BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62] (288 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 288 Score = 577 bits (1486), Expect = e-166, Method: Compositional matrix adjust. Identities = 288/288 (100%), Positives = 288/288 (100%) Query: 1 MEREYMLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQ 60 MEREYMLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQ Sbjct: 1 MEREYMLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQ 60 Query: 61 NNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHG 120 NNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHG Sbjct: 61 NNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHG 120 Query: 121 GLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMV 180 GLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMV Sbjct: 121 GLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMV 180 Query: 181 FPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEF 240 FPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEF Sbjct: 181 FPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEF 240 Query: 241 FREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSSFGK 288 FREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSSFGK Sbjct: 241 FREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSSFGK 288 >gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 227 FAICYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLV 269 F I + ++ +E F E D G+ + +++ +LS+ PF+V Sbjct: 5 FCIVFDIIYDAIEHFVEED---GWAMASHISLSALLSVFPFIV 44 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 23.1 bits (48), Expect = 6.5, Method: Composition-based stats. Identities = 6/16 (37%), Positives = 12/16 (75%) Query: 54 ALWTEKQNNENLVYKE 69 ++WT+ +N EN+ Y + Sbjct: 194 SVWTKNENGENIAYPD 209 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.146 0.491 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 200,893 Number of Sequences: 1233 Number of extensions: 8758 Number of successful extensions: 25 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 9 length of query: 288 length of database: 328,796 effective HSP length: 73 effective length of query: 215 effective length of database: 238,787 effective search space: 51339205 effective search space used: 51339205 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 38 (19.2 bits)