HHsearch results for GI: 254780410 and protein with PDBid: 1nkv_A

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=95.36  E-value=0.11  Score=29.99  Aligned_cols=152  Identities=12%  Similarity=0.116  Sum_probs=76.8

Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCCCCHHHCCCCCE
Q ss_conf             3888762141007864689888799997418564301210236369789999986411102--31011043444456956
Q gi|254780410|r   74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWYTSLADVPLGFT  151 (362)
Q Consensus        74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~~~l~~~~~~~~  151 (362)
                      ++....-.|+|+|.|+|.++..+.+.     +    ..+++-||.|+.+.+.-+++....+  ++|.+            
T Consensus        32 l~l~pg~rVLDiGcG~G~~~~~la~~-----~----~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~------------   90 (256)
T 1nkv_A           32 LRMKPGTRILDLGSGSGEMLCTWARD-----H----GITGTGIDMSSLFTAQAKRRAEELGVSERVHF------------   90 (256)
T ss_dssp             TCCCTTCEEEEETCTTCHHHHHHHHH-----T----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE------------
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHH-----C----CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCC------------
T ss_conf             08999999999858888899999986-----4----99899998983677899886776065544441------------


Q ss_pred             EEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf             99981228875235899915664689989960795352257643432234633165684112793478999999997620
Q gi|254780410|r  152 FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLAC  231 (362)
Q Consensus       152 iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~  231 (362)
                       +.+ ...+-+|-..|        -..+..   +                         ..+..+.....++.+...|+.
T Consensus        91 -~~~-d~~~~~~~~~f--------D~v~~~---~-------------------------~~~~~~~~~~~l~~~~r~Lkp  132 (256)
T 1nkv_A           91 -IHN-DAAGYVANEKC--------DVAACV---G-------------------------ATWIAGGFAGAEELLAQSLKP  132 (256)
T ss_dssp             -EES-CCTTCCCSSCE--------EEEEEE---S-------------------------CGGGTSSSHHHHHHHTTSEEE
T ss_pred             -CCC-CHHHCCCCCCE--------EEEEEE---C-------------------------CEECCCCHHHHHHHHHHHCCC
T ss_conf             -136-36450567844--------699997---4-------------------------410268999999999997393


Q ss_pred             CCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCE
Q ss_conf             57059996243368588880776405767670001000345312688999999996898363323
Q gi|254780410|r  232 DGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT  296 (362)
Q Consensus       232 ~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~  296 (362)
                       +|.+++.|...........+.           ...+............+...++++|+.++...
T Consensus       133 -gG~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~aGf~~v~~~  185 (256)
T 1nkv_A          133 -GGIMLIGEPYWRQLPATEEIA-----------QACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV  185 (256)
T ss_dssp             -EEEEEEEEEEETTCCSSHHHH-----------HTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred             -CCEEEEEECCCCCCCCCHHHH-----------HHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             -868999966445789817899-----------87255787677899999999998599899999