BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (288 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 288

 Score =  577 bits (1486), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MEREYMLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQ 60
           MEREYMLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQ
Sbjct: 1   MEREYMLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQ 60

Query: 61  NNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHG 120
           NNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHG
Sbjct: 61  NNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHG 120

Query: 121 GLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMV 180
           GLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMV
Sbjct: 121 GLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMV 180

Query: 181 FPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEF 240
           FPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEF
Sbjct: 181 FPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEF 240

Query: 241 FREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSSFGK 288
           FREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSSFGK
Sbjct: 241 FREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSSFGK 288


>gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 281

 Score = 25.0 bits (53), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 227 FAICYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLV 269
           F I + ++   +E F E D   G+ +   +++  +LS+ PF+V
Sbjct: 5   FCIVFDIIYDAIEHFVEED---GWAMASHISLSALLSVFPFIV 44


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 23.1 bits (48), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 54  ALWTEKQNNENLVYKE 69
           ++WT+ +N EN+ Y +
Sbjct: 194 SVWTKNENGENIAYPD 209


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.146    0.491 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,893
Number of Sequences: 1233
Number of extensions: 8758
Number of successful extensions: 25
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 288
length of database: 328,796
effective HSP length: 73
effective length of query: 215
effective length of database: 238,787
effective search space: 51339205
effective search space used: 51339205
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 38 (19.2 bits)