 291 (516)
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCCH---HHHHHHCCCHHCCHHHHHHHHHHHH--HHCCC--------CCCEECCCCCCC
T ss_conf 3444310475136778787732310---1122220210011034455554555--31230--------010000231003
Q ss_pred CCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCC--------CCCCCC-CCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 87523589991566468998996079535225764343223--------463316-568411279347899999999762
Q gi|254780410|r 160 DSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNF--------LTCSDY-FLGAIFENSPCRDREMQSISDRLA 230 (362)
Q Consensus 160 DAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~g~~~E~~~~~~~~~~~i~~~l~ 230 (362)
| ..|...+|....++.+......++....| .....+ +.|....-+..-..+.......+.
T Consensus 292 ~-----------~~~~~~~~~c~~~~~~~~~~~~pp~~~~w~gd~~~~~~~d~~~~~~g~~~p~~~~d~~~~~~~~~~~~ 360 (516)
T TIGR00497 292 D-----------PEWEKHYVNCSDDEGFDAVVSNPPYSTKWAGDKNPNLVNDERFKPAGTLAPNNKADLAFTLHALYYLG 360 (516)
T ss_pred C-----------CHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6-----------20121001246777732455378742000466544200101025332226551135888888988732
Q ss_pred HCCEEEEEECCC---CCCCCCCCEEEEECCCC-CCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEE-HHHHH
Q ss_conf 057059996243---36858888077640576-767-00010003453126889999999968983633233-89999
Q gi|254780410|r 231 CDGGTAIVIDYG---YLQSRVGDTLQAVKGHT-YVS-PLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTT-QGKFL 302 (362)
Q Consensus 231 ~~~G~~L~iDYG---y~~~r~~gTLr~y~~H~-~~d-pl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~s-Q~~FL 302 (362)
+.|...++.+- |.. ....++|-|--.+ ..| .+.-|.+.-.+..+--..+.-.-.+..-....++. ..+|.
T Consensus 361 -~~g~~~~~~~pg~~~~~-~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 436 (516)
T TIGR00497 361 -NEGTAAIVCFPGVLYRG-GKEAKIREYLVDENFVDCVIALPDNLFFGTSIATCILVLKKNKDKDDPTLFIDGSNEFV 436 (516)
T ss_pred -CCCCEEEEECCCHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf -56642322214211037-50356887764201345554301001101245554433212567556357861623444
No 162
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase; InterPro: IPR000191 Formamidopyrimidine-DNA glycosylase (3.2.2.23 from EC) (Fapy-DNA glycosylase) (gene fpg) is a bacterial enzyme involved in DNA repair and which excise oxidized purine bases to release 2,6-diamino-4-hydroxy-5N-methylformamido- pyrimidine (Fapy) and 7,8-dihydro-8-oxoguanine (8-OxoG) residues. In addition to its glycosylase activity, FPG can also nick DNA at apurinic/apyrimidinic sites (AP sites). FPG is a monomeric protein of about 32 Kd which binds and require zinc for its activity. The C-terminal region is the zinc binding site in the enzyme where four conserved and essential cysteines are located ..
Probab=33.68 E-value=32 Score=14.70 Aligned_cols=69 Identities=17% Similarity=0.042 Sum_probs=48.8
Q ss_pred CCEEEEEECCC----CCCCCCCC--EEEEECCCCCCC--CCCCCCCCCC-CCCCCHHHHHHHHHHCCCEEECCEEHHHHH
Q ss_conf 57059996243----36858888--077640576767--0001000345-312688999999996898363323389999
Q gi|254780410|r 232 DGGTAIVIDYG----YLQSRVGD--TLQAVKGHTYVS--PLVNPGQADL-SSHVDFQRLSSIAILYKLYINGLTTQGKFL 302 (362)
Q Consensus 232 ~~G~~L~iDYG----y~~~r~~g--TLr~y~~H~~~d--pl~~pG~~DI-TahVnFs~L~~~a~~~g~~~~g~~sQ~~FL 302 (362)
+.=+.+.+|=| |...|.=| |+.-+.+-+..+ ++...|--=+ +..=|...|.+...+..= .=+.||
T Consensus 101 H~hv~~~f~dG~~L~y~D~R~FG~~~~~l~~~~~~~~~~~l~~LGpEPly~~~F~~~~l~~~l~~~~r------~~K~~L 174 (292)
T TIGR00577 101 HVHVDFLFDDGTELRYHDPRKFGKVTWLLLDRGEVEASLLLAKLGPEPLYSEDFTAEYLFEKLAKSKR------KIKTAL 174 (292)
T ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHCCC------HHHHHH
T ss_conf 65699998699678875576355689871677530120136672888886521173899999874040------345686
Q ss_pred HHCC
Q ss_conf 9789
Q gi|254780410|r 303 EGLG 306 (362)
Q Consensus 303 ~~~G 306 (362)
++..
T Consensus 175 LDQ~ 178 (292)
T TIGR00577 175 LDQR 178 (292)
T ss_pred HCCC
T ss_conf 5487
No 163
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=33.20 E-value=34 Score=14.57 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 762141007864689888799997418564301210236369789999986411
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
.+..++++|.|.|.-+.=+.. . -.+...++.|+.....-++.-.
T Consensus 30 ~~g~~LDlgcG~Grna~~La~----~------G~~VtavD~s~~al~~~~~~a~ 73 (198)
T PRK11207 30 KPGRTLDLGCGNGRNSLYLAA----N------GYDVTAWDKNPMSIANLERIKA 73 (198)
T ss_pred CCCCEEEECCCCCHHHHHHHH----C------CCEEEEEECCHHHHHHHHHHHH
T ss_conf 997477724788786999986----8------9859999799999999999998
No 164
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=32.47 E-value=22 Score=15.81 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCEEEC
Q ss_conf 8049999998710898786468988888-8886457
Q gi|254780410|r 18 QMTVDQYFALCVADPEFGYYSTCNPFGA-VGDFVTA 52 (362)
Q Consensus 18 ~i~f~~fM~~aLy~p~~GYY~~~~~~G~-~GDF~Ts 52 (362)
||||.+-|+++|.+ |.+++..||- +-.||++
T Consensus 7 p~pf~~l~~~~~~e----~~~~~sifgi~~~~fy~~ 38 (1032)
T PRK09853 7 PIPFEELLTRIFDE----YQQQRSIFGIPEQQFYSP 38 (1032)
T ss_pred CCCHHHHHHHHHHH----HHHCCCEECCCHHHCEEC
T ss_conf 56699999999998----861596306647763207
No 165
>PRK10137 predicted glycosyl hydrolase; Provisional
Probab=31.67 E-value=36 Score=14.41 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=16.4
Q ss_pred EEHHHHHH-HCCHHHHHHHHHHCCCCHHHH---HHHHHHHHHC
Q ss_conf 33899999-789799999987084627999---9999998614
Q gi|254780410|r 296 TTQGKFLE-GLGIWQRAFSLMKQTARKDIL---LDSVKRLVST 334 (362)
Q Consensus 296 ~sQ~~FL~-~~GI~~r~~~l~~~~~~~~~~---~~~~~rli~~ 334 (362)
+.|..||- ..+++..+..++...+..... +..++..|..
