BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780410|ref|YP_003064823.1| hypothetical protein
CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62]
(362 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 362
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFG 60
MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFG
Sbjct: 1 MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFG 60
Query: 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120
EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE
Sbjct: 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120
Query: 121 RLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID 180
RLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID
Sbjct: 121 RLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID 180
Query: 181 IDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID 240
IDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID
Sbjct: 181 IDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID 240
Query: 241 YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGK 300
YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGK
Sbjct: 241 YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGK 300
Query: 301 FLEGLGIWQRAFSLMKQTARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPF 360
FLEGLGIWQRAFSLMKQTARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPF
Sbjct: 301 FLEGLGIWQRAFSLMKQTARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPF 360
Query: 361 VN 362
VN
Sbjct: 361 VN 362
>gi|254780351|ref|YP_003064764.1| MarR family transcriptional regulator [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 26.6 bits (57), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 187 LVFNIGDHEIKSNFLTCSDYFLGA 210
L+FNIGD E+ + L Y+LG+
Sbjct: 62 LLFNIGDLELTAGELRSRGYYLGS 85
>gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str.
psy62]
Length = 186
Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 238 VIDYGYLQSRVGDTLQAVKGH--TYVSPLVNPGQADL------SSHVDFQRLSSIAIL 287
VID ++ R+GDT+ +K T + V+P DL SHV +++++ +L
Sbjct: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61
>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 536
Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 193 DHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTL 252
DHE++S L + + FE S CR+ + ++ + + G + I
Sbjct: 103 DHELESIDLVVVNLYP---FEESFCREDDYYTMVENIDIGGPSMI--------------R 145
Query: 253 QAVKGHTYVSPLVNP 267
A K H YV+ L NP
Sbjct: 146 AAAKNHDYVTILTNP 160
>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 299
Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 266 NPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIWQRAFSLMKQTARKDILL 325
N G+ ++ ++LS + G T +G + AF+L +Q R DI
Sbjct: 230 NEGKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIET 289
Query: 326 DSVKRLVST 334
D +K LVS
Sbjct: 290 D-LKTLVSA 297
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 27/137 (19%)
Query: 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126
LI E HGF ++ L ++ +I VI + F + I + ET L+
Sbjct: 424 LIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD----LLG 479
Query: 127 KKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQ---FVMTEHGIRE--RMIDI 181
KK K N + A FFDS I++ V EHGI R+ I
Sbjct: 480 KKIARRVVRKKNVH--------------AQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSI 525
Query: 182 DQ----HDSLVFNIGDH 194
+ HD L + D+
Sbjct: 526 EVSGTFHDCLELHYADN 542
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,005
Number of Sequences: 1233
Number of extensions: 9677
Number of successful extensions: 28
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 6
length of query: 362
length of database: 328,796
effective HSP length: 75
effective length of query: 287
effective length of database: 236,321
effective search space: 67824127
effective search space used: 67824127
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)