RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (288 letters)



>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
           [TaxId: 274]}
          Length = 426

 Score = 28.3 bits (62), Expect = 0.80
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 1/86 (1%)

Query: 175 VPWAMVFPDG-GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSV 233
           V W  + P+G G +       Y+ + + L+   I   +          L           
Sbjct: 75  VAWPRILPEGRGRINPKGLAFYDRLVDRLLASGITPFLTLYHWDLPLALEERGGWRSRET 134

Query: 234 VRFFMEFFREPDYQLGYLLGGWMTMG 259
              F E+       L   +  + T+ 
Sbjct: 135 AFAFAEYAEAVARALADRVPFFATLN 160


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 106 LHIFFLWEGGMSFHGGLIGAF 126
           L + F+W  GM FHG     +
Sbjct: 68  LAVVFIWLSGMYFHGAKFSNY 88


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 26.0 bits (57), Expect = 4.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 106 LHIFFLWEGGMSFHGGLIGAF 126
           L I FLW  G  FH    G F
Sbjct: 53  LAIIFLWVSGSLFHVAWQGNF 73


>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein
           (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
          Length = 145

 Score = 25.3 bits (55), Expect = 6.4
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 177 WAMVFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRF 236
           + +         R P    E ITE  ++  + +L+      +  G   G F +   ++R 
Sbjct: 76  YNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRP 135

Query: 237 FMEFFRE 243
            ++  R+
Sbjct: 136 VLDPARD 142


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 25.1 bits (55), Expect = 6.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 27  AIRWYGLAYLVGMLFGIWYIQY 48
            +RWY L  +  ML  I  +++
Sbjct: 263 GLRWYALPAVSNMLLEIGGLEF 284


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 24.7 bits (54), Expect = 9.0
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 28  IRWYGLAYLVGMLFGIWYIQY 48
           ++WY L  +  ML  +  +++
Sbjct: 262 LKWYALPAVANMLLEVGGLEF 282


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 24.7 bits (54), Expect = 9.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 28  IRWYGLAYLVGMLFGIWYIQY 48
           ++WYGL  +  ML  I  +++
Sbjct: 261 LKWYGLPAVSNMLLEIGGLEF 281


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.146    0.491 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,162,071
Number of extensions: 55268
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 38
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.1 bits)