T Consensus 573 VDlnsYly~e~~~La~mA~~Lg~~~~A~~~~~~A~~l~~yI~~ 615 (781)
T PRK10137 573 VDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINT 615 (781)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5489999998889999999849866699999999999999987
No 166
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=31.53 E-value=23 Score=15.71 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=10.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 1410078646898887999974
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICK 102 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~ 102 (362)
+||=+|+|+ -|.|..|+..+
T Consensus 668 ~VVVIGGGN--TAMDcARTAlR 687 (1012)
T TIGR03315 668 HVVVVGGGN--TAMDAARAALR 687 (1012)
T ss_pred EEEEECCCH--HHHHHHHHHHH
T ss_conf 589989847--99999999875
No 167
>PRK13439 consensus
Probab=31.18 E-value=36 Score=14.35 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=50.6
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEE---EEECCHHH
Q ss_conf 8645767117999999999999999838887--621410078646898887999974185643012102---36369789
Q gi|254780410|r 48 DFVTAPEISQIFGEMLAIFLICAWEQHGFPS--CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIY---MVETSERL 122 (362)
Q Consensus 48 DF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~--~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~---ivE~s~~l 122 (362)
.|..||.+++--=.-+ +.......-.|. +|--+=+.-|+..+..+|++.+....-+........ ..+.|+..
T Consensus 47 ~~l~sp~i~~~~K~~i---l~~i~~~~~~~~~~nfl~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q 123 (180)
T PRK13439 47 DAMSSPVLEVEAKKKA---LIKLFSEQVTPSLLNLLKLLADRQRIGALDAVLERFLELYREQRNIALATVTSAVELTEDQ 123 (180)
T ss_pred HHHHCCCCCHHHHHHH---HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHH
T ss_conf 9985879899999999---9999844168999999999987885637999999999999841797999999757999999
Q ss_pred HHHHHHHHHH-CC-CCHHCCCCHH-HCCCCCEEEEEECCCCC
Q ss_conf 9999864111-02-3101104344-44569569998122887
Q gi|254780410|r 123 TLIQKKQLAS-YG-DKINWYTSLA-DVPLGFTFLVANEFFDS 161 (362)
Q Consensus 123 ~~~Q~~~l~~-~~-~~v~w~~~l~-~~~~~~~iiiaNE~lDA 161 (362)
++.-.+.+.. .+ .+|.+....+ ++--|..+-+.|.++|+
T Consensus 124 ~~~l~~~l~~~~g~~~v~l~~~vDpsLIGG~~i~ig~~viD~ 165 (180)
T PRK13439 124 QAALTKKVQSIAGTDKLEIDLKVDPSLIGGFVVSVGSKVIDA 165 (180)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHCEEEEEECCEEEEH
T ss_conf 999999999985898600355577122070799999998757
No 168
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=30.82 E-value=33 Score=14.60 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.5
Q ss_pred CCCCCCEEEEECCCCHHHHHHH
Q ss_conf 8887621410078646898887
Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDI 96 (362)
Q Consensus 75 ~~p~~~~ivE~GaG~G~La~di 96 (362)
..|.+..|.++|.|++.||..+
T Consensus 64 ~~p~~~vIaD~GCGdA~lA~~~ 85 (214)
T pfam05148 64 RRPGNGVIADLGCGEARIAFRK 85 (214)
T ss_pred HCCCCEEEEECCCCHHHHHHHC
T ss_conf 4899718997588657999864
No 169
>KOG3178 consensus
Probab=30.76 E-value=37 Score=14.31 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCC-CCCCEEECCC-CCHHHHHHHHHHHHHHHH-----HC-CCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 888-8888645767-117999999999999999-----83-8887621410078646898887999
Q gi|254780410|r 42 PFG-AVGDFVTAPE-ISQIFGEMLAIFLICAWE-----QH-GFPSCVRLVELGPGRGIMMLDILRV 99 (362)
Q Consensus 42 ~~G-~~GDF~Tsp~-is~~Fg~~ia~~~~~~~~-----~~-~~p~~~~ivE~GaG~G~La~diL~~ 99 (362)
.-| .-|.|+++-+ .++.|-+... .+-.++. .. |...--..|.+|+|-|+.++.++..
T Consensus 134 ~~G~~l~~~~~~~~~~~~~~~~sm~-~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~ 198 (342)
T KOG3178 134 AHGMMLGGYGGADERFSKDFNGSMS-FLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSK 198 (342)
T ss_pred CCCHHHHHHCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 4433133011455223789999988-8878888864201026556766887587476999999975
No 170
>PTZ00146 fibrillarin; Provisional
Probab=30.70 E-value=37 Score=14.30 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 569998122887523589991566468998996
Q gi|254780410|r 150 FTFLVANEFFDSLPIKQFVMTEHGIRERMIDID 182 (362)
Q Consensus 150 ~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~ 182 (362)
+++++|.-==|+|-.+-.+-.+.-+-|+.|.++
T Consensus 68 ~gvf~~~gk~d~l~T~n~vpg~svYgEkri~~~ 100 (296)
T PTZ00146 68 PGVFIAKGKSDALVTKNMVPGESVYGEKRISGT 100 (296)
T ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCEEEEEE
T ss_conf 625886066000465057777542461488873
No 171
>TIGR02688 TIGR02688 conserved hypothetical protein TIGR02688; InterPro: IPR014061 Members of this entry are uncharacterised proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families IPR004815 from INTERPRO (ATP-dependent protease La) or IPR003111 from INTERPRO (ATP-dependent protease La (LON) domain). The proteins in this entry are encoded by genes repeatedly found downstream of another gene that encodes an uncharacterised protein of about 880 amino acids in length (see IPR014060 from INTERPRO)..
Probab=30.29 E-value=21 Score=15.94 Aligned_cols=63 Identities=22% Similarity=0.444 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE---------EECCCCCH-HHH-H-----HHHHHHHHHHHHCCCCCCC
Q ss_conf 980499999987108987864689888888886---------45767117-999-9-----9999999999983888762
Q gi|254780410|r 17 GQMTVDQYFALCVADPEFGYYSTCNPFGAVGDF---------VTAPEISQ-IFG-E-----MLAIFLICAWEQHGFPSCV 80 (362)
Q Consensus 17 G~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF---------~Tsp~is~-~Fg-~-----~ia~~~~~~~~~~~~p~~~ 80 (362)
+|+...+|==+=+++=+.++|.-+.+ .| ++|....| .|+ . +|+| ++.+ .-.+.
