BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62] (362 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62] Length = 362 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/362 (100%), Positives = 362/362 (100%) Query: 1 MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFG 60 MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFG Sbjct: 1 MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFG 60 Query: 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE Sbjct: 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 Query: 121 RLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID 180 RLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID Sbjct: 121 RLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID 180 Query: 181 IDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID 240 IDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID Sbjct: 181 IDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVID 240 Query: 241 YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGK 300 YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGK Sbjct: 241 YGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGK 300 Query: 301 FLEGLGIWQRAFSLMKQTARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPF 360 FLEGLGIWQRAFSLMKQTARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPF Sbjct: 301 FLEGLGIWQRAFSLMKQTARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVELMPF 360 Query: 361 VN 362 VN Sbjct: 361 VN 362 >gi|254780351|ref|YP_003064764.1| MarR family transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 26.6 bits (57), Expect = 0.67, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 187 LVFNIGDHEIKSNFLTCSDYFLGA 210 L+FNIGD E+ + L Y+LG+ Sbjct: 62 LLFNIGDLELTAGELRSRGYYLGS 85 >gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%) Query: 238 VIDYGYLQSRVGDTLQAVKGH--TYVSPLVNPGQADL------SSHVDFQRLSSIAIL 287 VID ++ R+GDT+ +K T + V+P DL SHV +++++ +L Sbjct: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 >gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 536 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 17/75 (22%) Query: 193 DHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTL 252 DHE++S L + + FE S CR+ + ++ + + G + I Sbjct: 103 DHELESIDLVVVNLYP---FEESFCREDDYYTMVENIDIGGPSMI--------------R 145 Query: 253 QAVKGHTYVSPLVNP 267 A K H YV+ L NP Sbjct: 146 AAAKNHDYVTILTNP 160 >gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 266 NPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIWQRAFSLMKQTARKDILL 325 N G+ ++ ++LS + G T +G + AF+L +Q R DI Sbjct: 230 NEGKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIET 289 Query: 326 DSVKRLVST 334 D +K LVS Sbjct: 290 D-LKTLVSA 297 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 27/137 (19%) Query: 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 LI E HGF ++ L ++ +I VI + F + I + ET L+ Sbjct: 424 LIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD----LLG 479 Query: 127 KKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQ---FVMTEHGIRE--RMIDI 181 KK K N + A FFDS I++ V EHGI R+ I Sbjct: 480 KKIARRVVRKKNVH--------------AQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSI 525 Query: 182 DQ----HDSLVFNIGDH 194 + HD L + D+ Sbjct: 526 EVSGTFHDCLELHYADN 542 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.140 0.417 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 234,005 Number of Sequences: 1233 Number of extensions: 9677 Number of successful extensions: 28 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 6 length of query: 362 length of database: 328,796 effective HSP length: 75 effective length of query: 287 effective length of database: 236,321 effective search space: 67824127 effective search space used: 67824127 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)