HHsearch results for GI: 254780410 and protein with PDBid: 1i4w_A
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.75 E-value=0.0062 Score=38.62 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=49.6
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC
Q ss_conf 8888888645767117999999999999999---8388876214100786468988879999741856430121023636
Q gi|254780410|r 42 PFGAVGDFVTAPEISQIFGEMLAIFLICAWE---QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362)
Q Consensus 42 ~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~---~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362)
.+|.. |..++.+.. .+++... ....+++.+|+|+|||.|.|.+-+++.. .| -+++++|+
T Consensus 29 ~~Gq~--fL~d~~l~~--------kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~---~p-----k~~i~iE~ 90 (353)
T 1i4w_A 29 FYGFK--YLWNPTVYN--------KIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY---CP-----RQYSLLEK 90 (353)
T ss_dssp GGGCC--CBCCHHHHH--------HHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH---CC-----SEEEEECC
T ss_pred HHCHH--HCCCHHHHH--------HHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC---CC-----CEEEEEEC
T ss_conf 63544--438999999--------99987367633357789969998999889999998525---88-----76999977
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 97899999864111
Q gi|254780410|r 119 SERLTLIQKKQLAS 132 (362)
Q Consensus 119 s~~l~~~Q~~~l~~ 132 (362)
.+.+.+.-++.+..
T Consensus 91 D~~~~~~L~~~~~~ 104 (353)
T 1i4w_A 91 RSSLYKFLNAKFEG 104 (353)
T ss_dssp CHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHCC
T ss_conf 78899999987145