T Consensus 150 ~~~~i~~fkP~Q~~~~Dl~~~~EgR~-----~FT~eEWidvLi~siG~~P~~f~s~~~kL~~L~R-L~pL-----vE~N~ 218 (470)
T TIGR02688 150 SPVIISSFKPIQASEVDLDLYKEGRK-----EFTLEEWIDVLIRSIGYEPEAFESARQKLLLLAR-LVPL-----VEKNY 218 (470)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHH-----CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HHHH-----HCCCC
T ss_conf 87788405767675579789988640-----6787899999998522486535657889999987-7875-----42871
Q ss_pred EEEEECC-CCH
Q ss_conf 1410078-646
Q gi|254780410|r 81 RLVELGP-GRG 90 (362)
Q Consensus 81 ~ivE~Ga-G~G 90 (362)
|+||+|| |+|
T Consensus 219 Nl~ELgPk~TG 229 (470)
T TIGR02688 219 NLVELGPKGTG 229 (470)
T ss_pred CEEEECCCCCC
T ss_conf 34875788877
No 172
>PTZ00299 homoserine kinase; Provisional
Probab=30.17 E-value=38 Score=14.24 Aligned_cols=20 Identities=15% Similarity=-0.087 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHCCCEEECCE
Q ss_conf 88999999996898363323
Q gi|254780410|r 277 DFQRLSSIAILYKLYINGLT 296 (362)
Q Consensus 277 nFs~L~~~a~~~g~~~~g~~ 296 (362)
.|..+++++.++|.--.+..
T Consensus 243 ~~~~v~~~a~~aGA~g~~iS 262 (336)
T PTZ00299 243 HFRPCVKAAREAGAHYAFLS 262 (336)
T ss_pred CHHHHHHHHHHCCCEEEEEE
T ss_conf 79999999987899499997
No 173
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=29.09 E-value=39 Score=14.12 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHH---HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 999999999999---8388876214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 61 EMLAIFLICAWE---QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 61 ~~ia~~~~~~~~---~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
+++.+.+++.+. ........+++++|.|-|-=..=+ .. ..|+ .+++++|++..-....++....+
T Consensus 49 ~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGfPGipl-AI---~~p~----~~~~Lves~~KK~~FL~~~~~~L 116 (216)
T PRK00107 49 EMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGFPGIPL-AI---ARPD----LQVTLVDSLGKKIAFLRQVAAEL 116 (216)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHH-HH---HCCC----CCEEEECHHHHHHHHHHHHHHHC
T ss_conf 999998885788987337665877997079999426789-99---7787----72999738769999999999976
No 174
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=28.69 E-value=3.5 Score=21.29 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 5705999624336858888077640---57676700010003453126889999
Q gi|254780410|r 232 DGGTAIVIDYGYLQSRVGDTLQAVK---GHTYVSPLVNPGQADLSSHVDFQRLS 282 (362)
Q Consensus 232 ~~G~~L~iDYGy~~~r~~gTLr~y~---~H~~~dpl~~pG~~DITahVnFs~L~ 282 (362)
.+|..+++||++++.-...+|.+.+ +.+..=.|-.+|..|.+.+-.+..+.
T Consensus 11 ~~~~~vi~DyaHnp~~~~a~l~~~~~~~~~r~i~V~G~~g~r~~~~r~~~g~~a 64 (87)
T pfam02875 11 NNGVLVIDDYAHNPDALEAALQALKELFDGRLILVFGAGGDRDAEFHALLGALA 64 (87)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 899789996789969999999999862688789999998888678999999999
No 175
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=27.92 E-value=28 Score=15.17 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=33.0
Q ss_pred CHHHHHHHHHCCCCCCCCCCCC----CCCCCCCEEECCCCCHHH-------HHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 4999999871089878646898----888888864576711799-------99999999999998388876214100786
Q gi|254780410|r 20 TVDQYFALCVADPEFGYYSTCN----PFGAVGDFVTAPEISQIF-------GEMLAIFLICAWEQHGFPSCVRLVELGPG 88 (362)
Q Consensus 20 ~f~~fM~~aLy~p~~GYY~~~~----~~G~~GDF~Tsp~is~~F-------g~~ia~~~~~~~~~~~~p~~~~ivE~GaG 88 (362)
++.-....-|-++..+-|...+ .+|. | |.| |..+|||+...=+- =..-.|+|+|+|
T Consensus 23 p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~-------p---Ppfwa~~WagG~~lAR~i~~~Pet---VrgkrVLd~gag 89 (218)
T COG3897 23 PHVPEIRLHLADEAHELWDRAKEELRLIGL-------P---PPFWAFAWAGGQVLARYIDDHPET---VRGKRVLDLGAG 89 (218)
T ss_pred CCCCHHHEEECCCCCCHHHHHHHHHHHCCC-------C---CHHHHHHHHHHHHHHHHHHCCCCC---CCCCEEEECCCC
T ss_conf 998534012200254207676788874379-------9---548999875027787787608631---036532441566
Q ss_pred CHHHH
Q ss_conf 46898
Q gi|254780410|r 89 RGIMM 93 (362)
Q Consensus 89 ~G~La 93 (362)
+|--+
T Consensus 90 sgLva 94 (218)
T COG3897 90 SGLVA 94 (218)
T ss_pred CCHHH
T ss_conf 67088
No 176
>KOG2915 consensus
Probab=27.91 E-value=41 Score=13.98 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=35.6
Q ss_pred HHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 998388-876214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 71 WEQHGF-PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 71 ~~~~~~-p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
...+.. |.. .|+|-|-|+|.|--.|.+.+.-. -+.+-.|....+.+.-.+-+.++
T Consensus 98 ~~~L~i~PGs-vV~EsGTGSGSlShaiaraV~pt-------Ghl~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915 98 LSMLEIRPGS-VVLESGTGSGSLSHAIARAVAPT-------GHLYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred HHHHCCCCCC-EEEECCCCCCHHHHHHHHHHCCC-------CCEEEEEECHHHHHHHHHHHHHH
T ss_conf 9986579997-89863788634889999863767-------62699983287899999999973
No 177
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=26.93 E-value=43 Score=13.87 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=25.8
Q ss_pred ECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 078646898887999974185643012102363697899999864111023
Q gi|254780410|r 85 LGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD 135 (362)
Q Consensus 85 ~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~ 135 (362)
-|+|.||=|+-|.+. ..|+-+=.-.=||+.+++.=++++.
