Query gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 94 No_of_seqs 106 out of 392 Neff 5.2 Searched_HMMs 33803 Date Wed Jun 1 12:47:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780412.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2pnv_A Small conductance calc 91.7 0.5 1.5E-05 27.2 5.8 36 54-89 5-40 (43) 2 >1dip_A Delta-sleep-inducing p 82.5 1.3 3.9E-05 24.5 3.3 36 48-90 11-46 (77) 3 >3h5g_A Coil Ser L16D-PEN; DE- 78.1 2.9 8.6E-05 22.3 3.9 22 64-85 7-28 (31) 4 >1u0i_A IAAL-E3; coiled-coil, 74.3 2.5 7.3E-05 22.8 2.7 21 67-87 2-22 (26) 5 >1g6u_A Domain swapped dimer; 69.8 5.5 0.00016 20.5 3.6 30 48-84 17-46 (48) 6 >1m1j_A Fibrinogen alpha subun 63.3 12 0.00035 18.5 6.0 38 53-90 2-39 (373) 7 >1aq5_A Matrilin-1, CMP, carti 62.4 12 0.00036 18.4 4.5 23 59-81 24-46 (47) 8 >3hrn_A Transient receptor pot 61.1 13 0.00038 18.2 6.8 39 48-86 3-41 (64) 9 >3ghg_A Fibrinogen alpha chain 52.9 17 0.00052 17.4 4.2 33 58-90 3-35 (455) 10 >2k48_A Nucleoprotein; viral p 42.5 25 0.00075 16.4 5.3 64 20-86 34-103 (107) 11 >3ioz_B T-cell surface glycopr 41.1 15 0.00046 17.7 1.9 19 39-57 21-39 (45) 12 >2fzt_A Hypothetical protein T 41.0 27 0.00079 16.2 6.0 37 49-85 29-71 (79) 13 >2ic6_A Nucleocapsid protein; 36.2 32 0.00094 15.7 5.3 37 50-86 37-73 (78) 14 >2v4h_A NF-kappa-B essential m 35.7 32 0.00095 15.7 3.6 36 49-84 74-109 (110) 15 >2ic9_A Nucleocapsid protein; 31.5 38 0.0011 15.3 5.3 38 50-87 37-74 (96) 16 >3ci9_A Heat shock factor-bind 28.5 42 0.0012 15.0 2.5 17 65-81 31-47 (48) 17 >2er8_A Regulatory protein Leu 25.8 46 0.0014 14.7 2.3 22 63-84 47-68 (72) 18 >2w83_C C-JUN-amino-terminal k 24.7 50 0.0015 14.5 5.5 62 23-87 4-73 (77) 19 >1r48_A Proline/betaine transp 24.3 50 0.0015 14.5 3.3 21 64-84 7-27 (33) 20 >3iv1_A Tumor susceptibility g 23.3 53 0.0016 14.3 6.8 67 23-89 5-77 (78) 21 >1zme_C Proline utilization tr 23.2 53 0.0016 14.3 4.1 27 64-90 43-69 (70) 22 >1y2m_A Phenylalanine ammonia- 23.2 53 0.0016 14.3 2.5 48 9-56 7-59 (109) 23 >1t3j_A Mitofusin 1; coiled co 22.6 54 0.0016 14.3 4.1 28 64-91 53-80 (96) 24 >3i1g_A General control protei 22.3 55 0.0016 14.2 4.0 28 63-90 5-32 (33) 25 >1ses_A Seryl-tRNA synthetase; 21.7 57 0.0017 14.1 8.7 52 34-85 23-74 (83) No 1 >>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} (A:) Probab=91.71 E-value=0.5 Score=27.17 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999650 Q gi|254780412|r 54 ENVKRTTSHLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 54 dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) .+.-++..-..++.+.||+||..||.||..+-+-+. T Consensus 5 nvMYdlvSeL~~rsEdlEkri~~LE~kle~L~aslq 40 (43) T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999998758999999999999999988874 No 2 >>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} (A:) Probab=82.50 E-value=1.3 Score=24.51 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=27.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5699999999999999999999999999999999999996500 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) --|||.|+++ ++|..|+.|+..||..=+-|+.+..+ T Consensus 11 AVrEEVevLk-------e~I~eL~~~~~~Le~EN~~Lk~~asp 46 (77) T 1dip_A 11 AVREEVEILK-------EQIRELVEKNSQLERENTLLKTLASP 46 (77) T ss_dssp TCTTSCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSS T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 9999999999-------99999999999999999999951899 No 3 >>3h5g_A Coil Ser L16D-PEN; DE-NOVO protein, parallel three-stranded coiled coil, D- penicillamine, de novo protein; 1.71A {Synthetic} PDB: 3h5f_A 1cos_A 2jgo_A 1coi_A (A:) Probab=78.10 E-value=2.9 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADLE 85 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~le 85 (94) ..++.+||.+..+||++|..+| T Consensus 7 ekklaalesk~qalekkleale 28 (31) T 3h5g_A 7 EKKLAALESKXQALEKKLEALE 28 (31) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999878999999999877 No 4 >>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:) Probab=74.35 E-value=2.5 Score=22.78 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999996 Q gi|254780412|r 67 ITAIGKRLEKIEQQLADLELF 87 (94) Q Consensus 67 ~e~Le~rl~~LE~kl~~le~~ 87 (94) +.