RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* (A:) Length = 174 Score = 26.3 bits (58), Expect = 5.1 Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 8/50 (16%) Query: 7 LWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALW 56 L+SI+ P PV A A L + L L Sbjct: 109 LYSIVQXPRGIPVGTLAIGKA-GAANAALLAAQILA-------LHDTELA 150 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.330 0.146 0.491 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,374,860 Number of extensions: 108640 Number of successful extensions: 378 Number of sequences better than 10.0: 1 Number of HSP's gapped: 377 Number of HSP's successfully gapped: 25 Length of query: 288 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 200 Effective length of database: 1,981,209 Effective search space: 396241800 Effective search space used: 396241800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 54 (24.8 bits)