T Consensus 8 PGSGKGTQCa~Iv~~-----------f~~~HLSAGDLLR~E~~R~GSe~g~ 47 (189)
T TIGR01359 8 PGSGKGTQCAKIVEN-----------FGYVHLSAGDLLRAEIKREGSENGE 47 (189)
T ss_pred CCCCHHHHHHHHHHH-----------CCCEEECHHHHHHHHHHHCCCCCCC
T ss_conf 898756789999985-----------3946880747889986104788850
No 178
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=26.93 E-value=43 Score=13.87 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=33.6
Q ss_pred CCCC-CCCCCCC---CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE--EECCCCHHHHHHHHHHHH
Q ss_conf 8646-8988888---88864576711799999999999999983888762141--007864689888799997
Q gi|254780410|r 35 GYYS-TCNPFGA---VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLV--ELGPGRGIMMLDILRVIC 101 (362)
Q Consensus 35 GYY~-~~~~~G~---~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~iv--E~GaG~G~La~diL~~l~ 101 (362)
.||. +++||.. ...||.|+..... +++-...+ .....+.+| |.|.|.=+|++.+++.+.
T Consensus 4 ~~fgl~~~PF~~~pd~~~~y~s~~h~~a----l~~L~~~l----~~~~g~~lltGe~GtGKTtllr~l~~~l~ 68 (269)
T TIGR03015 4 AFFGFTTKPFQLLPDPDFFYPSKGHKRA----MAYLEYGL----SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHCCCCCCCCCCCCCHHHCCCCHHHHHH----HHHHHHHH----HCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7649998999999984541478669999----99999999----64896599972998988999999998459
No 179
>pfam05209 MinC_N Septum formation inhibitor MinC, N-terminal domain. In Escherichia coli ftsZ assembles into a Z ring at midcell while assembly at polar sites is prevented by the min system. MinC, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with MinDE. MinC is an oligomer, probably a dimer. The C terminal half of MinC is the most conserved and interacts with MinD. The N terminal half is thought to interact with FtsZ.
Probab=26.76 E-value=43 Score=13.85 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHCCCEEECCEEHHHHHHHCC
Q ss_conf 126889999999968983633233899999789
Q gi|254780410|r 274 SHVDFQRLSSIAILYKLYINGLTTQGKFLEGLG 306 (362)
Q Consensus 274 ahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~G 306 (362)
..+||.+|+...+++|+..+|..--++=.+..|
T Consensus 53 ~~~d~~~L~~~l~~~gl~~VGV~G~~~~~~~ag 85 (95)
T pfam05209 53 ENVDLKALKSLCSRHGLRILGVSGCKEEAMQSG 85 (95)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCHHHHHHCC
T ss_conf 876999999999987998999857779999729
No 180
>TIGR02763 chlamy_scaf scaffolding protein; InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Chp2. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein..
Probab=26.66 E-value=14 Score=17.28 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=15.7
Q ss_pred EEEEEECCCCCCCEEEEEEECC
Q ss_conf 6999812288752358999156
Q gi|254780410|r 151 TFLVANEFFDSLPIKQFVMTEH 172 (362)
Q Consensus 151 ~iiiaNE~lDAlPv~~~~~~~~ 172 (362)
.||=+.|.|||||.++=+.-+|
T Consensus 43 ~vie~~E~FdsLPAkvR~~FgN 64 (127)
T TIGR02763 43 VVIEAEEAFDSLPAKVRERFGN 64 (127)
T ss_pred HHHHHHHHCCCCCCCCCCCCCC
T ss_conf 7533210001276321126888
No 181
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=26.17 E-value=44 Score=13.77 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 67117999999999999999838-88762141007864689888799997418564301210236369789999986411
Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHG-FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362)
Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~-~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362)
.|..+.|+-++.. +.+...... ..++..|+=-|||-|.||.+|... . ....-.|-|-.+--.-+=.|.
T Consensus 32 ~ER~~~~~pI~~~-L~~~~p~~~~~~~~~~VLVPGaGLGRLa~Eia~~------G----~~~~gNE~S~~Mllas~fiLn 100 (268)
T pfam07942 32 VERDPLYKPIIEE-LNRLFPSRSHDRSKIRILVPGAGLGRLAYELATL------G----YQVQGNEFSYFMLLCSNFILN 100 (268)
T ss_pred HHHHHHHHHHHHH-HHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHC------C----CEEEEECCCHHHHHHHHHHHH
T ss_conf 9999889999999-9986798756777828997698803789998725------6----468872121999999999985
Q ss_pred HC----CCC----HHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCC
Q ss_conf 10----231----0110434444569569998122887523589991566468998996079535225764343223463
Q gi|254780410|r 132 SY----GDK----INWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTC 203 (362)
Q Consensus 132 ~~----~~~----v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~ 203 (362)
.. ... |.|+++.....+ -+-+=.+=|.-|.......++ ..+. .+.|.....+.. ..+
T Consensus 101 ~~~~~~~~~i~Pfi~~~Sn~~~~~d---qlr~v~iPDv~p~~~~~~~~~------~sm~-aGDF~e~y~~~~--~~~--- 165 (268)
T pfam07942 101 YCKEENQITIYPFIHSFSNQLTRDD---QLRPVQIPDVHPLSELGPRGN------FSMC-AGDFLEVYGEDA--NSY--- 165 (268)
T ss_pred CCCCCCCEEEECCCCCCCCCCCHHH---CEEEEECCCCCCCCCCCCCCC------EEEE-EEEEEEECCCCC--CCC---
T ss_conf 2587782899632536668789889---755576588681014799984------1487-003589838887--822---
Q ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECCC---CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 316568411279347899999999762057059996243---36858888077640576767000100034531268899
Q gi|254780410|r 204 SDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYG---YLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQR 280 (362)
Q Consensus 204 ~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYG---y~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~ 280 (362)
.-...-+.+...+..-.+++.|.+.|+. +| +.|--| |+-. +..+ ..+-....+.
T Consensus 166 d~VvT~FFIDTA~Ni~~Yi~tI~~lLkp-gG--~WIN~GPLlyh~~----------------~~~~----~~siELs~eE 222 (268)
T pfam07942 166 DVVVTCFFIDTAHNVLEYIDTIEKILKP-GG--HWINLGPLLYHFE----------------PLPD----EMSIELSLED 222 (268)
T ss_pred CEEEEEEEEECHHHHHHHHHHHHHHHCC-CC--EEEECCCCCCCCC----------------CCCC----CCCEECCHHH
T ss_conf 6899998766468899999999998366-98--8996467012457----------------7788----7600068999
Q ss_pred HHHHHHHCCCEEECC
Q ss_conf 999999689836332
Q gi|254780410|r 281 LSSIAILYKLYINGL 295 (362)
Q Consensus 281 L~~~a~~~g~~~~g~ 295 (362)
|....++.|++...-
T Consensus 223 i~~l~~~~GF~~~~~ 237 (268)
T pfam07942 223 IKRLATKRGFKDEKE 237 (268)
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999998569779988
No 182
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.09 E-value=37 Score=14.29 Aligned_cols=57 Identities=19% Similarity=0.067 Sum_probs=38.2
Q ss_pred CCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHHHHC
Q ss_conf 36858888077640576-7670001000345312688999999996898363323389999978
Q gi|254780410|r 243 YLQSRVGDTLQAVKGHT-YVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGL 305 (362)
Q Consensus 243 y~~~r~~gTLr~y~~H~-~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~ 305 (362)
|...|.-|+..-+.... ...++...|--=++...|-..+.+...+..-. =+.||++.
