HHsearch results for GI: 254780410 and protein with PDBid: 1yub_A
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.86 E-value=0.00036 Score=47.10 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=47.2
Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf 98888888864576711799999999999999983888762141007864689888799997418564301210236369
Q gi|254780410|r 40 CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362)
Q Consensus 40 ~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362)
..++|. .|.+.+.+-. .+.+..+..+.-.|+|+|||.|.|..-+++. ..+++.||+.
T Consensus 4 ~~k~GQ--nFL~d~~i~~-----------~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~----------~~~v~aiE~D 60 (245)
T 1yub_A 4 NIKYSQ--NFLTSEKVLN-----------QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI----------SKQVTSIELD 60 (245)
T ss_dssp CCCSCC--CBCCCTTTHH-----------HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH----------SSEEEESSSS
T ss_pred CCCCCC--CCCCCHHHHH-----------HHHHHCCCCCCCEEEEECCCHHHHHHHHHHC----------CCCCEEECCC
T ss_conf 988787--1478989999-----------9999458999996899799735999999961----------6500403404
Q ss_pred HHHHHHHHHHHH
Q ss_conf 789999986411
Q gi|254780410|r 120 ERLTLIQKKQLA 131 (362)
Q Consensus 120 ~~l~~~Q~~~l~ 131 (362)
+.|.+.-+++++
T Consensus 61 ~~l~~~l~~~~~ 72 (245)
T 1yub_A 61 SHLFNLSSEKLK 72 (245)
T ss_dssp CSSSSSSSCTTT
T ss_pred HHHHHHHHHHHH
T ss_conf 466898875541