HHsearch results for GI: 254780410 and protein with PDBid: 1g8a_A
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=93.65 E-value=0.077 Score=31.17 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCCEE--ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH
Q ss_conf 88864--5767117999999999999999838887621410078646898887999974185643012102363697899
Q gi|254780410|r 46 VGDFV--TAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362)
Q Consensus 46 ~GDF~--Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362)
+|+.| -.|--|.+ |..+..-.+.++....-.|+++|+|+|+.+..+.+... | .-.++.||.|+...
T Consensus 44 ~~~~~r~w~p~rskl-----~a~i~~~l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg---~----~G~V~avD~s~~~l 111 (227)
T 1g8a_A 44 EGEEYRIWNPNRSKL-----GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---W----EGKIFGIEFSPRVL 111 (227)
T ss_dssp TTEEEEECCTTTCHH-----HHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---T----TSEEEEEESCHHHH
T ss_pred CCCEEEEECCCHHHH-----HHHHHCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHC---C----CCEEEEEECCHHHH
T ss_conf 881799867853689-----99997035316989999999971787889999999848---9----96699998999999
Q ss_pred HHHHHHHHH
Q ss_conf 999864111
Q gi|254780410|r 124 LIQKKQLAS 132 (362)
Q Consensus 124 ~~Q~~~l~~ 132 (362)
+.-+++...
T Consensus 112 ~~l~~~~~~ 120 (227)
T 1g8a_A 112 RELVPIVEE 120 (227)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHHH
T ss_conf 999987876