T Consensus 108 y~D~R~FG~~~~~~~~~~~~~~l~~LGpePl~~~f~~~~l~~~l~~~~~~------IK~~LLDQ 165 (273)
T COG0266 108 YNDPRRFGTMLLIEDLEEVHPVLAKLGPEPLSDDFDPEYLAEKLAKKKRR------IKTALLDQ 165 (273)
T ss_pred EECCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC------HHHHHHCC
T ss_conf 86387674899945665432779865999885436999999987327641------67776407
No 183
>PRK12473 hypothetical protein; Provisional
Probab=26.00 E-value=44 Score=13.76 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCC--HHHHH-------CCCEEEEECCHHHHHHHHHHHHHC--CCCHHCCCCHH
Q ss_conf 88762141007864689888799997418--56430-------121023636978999998641110--23101104344
Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLK--PDFFS-------VLSIYMVETSERLTLIQKKQLASY--GDKINWYTSLA 144 (362)
Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~--p~~~~-------~l~~~ivE~s~~l~~~Q~~~l~~~--~~~v~w~~~l~ 144 (362)
.|++- ++=+| +-.=...|.+.-+..- .+.|. .-+..+...|-.-.-.-++.|.+. .+...-+++|+
T Consensus 28 epANG-vli~G--dE~~~~~Iid~yK~~~ke~e~f~vK~g~~~~~kVLim~ksTAe~miK~~l~Rk~D~~~~~~pidsLP 104 (193)
T PRK12473 28 EKANG-FVLYG--DEEQVQQIMDKYKDEVKSKDFYKMKMGTLEGKKVLVMDKTTAEKMVKKELLKKVDVKDDTKPLDKLP 104 (193)
T ss_pred CCCCE-EEEEE--CHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCEEEEEECHHHHHHHHHHHHEECCCCCCCEEHHHCC
T ss_conf 89877-99996--5688899999877765330026789866778179998318999998722411303688850801056
Q ss_pred HCCCCCEEEEEECCCCCC
Q ss_conf 445695699981228875
Q gi|254780410|r 145 DVPLGFTFLVANEFFDSL 162 (362)
Q Consensus 145 ~~~~~~~iiiaNE~lDAl 162 (362)
.+|.+.+++||||=.-.+
T Consensus 105 ~v~ke~~lLFA~e~~k~i 122 (193)
T PRK12473 105 AITTEQGILFAKEEVKNA 122 (193)
T ss_pred CCCCCCEEEEECCCHHCE
T ss_conf 888876358732511120
No 184
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor; InterPro: IPR012781 Members of this family belong the lacI helix-turn-helix family of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterised members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.; GO: 0003677 DNA binding, 0006355 regulation of transcription DNA-dependent, 0009750 response to fructose stimulus, 0045449 regulation of transcription.
Probab=25.93 E-value=18 Score=16.46 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=10.8
Q ss_pred EEECCCCCH-HHHHHHHHHHHHHHHHCC
Q ss_conf 645767117-999999999999999838
Q gi|254780410|r 49 FVTAPEISQ-IFGEMLAIFLICAWEQHG 75 (362)
Q Consensus 49 F~Tsp~is~-~Fg~~ia~~~~~~~~~~~ 75 (362)
||= |++.- -|+ ++|+.+.+.-++.|
T Consensus 65 lvi-PDLeN~syA-r~Ak~LE~~~R~~G 90 (335)
T TIGR02417 65 LVI-PDLENYSYA-RIAKLLEQQAREAG 90 (335)
T ss_pred EEE-CCCCCCCHH-HHHHHHHHHHHHCC
T ss_conf 771-586576189-99999999877617
No 185
>KOG2960 consensus
Probab=25.72 E-value=45 Score=13.72 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCCCEEECCCCCHHHHHHHH-HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH
Q ss_conf 88886457671179999999-99999999838887621410078646898887999974185643012102363697899
Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLA-IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362)
Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia-~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362)
.+.||--+|---+.-.+... |++-++.+.. .-.+|=.|||+.-|..... +.+..|+ +++.|+|.|
T Consensus 45 d~s~F~FaPIrEStVSRaMTrRYf~DldkyA----esDvviVGAGSaGLsAAY~--I~~~rPd----lkvaIIE~S---- 110 (328)
T KOG2960 45 DWSDFKFAPIRESTVSRAMTRRYFKDLDKYA----ESDVVIVGAGSAGLSAAYV--IAKNRPD----LKVAIIESS---- 110 (328)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----CCCEEEECCCCCCCCEEEE--EECCCCC----CEEEEEEEE----
T ss_conf 3212400430577788999999987777651----0456998778665414666--3036998----469999700----
Q ss_pred HHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCC--CEEEEEEEEECCCEE
Q ss_conf 99986411102310110434444569569998122887523589991566--468998996079535
Q gi|254780410|r 124 LIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHG--IRERMIDIDQHDSLV 188 (362)
Q Consensus 124 ~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~--w~E~~V~~~~~~~~~ 188 (362)
+..+.+--++-.+|-||-++ +..- +.|+.|-+++.+..+
T Consensus 111 ----------------------VaPGGGaWLGGQLFSAMvvR----KPAhLFL~EigvpYedegdYV 151 (328)
T KOG2960 111 ----------------------VAPGGGAWLGGQLFSAMVVR----KPAHLFLQEIGVPYEDEGDYV 151 (328)
T ss_pred ----------------------ECCCCCCCCCCHHHHHHHHC----CHHHHHHHHHCCCCCCCCCEE
T ss_conf ----------------------36997434010154565424----728888887389734678779
No 186
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=25.62 E-value=45 Score=13.71 Aligned_cols=188 Identities=16% Similarity=0.211 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEEC
Q ss_conf 76214100786468988879999741856430121023636978999998641110231011043444456956999812
Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANE 157 (362)
Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE 157 (362)
.+..|+++|-|+| .|+.++... .+-.|+-+++|+.-.+.-++|......+.+- ......-...++.+
T Consensus 63 ~~~~VLDl~CGkG---GDL~Kw~~~------~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~--~~~~~~f~~~f~~~-- 129 (327)
