HHsearch results for GI: 254780410 and protein with PDBid: 1nkv_A
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=95.36 E-value=0.11 Score=29.99 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=76.8
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCCCCHHHCCCCCE
Q ss_conf 3888762141007864689888799997418564301210236369789999986411102--31011043444456956
Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWYTSLADVPLGFT 151 (362)
Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~~~l~~~~~~~~ 151 (362)
++....-.|+|+|.|+|.++..+.+. + ..+++-||.|+.+.+.-+++....+ ++|.+
T Consensus 32 l~l~pg~rVLDiGcG~G~~~~~la~~-----~----~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~------------ 90 (256)
T 1nkv_A 32 LRMKPGTRILDLGSGSGEMLCTWARD-----H----GITGTGIDMSSLFTAQAKRRAEELGVSERVHF------------ 90 (256)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHH-----T----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE------------
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH-----C----CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCC------------
T ss_conf 08999999999858888899999986-----4----99899998983677899886776065544441------------
Q ss_pred EEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 99981228875235899915664689989960795352257643432234633165684112793478999999997620
Q gi|254780410|r 152 FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLAC 231 (362)
Q Consensus 152 iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~ 231 (362)
+.+ ...+-+|-..| -..+.. + ..+..+.....++.+...|+.
T Consensus 91 -~~~-d~~~~~~~~~f--------D~v~~~---~-------------------------~~~~~~~~~~~l~~~~r~Lkp 132 (256)
T 1nkv_A 91 -IHN-DAAGYVANEKC--------DVAACV---G-------------------------ATWIAGGFAGAEELLAQSLKP 132 (256)
T ss_dssp -EES-CCTTCCCSSCE--------EEEEEE---S-------------------------CGGGTSSSHHHHHHHTTSEEE
T ss_pred -CCC-CHHHCCCCCCE--------EEEEEE---C-------------------------CEECCCCHHHHHHHHHHHCCC
T ss_conf -136-36450567844--------699997---4-------------------------410268999999999997393
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCE
Q ss_conf 57059996243368588880776405767670001000345312688999999996898363323
Q gi|254780410|r 232 DGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296 (362)
Q Consensus 232 ~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~ 296 (362)
+|.+++.|...........+. ...+............+...++++|+.++...
T Consensus 133 -gG~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~aGf~~v~~~ 185 (256)
T 1nkv_A 133 -GGIMLIGEPYWRQLPATEEIA-----------QACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp -EEEEEEEEEEETTCCSSHHHH-----------HTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred -CCEEEEEECCCCCCCCCHHHH-----------HHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf -868999966445789817899-----------87255787677899999999998599899999