RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (288 letters)



>gnl|CDD|110765 pfam01790, LGT, Prolipoprotein diacylglyceryl transferase. 
          Length = 257

 Score =  237 bits (608), Expect = 2e-63
 Identities = 116/272 (42%), Positives = 164/272 (60%), Gaps = 27/272 (9%)

Query: 15  NLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQE 74
           +++PVA S+GP+AIRWYGL Y +G+L   W  +    K  +      N++ +       +
Sbjct: 1   SIDPVAFSIGPLAIRWYGLMYAIGILLAYWLARKRAKKRGI------NKDQL-------D 47

Query: 75  SCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSR 134
               W  +  I+G R+ YVLFY+W  +  +PL IF +WEGGM+ HGGLIG  ++  L SR
Sbjct: 48  DLLLWAVLGGIIGARLGYVLFYDWSYYLQNPLEIFKIWEGGMAIHGGLIGGILAALLFSR 107

Query: 135 IYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMVFP---------DGG 185
               SFL   DL+A +VP+G  +GR  NFINGEL+GR + +PWA++FP           G
Sbjct: 108 KKKLSFLKLADLIAPAVPLGQAIGRWGNFINGELYGRPTDLPWAIIFPLPNFIINQMYIG 167

Query: 186 SLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPD 245
            LPRHP+QLYE+I EG++ F+I+ L   +   K PG   G + I Y + RFF+EFFREPD
Sbjct: 168 GLPRHPTQLYESILEGIVFFIILWLRRRKKKLK-PGFVFGLYLIGYGLGRFFIEFFREPD 226

Query: 246 YQLGYLLGGWMTMGMILSILPFLVGVGMVFQS 277
            Q    LGG + MG ILSI   L+G+ ++  +
Sbjct: 227 LQ----LGGGLRMGQILSIPMILLGIILIIFA 254


>gnl|CDD|31026 COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell
           envelope biogenesis, outer membrane].
          Length = 287

 Score =  207 bits (529), Expect = 2e-54
 Identities = 120/286 (41%), Positives = 160/286 (55%), Gaps = 31/286 (10%)

Query: 6   MLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENL 65
           M  S L +P ++PVA S+GP+AIRWYGL Y++G+L   W  +    KP   T+       
Sbjct: 1   MPLSYLIFPPIDPVAFSIGPLAIRWYGLMYVLGILLAYWLARKRARKPGGITDDD----- 55

Query: 66  VYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWN-SPLHIFFLWEGGMSFHGGLIG 124
                   E    W  +  I+G R+ YVLFY    + N +PL IF +WEGGMS HGGLIG
Sbjct: 56  -------FEDFILWAVLGGIIGARLGYVLFYWPSYYQNANPLDIFKIWEGGMSIHGGLIG 108

Query: 125 AFVSLFLLSR--IYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVP-----W 177
             ++  + SR      SFL  LDL+A SVP+G  +GR  NFIN EL+GR +  P     W
Sbjct: 109 GILAALIFSRKKRKKISFLQLLDLIAPSVPLGQAIGRWGNFINQELYGRPTTGPWNLPHW 168

Query: 178 AMVFPDG--------GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAI 229
            M FP+         G+LPRHPSQLYE+  EG++ F+I+ L   +      G   G + I
Sbjct: 169 PMFFPNPMYIDGAYTGALPRHPSQLYESFLEGIVFFIILFLFRRKPL-LKSGFVFGLYLI 227

Query: 230 CYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVF 275
            Y + RFF+EFFREPD  LG L+     MG ILSI   L+G+ ++ 
Sbjct: 228 GYGLFRFFIEFFREPDLMLGGLIRIL--MGQILSIPMILLGLWLII 271


>gnl|CDD|36680 KOG1467, KOG1467, KOG1467, Translation initiation factor 2B, delta
           subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal
           structure and biogenesis].
          Length = 556

 Score = 30.4 bits (68), Expect = 0.60
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 180 VFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFME 239
           V     SL  H  Q   A T+ + +  I   ++  G   + G  +G+ A C ++++ F E
Sbjct: 206 VASQKVSLFTHLPQYDRATTQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQE 265

Query: 240 FFREPDYQ 247
             +  DY 
Sbjct: 266 VIK--DYT 271


>gnl|CDD|35038 COG5479, COG5479, Uncharacterized protein potentially involved in
           peptidoglycan biosynthesis [Cell envelope biogenesis,
           outer membrane].
          Length = 556

 Score = 29.6 bits (66), Expect = 0.98
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 169 WGRVSWVPWAMVFPDGGSLPRHPSQLYEAITEG 201
           WGR  W    + +P GG +P   SQ++   T G
Sbjct: 207 WGRAGWEAGPLGYPTGGEVPLGGSQIFVGHTTG 239


>gnl|CDD|35697 KOG0476, KOG0476, KOG0476, Cl- channel CLC-2 and related proteins
           (CLC superfamily) [Inorganic ion transport and
           metabolism].
          Length = 931

 Score = 29.2 bits (65), Expect = 1.5
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 103 NSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIAN 162
             P HI   W        G +  F +L L    +   F + +      VP G+F   +  
Sbjct: 423 LCPAHILTHWYHP----EGDVSIFGTLVLF---FLMYFWMSIIATTIPVPSGVF---MPV 472

Query: 163 FINGELWGRVSWVPWAMVFPDG 184
           F+ G  +GR+     A++FP+G
Sbjct: 473 FVIGAAFGRLVGEIMAVLFPEG 494


>gnl|CDD|31812 COG1625, COG1625, Fe-S oxidoreductase, related to NifB/MoaA family
           [Energy production and conversion].
          Length = 414

 Score = 28.7 bits (64), Expect = 2.1
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 5/63 (7%)

Query: 208 MQLMVYRGSFKSPGLTAGAFAICY----SVVRFFMEFFREPDYQLGYLLGGWMTM-GMIL 262
             L +                 CY       R    ++++ D +L +  G   T+     
Sbjct: 70  EDLGLEFEEVLGAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAE 129

Query: 263 SIL 265
            I+
Sbjct: 130 RII 132


>gnl|CDD|34930 COG5360, COG5360, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 566

 Score = 27.3 bits (60), Expect = 5.5
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 178 AMVFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFF 237
             + PDGG + R+P     A  E L+  L ++          P     A       +R  
Sbjct: 226 RQILPDGGHISRNP----RAGLELLLDLLPLRQTYANLGHDPPSALIPAIDRMLPALR-- 279

Query: 238 MEFFREPDYQLGYLLGGWMTM 258
             FFR  D  L    G   T+
Sbjct: 280 --FFRHQDGSLALFNGATATL 298


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.330    0.146    0.491 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,996,963
Number of extensions: 235144
Number of successful extensions: 1024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 106
Length of query: 288
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,254,100
Effective search space: 829549500
Effective search space used: 829549500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.6 bits)