HHsearch alignment for GI: 254780411 and conserved domain: TIGR00544
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase is the bacterial enzyme that catalyzes the first step in lipoprotein biogenesis, it transfers the n-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins. Prolipoprotein diacylglyceryl transferase (gene lgt) is an integral membrane protein.; GO: 0016740 transferase activity, 0009249 protein lipoylation, 0016020 membrane.
Probab=100.00 E-value=0 Score=316.48 Aligned_cols=265 Identities=40% Similarity=0.712 Sum_probs=227.2
Q ss_pred HHHCCCCCCHHHEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97528899112163576--2258999999999999999999997223422000233344555734678889999999874
Q gi|254780411|r 9 SILTYPNLNPVALSLGP--IAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIV 86 (288)
Q Consensus 9 ~~~~yp~~~Pvlf~iGp--~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~gii 86 (288)
T Consensus 4 ~~~~~p~~~p~~f~~G~~g~~~~Wyg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR00544 4 SILLYPPWDPVAFSLGGPGIPLHWYGLIYALGILFGILLAVRRLNRDNK---------RRGIQKDEFEDLLFWAVLGAIL 74 (358)
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4334677775158756896400378899999999999999998614775---------5688514689999999998862
Q ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHH------------------------
Q ss_conf 677899971087-8742114443220004--------3100279899999998888------------------------
Q gi|254780411|r 87 GGRIMYVLFYNW-QVFWNSPLHIFFLWEG--------GMSFHGGLIGAFVSLFLLS------------------------ 133 (288)
Q Consensus 87 GARl~yvlf~~~-~~y~~~p~~i~~iw~G--------Gls~~Gg~ig~~~~~~~~~------------------------ 133 (288)
T Consensus 75 g~r~~~~~~~~~~~~~~~~~~~~~~~~~gh~~f~g~~G~~~hGg~~g~~~~~~~~~n~~l~~~~~~~~~~~~ll~~~~~~ 154 (358)
T TIGR00544 75 GARLGYVLFYWPSGYYLAHPLNIFRPWDGHGNFTGFRGLAIHGGLLGAIIAGLIFSNTFLNNKTNKTKTTAELLNNKNEI 154 (358)
T ss_pred HHHHHHHEEECCCCCHHCCCCHHEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
T ss_conf 01232110011464001043011000024554000021121004899999999886322013332035688874150023
Q ss_pred ----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------CCCCCCCCCC--------------
Q ss_conf ----75499812410001367789999998776556663112344-----------7433336320--------------
Q gi|254780411|r 134 ----RIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSW-----------VPWAMVFPDG-------------- 184 (288)
Q Consensus 134 ----~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~-----------~pwgv~fp~~-------------- 184 (288)
T Consensus 155 ~~~~~~~~~~~~~~~d~~~p~~~~G~~~Gr~gnf~n~e~~G~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 234 (358)
T TIGR00544 155 KAVYRERNLSFWKLLDLIAPAVPLGQAIGRWGNFFNQELYGRALPGGINDPNALANFPWGLLIPGAPKFDSLLGLWIWPG 234 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 34444456778888888888988777876666542101203102464211145542023442255403566776554100
Q ss_pred ---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHCCCC------------
Q ss_conf ---01123222458999986-6676667776544310---5842206799999999999987710672------------
Q gi|254780411|r 185 ---GSLPRHPSQLYEAITEG-LMIFLIMQLMVYRGSF---KSPGLTAGAFAICYSVVRFFMEFFREPD------------ 245 (288)
Q Consensus 185 ---~~~p~hPtqLYEa~~~~-l~~~~ll~~~~~~~~~---~~~G~~~~~yl~~Y~~~Rf~iEf~R~~~------------ 245 (288)
T Consensus 235 ~~~~~~~~~P~~l~e~~~~g~~~~~~~~~~~~~~~~~p~~~~~g~~~~~y~~~y~~~r~~~e~~r~~~~~lg~~~~~~p~ 314 (358)
T TIGR00544 235 DLIDGLPRHPSFLYESFLEGFVVLFLLLLLFIKGLRPPEKIYDGTIFGVYLLGYGLFRFIIEGLREPDKELGFIITYKPI 314 (358)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEHHH
T ss_conf 22101001147899988747999999999997157871132103677889999889988876215740130322330034
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1102443112248999999999999999999835787
Q gi|254780411|r 246 YQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKS 282 (288)
Q Consensus 246 ~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~ 282 (288)
T Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (358)
T TIGR00544 315 LQLTGSLFLNISMGQILSLLGILGGLFLLLLAYKLSD 351 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5642356778888899999999999999987641355