T pfam03291 63 PKRKVLDLDCGKG---GDLEKYFKG------GISGLIGTDIAEVSIEQAQERYNDLNSRSKS--KYYKFDFIAEFITG-- 129 (327)
T ss_pred CCCEEEEECCCCC---CCHHHHHHC------CCCEEEEECCCHHHHHHHHHHHHHHHHCCCC--CCCCCCCCEEEEEC--
T ss_conf 8987998368664---457889747------9868999668999999999999986421144--44566750012315--
Q ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 28875235899915664689989960795352257643432234633165684112793478999999997620570599
Q gi|254780410|r 158 FFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAI 237 (362)
Q Consensus 158 ~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L 237 (362)
|++-. .+.+.+- +.... |+. ..+ .+.--|.+|-...+..+++.+++.|+. +|.++
T Consensus 130 --D~~~~--------~l~~~~~--~~~~~--FDv---------VS~-QFAiHY~Fese~~a~~~l~Nvs~~Lk~-GG~FI 184 (327)
T pfam03291 130 --DCFVS--------SVREVFE--PGQRK--FDI---------VSW-QFAIHYSFESEEKARTMLRNLAELLAS-GGKFI 184 (327)
T ss_pred --CCCHH--------HHHHHCC--CCCCC--CCE---------EEH-HHHHHHHHCCHHHHHHHHHHHHHHCCC-CCEEE
T ss_conf --62156--------7877535--77885--037---------751-787898764899999999999986058-98899
Q ss_pred EECC-CC------C-----CCCCCCEEEEECCCC--CCCCC--------CCCCCCCC-CCCCCHHHHHHHHHHCCCEEEC
Q ss_conf 9624-33------6-----858888077640576--76700--------01000345-3126889999999968983633
Q gi|254780410|r 238 VIDY-GY------L-----QSRVGDTLQAVKGHT--YVSPL--------VNPGQADL-SSHVDFQRLSSIAILYKLYING 294 (362)
Q Consensus 238 ~iDY-Gy------~-----~~r~~gTLr~y~~H~--~~dpl--------~~pG~~DI-TahVnFs~L~~~a~~~g~~~~g 294 (362)
.-=| |. . ....++++-.++-.. ...|| ++.. .|+ -+-|+|..|.+.+++.|++.+.
T Consensus 185 GT~~d~~~i~~~l~~~~~~~~~~gN~~y~i~f~~~~~~~~fG~~y~f~l~~~v-~~~~EYlV~~~~~~~l~~eygleLv~ 263 (327)
T pfam03291 185 GTTPDGDFIIKKLTATFVEHKSFGNSIYYVSFEKDPPRPPFGIKYVYNLEDMV-TDVPEYLVPFETLVELAEEYGLELVD 263 (327)
T ss_pred EEECCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC-CCCCEEECCHHHHHHHHHHCCCEEEE
T ss_conf 99667899999998603453205860389994688999999867999972117-88873136799999999985989999
Q ss_pred CEEHHHHHHH
Q ss_conf 2338999997
Q gi|254780410|r 295 LTTQGKFLEG 304 (362)
Q Consensus 295 ~~sQ~~FL~~ 304 (362)
..+=.+|...
T Consensus 264 ~~~F~e~~~~ 273 (327)
T pfam03291 264 KKTFHDIYNE 273 (327)
T ss_pred ECCHHHHHHH
T ss_conf 4687999998
No 187
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=25.19 E-value=41 Score=14.03 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=12.5
Q ss_pred ECCCCHHHHHHHHHH
Q ss_conf 078646898887999
Q gi|254780410|r 85 LGPGRGIMMLDILRV 99 (362)
Q Consensus 85 ~GaG~G~La~diL~~ 99 (362)
-|||.||+|..|.+.
T Consensus 9 pGaGK~T~A~~La~~ 23 (178)
T COG0563 9 PGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 999889999999997
No 188
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=24.97 E-value=21 Score=16.00 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=38.1
Q ss_pred HHHHHHHH--HCCEEEEEEC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEH
Q ss_conf 99999762--0570599962-4336858888077640576767000100034531268899999999689836332338
Q gi|254780410|r 223 QSISDRLA--CDGGTAIVID-YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQ 298 (362)
Q Consensus 223 ~~i~~~l~--~~~G~~L~iD-YGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ 298 (362)
++|.+.|+ +.+|++++=| |||...+.+-+-. .|=.++|...||-+-+ .+++....+.|..-+.-..|
T Consensus 198 ~~i~~~L~pvk~Kpf~VFHDAY~YFE~~ygl~~~---G~fTVsPev~PGA~rl------~~Ir~~l~e~~a~CvFaEPQ 267 (318)
T COG4531 198 KKVGEELAPVKGKPFFVFHDAYGYFENAYGLKPL---GHFTVSPEVQPGAKRL------AEIRTQLKEQKATCVFAEPQ 267 (318)
T ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCC---CEEEECCCCCCCHHHH------HHHHHHHHHHCCCEEECCCC
T ss_conf 9999871245789758984248888874076646---5277673447437899------99999999727967721898
No 189
>pfam03867 FTZ Fushi tarazu (FTZ), N-terminal region. This region contains the important motif (LXXLL) necessary for the interaction of FTZ with the nuclear receptor FTZ-F1. FTZ is thought to represents a category of LXXLL motif-dependent co-activators for nuclear receptors.
Probab=24.41 E-value=33 Score=14.64 Aligned_cols=10 Identities=0% Similarity=0.375 Sum_probs=5.0
Q ss_pred CCCCHHHHHH
Q ss_conf 1268899999
Q gi|254780410|r 274 SHVDFQRLSS 283 (362)
Q Consensus 274 ahVnFs~L~~ 283 (362)
.+-||+++.+
T Consensus 252 ndFnWSHIEE 261 (264)
T pfam03867 252 NDFNWSHIEE 261 (264)
T ss_pred CCCCHHHHHH
T ss_conf 6655566564
No 190
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=43 Score=13.85 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECC-C----EEECCCCCCCCCCCCCCCCC------------CCCC
Q ss_conf 69569998122887523589991566468998996079-5----35225764343223463316------------5684
Q gi|254780410|r 148 LGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHD-S----LVFNIGDHEIKSNFLTCSDY------------FLGA 210 (362)
Q Consensus 148 ~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~-~----~~~~~~~~~~~~~~~~~~~~------------~~g~ 210 (362)
.+..+.+++- +-..+.++.+++ ++.+.++..+ . +....+..+.+.......+. ..|.