+||+.|++||+.++.+|-. T Consensus 2 iaalekeiaalekeiaalek~ 22 (26) T 1u0i_A 2 IAALEKEIAALEKEIAALEKX 22 (26) T ss_dssp HHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 178999999999999999862 No 5 >>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} (A:) Probab=69.79 E-value=5.5 Score=20.55 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=17.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5699999999999999999999999999999999999 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) .+-||.-++ ..++.+||+++++|..+|..+ T Consensus 17 fspeelaal-------eselqalekklaalksklqal 46 (48) T 1g6u_A 17 FSPEELAAL-------ESELQALEKKLAALKSKLQAL 46 (48) T ss_dssp CSHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999988-------999999999999999999875 No 6 >>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491) Probab=63.32 E-value=12 Score=18.49 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999996500 Q gi|254780412|r 53 IENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 53 Fdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) ++.+++.+....+++..|++.+...+..+.+.+..++. T Consensus 2 ~~~lk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (373) T 1m1j_A 2 IVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 39 (373) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999 No 7 >>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} (A:) Probab=62.35 E-value=12 Score=18.38 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254780412|r 59 TTSHLREEITAIGKRLEKIEQQL 81 (94) Q Consensus 59 ~l~k~R~~~e~Le~rl~~LE~kl 81 (94) .+.+.-.+++++-+|++.||++| T Consensus 24 ~lq~LtqkL~~vt~RLe~LEn~l 46 (47) T 1aq5_A 24 LINTLQQKLEAVAKRIEALENKI 46 (47) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999998603 No 8 >>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A (A:) Probab=61.14 E-value=13 Score=18.24 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=27.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 569999999999999999999999999999999999999 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) |+.|||.++..-..+.-.-+-..-.+|+++-.||...|- T Consensus 3 Vs~eEf~vL~rRVdr~EhSIgSIvSKIDav~vKLE~mer 41 (64) T 3hrn_A 3 VSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMER 41 (64) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 669999999999999998882899999999999998899 No 9 >>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* (A:108-562) Probab=52.87 E-value=17 Score=17.38 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999996500 Q gi|254780412|r 58 RTTSHLREEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 58 ~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) +++++.|.|+++|+.++.+.+.++...+..+.+ T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~q~~~~~~~~~~ 35 (455) T 3ghg_A 3 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRA 35 (455) T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 10 >>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} (A:) Probab=42.47 E-value=25 Score=16.36 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=41.7 Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88877999999999------99999999987398569999999999999999999999999999999999999 Q gi|254780412|r 20 SDAFKDISKEAESF------AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 20 ~~~~~~~~~Eie~~------~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) ++.+..+.+|+-.. .|..+..+=.. |-++.=|+-+..+.+-+..+.+|+.+|+.|..+++++=+ T Consensus 34 Ms~leelQ~Eit~hE~QLviArQKLkDAeka---~E~DPDdvNK~tl~~Rq~~VsaLq~KiaelKRqlAD~V~ 103 (107) T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKA---VEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8789999999999999999999999999999---883903664899999999999999999999999998998 No 11 >>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membrane, myristate, viral immunoevasion; 3.70A {Homo sapiens} (B:) Probab=41.10 E-value=15 Score=17.71 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.0 Q ss_pred HHHHHHCCCCCHHHHHHHH Q ss_conf 9999873985699999999 Q gi|254780412|r 39 QRTLNSMGVVRAEEIENVK 57 (94) Q Consensus 39 e~~l~kldLVtREEFdv~~ 57 (94) ....