HHsearch results for GI: 254780410 and protein with PDBid: 3mb5_A
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=94.99 E-value=0.075 Score=31.22 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCC-CCCEEEC----------CCCCHHHHHHHH--------HHHHHHHHHCCCCCCCEEEEECCCCHHHH
Q ss_conf 8786468988888-8886457----------671179999999--------99999999838887621410078646898
Q gi|254780410|r 33 EFGYYSTCNPFGA-VGDFVTA----------PEISQIFGEMLA--------IFLICAWEQHGFPSCVRLVELGPGRGIMM 93 (362)
Q Consensus 33 ~~GYY~~~~~~G~-~GDF~Ts----------p~is~~Fg~~ia--------~~~~~~~~~~~~p~~~~ivE~GaG~G~La 93 (362)
.+|++.-.+.+|+ .||.+++ |.+.... ..+- .-+..+...++....-.|+|+|+|+|.++
T Consensus 30 ~~G~~~~~~iig~~~G~~v~~~~g~~~~~~~p~~~~~~-~~~~r~~qiiyp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt 108 (255)
T 3mb5_A 30 DLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYL-DKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALT 108 (255)
T ss_dssp TTEEEEGGGGTTCCTTCEEECTTCCEEEEECCCHHHHH-HHSCCCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHH
T ss_pred CCEEEEHHHHCCCCCCCEEEECCCCEEEEECCCHHHHH-HHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
T ss_conf 88888789962999981999589978999589989998-41878874658899999999719898998998886627999
Q ss_pred HHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 88799997418564301210236369789999986411102
Q gi|254780410|r 94 LDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 94 ~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
..+.+... | .-+++.+|.|+.+.+.-++++...+
T Consensus 109 ~~lar~~~---~----~G~V~~~D~~~~~~~~A~~n~~~~g 142 (255)
T 3mb5_A 109 LFLANIVG---P----EGRVVSYEIREDFAKLAWENIKWAG 142 (255)
T ss_dssp HHHHHHHC---T----TSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---C----CCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 99997438---8----9779983499999999999999719