HHsearch results for GI: 254780410 and protein with PDBid: 3ocj_A
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=90.10 E-value=0.97 Score=23.62 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=34.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 6214100786468988879999741856430121023636978999998641110
Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362)
Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362)
.-.|+++|.|+|..+..+.. ...| ..+++-|+.|+.+.+.-+++....
T Consensus 119 g~~vLDvGcG~G~~~~~l~~---~~~p----~~~v~gvD~S~~~l~~A~~~~~~~ 166 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDY---SACP----GVQLVGIDYDPEALDGATRLAAGH 166 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCC---TTCT----TCEEEEEESCHHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCHHHHHHHHH---HHCC----CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 59999944747699999999---7189----958999979888999997530220