RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >gnl|CDD|110765 pfam01790, LGT, Prolipoprotein diacylglyceryl transferase. Length = 257 Score = 237 bits (608), Expect = 2e-63 Identities = 116/272 (42%), Positives = 164/272 (60%), Gaps = 27/272 (9%) Query: 15 NLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQE 74 +++PVA S+GP+AIRWYGL Y +G+L W + K + N++ + + Sbjct: 1 SIDPVAFSIGPLAIRWYGLMYAIGILLAYWLARKRAKKRGI------NKDQL-------D 47 Query: 75 SCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSR 134 W + I+G R+ YVLFY+W + +PL IF +WEGGM+ HGGLIG ++ L SR Sbjct: 48 DLLLWAVLGGIIGARLGYVLFYDWSYYLQNPLEIFKIWEGGMAIHGGLIGGILAALLFSR 107 Query: 135 IYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMVFP---------DGG 185 SFL DL+A +VP+G +GR NFINGEL+GR + +PWA++FP G Sbjct: 108 KKKLSFLKLADLIAPAVPLGQAIGRWGNFINGELYGRPTDLPWAIIFPLPNFIINQMYIG 167 Query: 186 SLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPD 245 LPRHP+QLYE+I EG++ F+I+ L + K PG G + I Y + RFF+EFFREPD Sbjct: 168 GLPRHPTQLYESILEGIVFFIILWLRRRKKKLK-PGFVFGLYLIGYGLGRFFIEFFREPD 226 Query: 246 YQLGYLLGGWMTMGMILSILPFLVGVGMVFQS 277 Q LGG + MG ILSI L+G+ ++ + Sbjct: 227 LQ----LGGGLRMGQILSIPMILLGIILIIFA 254 >gnl|CDD|31026 COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]. Length = 287 Score = 207 bits (529), Expect = 2e-54 Identities = 120/286 (41%), Positives = 160/286 (55%), Gaps = 31/286 (10%) Query: 6 MLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENL 65 M S L +P ++PVA S+GP+AIRWYGL Y++G+L W + KP T+ Sbjct: 1 MPLSYLIFPPIDPVAFSIGPLAIRWYGLMYVLGILLAYWLARKRARKPGGITDDD----- 55 Query: 66 VYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWN-SPLHIFFLWEGGMSFHGGLIG 124 E W + I+G R+ YVLFY + N +PL IF +WEGGMS HGGLIG Sbjct: 56 -------FEDFILWAVLGGIIGARLGYVLFYWPSYYQNANPLDIFKIWEGGMSIHGGLIG 108 Query: 125 AFVSLFLLSR--IYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVP-----W 177 ++ + SR SFL LDL+A SVP+G +GR NFIN EL+GR + P W Sbjct: 109 GILAALIFSRKKRKKISFLQLLDLIAPSVPLGQAIGRWGNFINQELYGRPTTGPWNLPHW 168 Query: 178 AMVFPDG--------GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAI 229 M FP+ G+LPRHPSQLYE+ EG++ F+I+ L + G G + I Sbjct: 169 PMFFPNPMYIDGAYTGALPRHPSQLYESFLEGIVFFIILFLFRRKPL-LKSGFVFGLYLI 227 Query: 230 CYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVF 275 Y + RFF+EFFREPD LG L+ MG ILSI L+G+ ++ Sbjct: 228 GYGLFRFFIEFFREPDLMLGGLIRIL--MGQILSIPMILLGLWLII 271 >gnl|CDD|36680 KOG1467, KOG1467, KOG1467, Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]. Length = 556 Score = 30.4 bits (68), Expect = 0.60 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 180 VFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFME 239 V SL H Q A T+ + + I ++ G + G +G+ A C ++++ F E Sbjct: 206 VASQKVSLFTHLPQYDRATTQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQE 265 Query: 240 FFREPDYQ 247 + DY Sbjct: 266 VIK--DYT 271 >gnl|CDD|35038 COG5479, COG5479, Uncharacterized protein potentially involved in peptidoglycan biosynthesis [Cell envelope biogenesis, outer membrane]. Length = 556 Score = 29.6 bits (66), Expect = 0.98 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 169 WGRVSWVPWAMVFPDGGSLPRHPSQLYEAITEG 201 WGR W + +P GG +P SQ++ T G Sbjct: 207 WGRAGWEAGPLGYPTGGEVPLGGSQIFVGHTTG 239 >gnl|CDD|35697 KOG0476, KOG0476, KOG0476, Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]. Length = 931 Score = 29.2 bits (65), Expect = 1.5 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%) Query: 103 NSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIAN 162 P HI W G + F +L L + F + + VP G+F + Sbjct: 423 LCPAHILTHWYHP----EGDVSIFGTLVLF---FLMYFWMSIIATTIPVPSGVF---MPV 472 Query: 163 FINGELWGRVSWVPWAMVFPDG 184 F+ G +GR+ A++FP+G Sbjct: 473 FVIGAAFGRLVGEIMAVLFPEG 494 >gnl|CDD|31812 COG1625, COG1625, Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]. Length = 414 Score = 28.7 bits (64), Expect = 2.1 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 5/63 (7%) Query: 208 MQLMVYRGSFKSPGLTAGAFAICY----SVVRFFMEFFREPDYQLGYLLGGWMTM-GMIL 262 L + CY R ++++ D +L + G T+ Sbjct: 70 EDLGLEFEEVLGAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAE 129 Query: 263 SIL 265 I+ Sbjct: 130 RII 132 >gnl|CDD|34930 COG5360, COG5360, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 566 Score = 27.3 bits (60), Expect = 5.5 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 178 AMVFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFF 237 + PDGG + R+P A E L+ L ++ P A +R Sbjct: 226 RQILPDGGHISRNP----RAGLELLLDLLPLRQTYANLGHDPPSALIPAIDRMLPALR-- 279 Query: 238 MEFFREPDYQLGYLLGGWMTM 258 FFR D L G T+ Sbjct: 280 --FFRHQDGSLALFNGATATL 298 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.330 0.146 0.491 Gapped Lambda K H 0.267 0.0797 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,996,963 Number of extensions: 235144 Number of successful extensions: 1024 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1002 Number of HSP's successfully gapped: 106 Length of query: 288 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 195 Effective length of database: 4,254,100 Effective search space: 829549500 Effective search space used: 829549500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 57 (25.6 bits)