T Consensus 104 ~G~~i~f~~~----l~a~v~e~~~~g--~~~l~F~~~~~~~l~e~L~~~G~~PLPPYI~~~~~~~d~~~YQTVYak~~Gs 177 (348)
T COG0809 104 AGDEIYFGDG----LKATVLERLEHG--LRLLEFDYEGIFSLLELLEKYGEMPLPPYIKRKLDELDRDRYQTVYAKEPGS 177 (348)
T ss_pred CCCEEEECCC----CEEEEEEECCCC--EEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCEEEEECCCCC
T ss_conf 8998994798----269999962885--2999994578505999999759989981338762212444324664258872
Q ss_pred EECCCHHHHHHHHHHHHHHHHCCE---EEEEECCC
Q ss_conf 112793478999999997620570---59996243
Q gi|254780410|r 211 IFENSPCRDREMQSISDRLACDGG---TAIVIDYG 242 (362)
Q Consensus 211 ~~E~~~~~~~~~~~i~~~l~~~~G---~~L~iDYG 242 (362)
++.+.+...+-.++.++|+. +| .+++.--|
T Consensus 178 -vAAPTAGLHFt~~LL~kLk~-kGv~~afvTLHVG 210 (348)
T COG0809 178 -VAAPTAGLHFTEELLEKLKA-KGVEIAFVTLHVG 210 (348)
T ss_pred -CCCCCCCCCCCHHHHHHHHH-CCCEEEEEEEEEC
T ss_conf -00476877789999999997-7953999999964
No 191
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=23.94 E-value=48 Score=13.50 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=55.0
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE--ECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH
Q ss_conf 8645767117999999999999999838887621410--07864689888799997418564301210236369789999
Q gi|254780410|r 48 DFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVE--LGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362)
Q Consensus 48 DF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE--~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362)
+|..+|.+++-==..+. ...+.....|.-.+++. +.-|+..+..+|++.+....-+.... ...-|.....|.+.
T Consensus 47 ~~l~~p~i~~~~K~~il---~~~~~~~~~~~~~nfl~lL~~~~R~~~l~~I~~~f~~l~~~~~~~-~~a~V~sA~~Ls~~ 122 (179)
T PRK13436 47 KLLSSHFIDKQKKFKII---DKIFSANIDIILINFLKIIAKNNLFINYKQILKKLIKKANSKLNI-TYGEIYSTEKLSEV 122 (179)
T ss_pred HHHCCCCCCHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCE-EEEEEEECCCCCHH
T ss_conf 98709999999999999---999842488999999999987773757999999999999997894-79999888999999
Q ss_pred HHHHHHH-----CCCCHHCCCCHH-HCCCCCEEEEEECCCCC
Q ss_conf 9864111-----023101104344-44569569998122887
Q gi|254780410|r 126 QKKQLAS-----YGDKINWYTSLA-DVPLGFTFLVANEFFDS 161 (362)
Q Consensus 126 Q~~~l~~-----~~~~v~w~~~l~-~~~~~~~iiiaNE~lDA 161 (362)
|++++.. .+.++.+....+ ++--|..+-+.|.++|+
T Consensus 123 q~~~i~~~l~k~~~k~v~l~~~vDpslIGG~ii~vgd~viD~ 164 (179)
T PRK13436 123 QISEFESKISKKLNKKVELVNKIDPKLIAGIRIIVDNKVFEN 164 (179)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCHHCCCEEEEECCEEEEH
T ss_conf 999999999999799659997667113083699999998758
No 192
>PRK02256 putative aminopeptidase 1; Provisional
Probab=23.87 E-value=49 Score=13.49 Aligned_cols=30 Identities=17% Similarity=0.449 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 999999998189804999999871089878646
Q gi|254780410|r 6 IRKIVNLIKKNGQMTVDQYFALCVADPEFGYYS 38 (362)
Q Consensus 6 ~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~ 38 (362)
.+.+++++++.|....++=- . -.|..+||.
T Consensus 43 V~~~~~~L~~aGF~~L~E~~--~-~~~g~kyy~ 72 (459)
T PRK02256 43 VKEIIKLAEEKGFINLEEII--K-LKPGDKVYA 72 (459)
T ss_pred HHHHHHHHHHCCCEECCCCC--C-CCCCCEEEE
T ss_conf 99999999987695776202--5-766981899
No 193
>KOG2584 consensus
Probab=23.76 E-value=49 Score=13.48 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999999998189804999999
Q gi|254780410|r 5 LIRKIVNLIKKNGQMTVDQYFA 26 (362)
Q Consensus 5 L~~~i~~~I~~~G~i~f~~fM~ 26 (362)
+.+.+.-..++.|-=||--||.
T Consensus 147 v~eem~~l~~ekGvnsF~~fma 168 (522)
T KOG2584 147 VKEEMEILVKEKGVNSFKFFMA 168 (522)
T ss_pred HHHHHHHHHHHCCCCEEEEEEE
T ss_conf 4889988765427532776632
No 194
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=23.56 E-value=49 Score=13.45 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=7.8
Q ss_pred HHHHHHHHCCEEEEEECCCC
Q ss_conf 99997620570599962433
Q gi|254780410|r 224 SISDRLACDGGTAIVIDYGY 243 (362)
Q Consensus 224 ~i~~~l~~~~G~~L~iDYGy 243 (362)
.+.+.|....+.-+++==|.
T Consensus 220 ~l~~~L~~~~~~qiiVVcGr 239 (388)
T PRK13609 220 ELCQSFMSVPDLQVVVVCGK 239 (388)
T ss_pred HHHHHHHCCCCCEEEEEECC
T ss_conf 99999745899249999089
No 195
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203 This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=22.87 E-value=30 Score=14.97 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=18.6
Q ss_pred HHHHHHHHC---CCEEECCEEHHHHHHHCCHHHHH
Q ss_conf 999999968---98363323389999978979999
Q gi|254780410|r 280 RLSSIAILY---KLYINGLTTQGKFLEGLGIWQRA 311 (362)
Q Consensus 280 ~L~~~a~~~---g~~~~g~~sQ~~FL~~~GI~~r~ 311 (362)
.|+..|.++ |+-+.|.+.-.+-|..+-|--+|
T Consensus 78 ~lA~~A~~NGWeGviv~GcVRDv~~L~~~~lGv~A 112 (155)
T TIGR01935 78 NLAELAEENGWEGVIVHGCVRDVAELAELDLGVKA 112 (155)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCEE
T ss_conf 56788650595149996230168886048901001
No 196
>COG1679 Predicted aconitase [General function prediction only]
Probab=22.51 E-value=47 Score=13.58 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf 89999999976205705999624336858
Q gi|254780410|r 219 DREMQSISDRLACDGGTAIVIDYGYLQSR 247 (362)
Q Consensus 219 ~~~~~~i~~~l~~~~G~~L~iDYGy~~~r 247 (362)
..-++.+...+...++..+.-==|.++.-
T Consensus 229 ~d~lKalgAA~atsgavam~HvegvTPE~ 257 (403)
T COG1679 229 EDELKALGAAMATSGAVAMYHVEGVTPEA 257 (403)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 89999988987504760489861778665
No 197
>KOG1661 consensus
Probab=22.09 E-value=53 Score=13.26 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=55.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC-----------CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999981898049999998710898786468-----------9888888886457671179999999999999998388
Q gi|254780410|r 8 KIVNLIKKNGQMTVDQYFALCVADPEFGYYST-----------CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGF 76 (362)
Q Consensus 8 ~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~~-----------~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~ 76 (362)
.|++..++++.|.=++ .+.|.-.-+-++|.- ..++|- +==+-||+++.- +.+.+...-.
