RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780410|ref|YP_003064823.1| hypothetical protein
CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62]
(362 letters)
>gnl|CDD|31753 COG1565, COG1565, Uncharacterized conserved protein [Function
unknown].
Length = 370
Score = 305 bits (783), Expect = 1e-83
Identities = 138/366 (37%), Positives = 200/366 (54%), Gaps = 19/366 (5%)
Query: 8 KIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFL 67
I LI + G ++ + L + DPE GYYS+ G GDF+TAPE+SQ+FGE+LA
Sbjct: 7 IIRALIAQGGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQF 66
Query: 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQK 127
+ W++ G P+ ++LVE+G GRG + DILR + +L P+ + LS Y++E S L QK
Sbjct: 67 LQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126
Query: 128 KQLASYGDKINWYTSLADVPLGFT-FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDS 186
+ L + D I W + D+P F +V+NE FD+LP++QF+ T+ ER++ +D
Sbjct: 127 ETLKATEDLIRWVEWVEDLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGR 186
Query: 187 LVFNIGDHEIKSNFLTCSD---YFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGY 243
LVF+ +E+ L D G I E SP R+ +++I++RL G + IDYGY
Sbjct: 187 LVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERLE--RGVFLFIDYGY 244
Query: 244 L-------QSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296
+ G TLQA + H + PL NPG ADL++HVDF L+ A L + G
Sbjct: 245 PAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLEVLGFK 304
Query: 297 TQGKFLEGLGIWQRAFSLMKQT--ARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEK 354
TQG FL LG+ +R +L AR + VKRL MGELFK+L +
Sbjct: 305 TQGDFLLDLGLLERLATLSAGKDDARYLKIAAQVKRL----ISPGGMGELFKVLAFGKKL 360
Query: 355 VELMPF 360
+PF
Sbjct: 361 KIDLPF 366
>gnl|CDD|38112 KOG2901, KOG2901, KOG2901, Uncharacterized conserved protein
[Function unknown].
Length = 415
Score = 253 bits (648), Expect = 5e-68
Identities = 128/364 (35%), Positives = 194/364 (53%), Gaps = 27/364 (7%)
Query: 3 NKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEM 62
L++ + + IK G +TV +Y + +P+ GYY + FGA GDF+T+PEISQIFGEM
Sbjct: 33 PHLVKHLKSKIKSTGPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEM 92
Query: 63 LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122
+ ++ + WEQ G P +LVELGPGRG +M D+LRV+ K K + SV ++VE S L
Sbjct: 93 IGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKDEDLSV---HLVEVSPAL 149
Query: 123 TLIQKKQLASY--------------GDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFV 168
+ +Q + L G I+W+ +L DVP GFT ++A+EFFD+LP+ QF
Sbjct: 150 SKLQAQNLCCTDESLSEYKKGSTLSGTPIHWHRTLQDVPSGFTLIIAHEFFDALPVHQFQ 209
Query: 169 MTEHGIRERMIDIDQHDSLVFNIGDHE-IKSNFLTCSDYFLGAIFENSPCRDREMQSISD 227
+ G E M+D+ + F + + +L + E+SP + + ++
Sbjct: 210 KSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLMPATDETREKMEHSPESGKSVDLLAK 269
Query: 228 RLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAIL 287
R+ DGG A++IDYG+ + D+ +A K H V L PG ADL++ VDF L A
Sbjct: 270 RIGSDGGGALIIDYGHDGIKT-DSFRAFKKHKLVDILDMPGSADLTADVDFTYLRHAA-E 327
Query: 288 YKLYINGLTTQGKFLEGLGIWQRAFSLM---KQTARKDILLDSVKRLVSTSADKKSMGEL 344
+ NG Q FL G+GI R L+ + ++++ LL L+ + K MGE
Sbjct: 328 GNVDKNGPRKQHCFLNGMGIEIRLKILLDKSNEPSQQEQLLQGYDMLM----NPKKMGER 383
Query: 345 FKIL 348
F
Sbjct: 384 FNFF 387
>gnl|CDD|145672 pfam02636, DUF185, Uncharacterized ACR, COG1565. This family
contains several uncharacterized proteins. One member
has been described as an ATP synthase beta subunit
transcription termination factor rho protein.
Length = 240
Score = 212 bits (542), Expect = 1e-55
Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 11/232 (4%)
Query: 62 MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121
+LA +L W+ G P +RLVE+G GRG + DILR + KL P+F+ L ++VE S
Sbjct: 1 LLARWLAQLWKALGSPPPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPA 60
Query: 122 LTLIQKKQLASYGDK-INWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID 180
L QK++LA D + W L ++P ++ANE FD+LP+ F G RER +
Sbjct: 61 LRERQKERLAGSADLLVKWLDELPELP-FPGVVLANEVFDALPVDLFRRDGGGWRERYVG 119
Query: 181 IDQHDSLVFNIG---DHEIKSNFL-TCSDYFLGAIFENSPCRDREMQSISDRLACDGGTA 236
+D+ VF +G + + G E P + ++ +++RL G
Sbjct: 120 LDEDGKFVFELGPLSTPSLSDYLPELALNLPEGYRLEIPPAAEAFLEQLAERL--PRGAL 177
Query: 237 IVIDYGYLQS--RVGDTLQAVKGHTYV-SPLVNPGQADLSSHVDFQRLSSIA 285
++IDYGY S R TL+A + H PLVNPG+AD+++HVDF L+ A
Sbjct: 178 LIIDYGYPASEYRNNGTLRAYRRHRVHDDPLVNPGEADITAHVDFTALAEAA 229
>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes..
Length = 475
Score = 30.3 bits (69), Expect = 0.76
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 167 FVMTEHGI--RERMIDIDQHDS 186
F++TEHGI RER I++ Q D
Sbjct: 200 FLLTEHGIYTRERKIELLQADW 221
>gnl|CDD|146598 pfam04051, TRAPP, Transport protein particle (TRAPP) component.
TRAPP plays a key role in the targeting and/or fusion of
ER-to-Golgi transport vesicles with their acceptor
compartment. TRAPP is a large multimeric protein that
contains at least 10 subunits. This family contains many
TRAPP family proteins. The Bet3 subunit is one of the
better characterized TRAPP proteins and has a dimeric
structure with hydrophobic channels. The channel
entrances are located on a putative membrane-interacting
surface that is distinctively flat, wide and decorated
with positively charged residues. Bet3 is proposed to
localize TRAPP to the Golgi.
Length = 148
Score = 27.5 bits (62), Expect = 6.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 72 EQHGFPSCVRLVEL-----GPGRGIMMLDILRVICKLKPDFFSVL 111
E+ G+ RL+E R +L++L+ ICK D + +L
Sbjct: 25 EKMGYNIGQRLIERLLARSKSKRCTDLLEVLKFICK---DLWKML 66
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.140 0.417
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,403,252
Number of extensions: 237222
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 9
Length of query: 362
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,210,882
Effective search space: 1124305494
Effective search space used: 1124305494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)