T Consensus 12 ~LId~L~~~~~Ir~~~-v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~-n~~iSAp~mha~--------~le~L~~~L~ 81 (237)
T KOG1661 12 DLIDNLRENKIIRTRR-VEQAMRATDRSDYAPRSERTNPYMDSPQKIGY-NLTISAPHMHAT--------ALEYLDDHLQ 81 (237)
T ss_pred HHHHHHHHCCHHHHHH-HHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCC-CEEECCHHHHHH--------HHHHHHHHHC
T ss_conf 9999988611567888-99999862401104011246877787655677-548715478999--------9999998623
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 87621410078646898887999974185643012102363697899999864111
Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362)
Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362)
| ...++++|.|+|.|..=+-+-+.... ..-+=||--+.|.+.-+++|..
T Consensus 82 p-G~s~LdvGsGSGYLt~~~~~mvg~~g------~~~~GIEh~~eLVe~Sk~nl~k 130 (237)
T KOG1661 82 P-GASFLDVGSGSGYLTACFARMVGATG------GNVHGIEHIPELVEYSKKNLDK 130 (237)
T ss_pred C-CCCEEECCCCCCHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4-73101337874089999999945777------6651444159999999987776
No 198
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=22.04 E-value=53 Score=13.25 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=29.6
Q ss_pred HCCCEEEEECCHHHHHHHHHHHHH----CCCCHHCCCCHHHCCCC-CEEEEEEC
Q ss_conf 012102363697899999864111----02310110434444569-56999812
Q gi|254780410|r 109 SVLSIYMVETSERLTLIQKKQLAS----YGDKINWYTSLADVPLG-FTFLVANE 157 (362)
Q Consensus 109 ~~l~~~ivE~s~~l~~~Q~~~l~~----~~~~v~w~~~l~~~~~~-~~iiiaNE 157 (362)
-..+.+-++.|+.+++++-..+.. ...+=+|+ ++++|+++ .-.+||=|
T Consensus 23 ~~wR~~pp~~s~~M~~~~~~~~~~~d~~~~l~~~Wv-~yd~IS~nlk~AvIAsE 75 (228)
T TIGR02070 23 ALWRFVPPPVSAFMVERKLASLGQGDPEIELQHRWV-PYDKISPNLKRAVIASE 75 (228)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHCCHHHCEEEEECC
T ss_conf 887413889886579999986406875546445777-84443811201041114
No 199
>PRK06815 hypothetical protein; Provisional
Probab=20.68 E-value=56 Score=13.07 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=12.7
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 1410078646898887999
Q gi|254780410|r 81 RLVELGPGRGIMMLDILRV 99 (362)
Q Consensus 81 ~ivE~GaG~G~La~diL~~ 99 (362)
.|||.-+||-..+....-.
T Consensus 71 gVv~aSsGN~G~alA~~aa 89 (318)
T PRK06815 71 GVITASSGNHGQGVALAAK 89 (318)
T ss_pred EEEEECCCCHHHHHHHHHH
T ss_conf 4899368837999999999
No 200
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=20.34 E-value=57 Score=13.02 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=19.4
Q ss_pred ECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH
Q ss_conf 07864689888799997418564301210236369789999
Q gi|254780410|r 85 LGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362)
Q Consensus 85 ~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362)
-|+|.||.|.-|.+.+ .+..+....-||+.
T Consensus 8 PGsGKgTqa~~La~~~-----------~~~~is~gdlLR~~ 37 (194)
T cd01428 8 PGSGKGTQAERLAKKY-----------GLPHISTGDLLREE 37 (194)
T ss_pred CCCCHHHHHHHHHHHH-----------CCEEECHHHHHHHH
T ss_conf 9998799999999997-----------98467688999999
No 201
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=20.34 E-value=57 Score=13.02 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=43.0
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 45767117999999999999999838887621410078646898887999974185643012102363697899999864
Q gi|254780410|r 50 VTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362)
Q Consensus 50 ~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362)
-|=|..+.+= |+|=.++... . ....++++=||+|.|...-| ++ .+-..++||.+....+..+++
T Consensus 31 ~~RPT~drvR-EalFn~L~~~-----i-~~~~vLDLFAGSGalGlEAL---SR------GA~~v~fVE~~~~~~~~i~~N 94 (198)
T PRK10909 31 GLRPTTDRVR-ETLFNWLAPV-----I-VDARCLDCFAGSGALGLEAL---SR------YAAGATLLEMDRAVSQQLIKN 94 (198)
T ss_pred CCCCCCHHHH-HHHHHHHHHH-----C-CCCEEEECCCCCCHHHHHHH---HC------CCCEEEEEECCHHHHHHHHHH
T ss_conf 9687838899-9999875764-----2-99879982777468899999---87------997899997899999999999
Q ss_pred HHHC
Q ss_conf 1110
Q gi|254780410|r 130 LASY 133 (362)
Q Consensus 130 l~~~ 133 (362)
+...
T Consensus 95 ~~~l 98 (198)
T PRK10909 95 LATL 98 (198)
T ss_pred HHHH
T ss_conf 9984
No 202
>TIGR01228 hutU urocanate hydratase; InterPro: IPR000193 Urocanase (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H_2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD^+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD^+.; GO: 0016153 urocanate hydratase activity, 0006548 histidine catabolic process.
Probab=20.26 E-value=51 Score=13.36 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCC-CCCCCCCCCC
Q ss_conf 999999976205705999624336858888077640576-7670001000
Q gi|254780410|r 221 EMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGHT-YVSPLVNPGQ 269 (362)
Q Consensus 221 ~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~-~~dpl~~pG~ 269 (362)
....+...|.-++-...+||||=+ +|...+|+ ..|+|+.||-
T Consensus 296 ~~~~v~A~L~~Q~~G~~~FdYGNN-------~R~~A~~~G~~~aF~~PGf 338 (547)
T TIGR01228 296 MAKHVRAMLAFQKKGAVTFDYGNN-------IRQVAKEEGVEDAFDFPGF 338 (547)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCC-------HHHHHHHCCCCCCCCCCCC
T ss_conf 999999999998579835535555-------6889863475353447583
Done!