+.+++-.||||||+- T Consensus 21 nqlYNELn~grREEYdvLd 39 (45) T 3ioz_B 21 NQLYNELNLGRREEYDVLD 39 (45) T ss_pred HHHHHHHCCCCHHHHHHHH T ss_conf 6787774225047888886 No 12 >>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.05A {Thermotoga maritima MSB8} (A:) Probab=41.00 E-value=27 Score=16.21 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=31.5 Q ss_pred CHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999------99999999999999999999999999999999 Q gi|254780412|r 49 RAEEI------ENVKRTTSHLREEITAIGKRLEKIEQQLADLE 85 (94) Q Consensus 49 tREEF------dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le 85 (94) .|+|| |.+..++.|-|.+++-.++|.+.|-..+..+- T Consensus 29 kReellk~LpkekLseilEkDr~RleiIekrk~sLfqe~~~lR 71 (79) T 2fzt_A 29 KRKELXEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIR 71 (79) T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999987783989999999868999999999999999998898 No 13 >>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus} (A:) Probab=36.18 E-value=32 Score=15.74 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999 Q gi|254780412|r 50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 50 REEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) ++.=|+-+..+.+-+..+.+|+.+|+.|..+++++=. T Consensus 37 ~DPDevNK~tl~~R~~~Vs~le~KiaelKr~lAd~v~ 73 (78) T 2ic6_A 37 LDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78) T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5904765888999999999999999999999886997 No 14 >>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, phosphoprotein, zinc, nucleus, cytoplasm, zinc-finger, coiled coil; 2.9A {Mus musculus} (A:) Probab=35.74 E-value=32 Score=15.70 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=20.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 699999999999999999999999999999999999 Q gi|254780412|r 49 RAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 49 tREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) .+.+++....-+.++..++..|...+..|+..+..| T Consensus 74 ~~~e~~~~~~e~~~~~~e~~~l~~~~~~l~~~~~~L 109 (110) T 2v4h_A 74 YKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 998999999999999999999999999999998753 No 15 >>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus} (A:) Probab=31.54 E-value=38 Score=15.27 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999996 Q gi|254780412|r 50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELF 87 (94) Q Consensus 50 REEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~ 87 (94) ++-=|+-+..+.+-+..+.+|+.+|+.|..+++++=.. T Consensus 37 ~DPDdvNK~tl~~R~~~Vs~lq~KiaelKrqlAd~v~~ 74 (96) T 2ic9_A 37 LDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (96) T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 39276728999999999999999999999999999985 No 16 >>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} (A:) Probab=28.49 E-value=42 Score=14.96 Aligned_cols=17 Identities=18% Similarity=0.558 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780412|r 65 EEITAIGKRLEKIEQQL 81 (94) Q Consensus 65 ~~~e~Le~rl~~LE~kl 81 (94) .|++..-.||+.||+-+ T Consensus 31 ~riDdM~~RiDdLEksi 47 (48) T 3ci9_A 31 GRIDDMSSRIDDLEKNI 47 (48) T ss_dssp HHHHHHHHHHHTTC--- T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999883688897653 No 17 >>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A (A:) Probab=25.85 E-value=46 Score=14.72 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780412|r 63 LREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 63 ~R~~~e~Le~rl~~LE~kl~~l 84 (94) .+..++.|+.+|..||..|..+ T Consensus 47 ~~~~~~~l~~~~~~le~~l~~~ 68 (72) T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72) T ss_dssp HHHHHHHHHHHHHHHHHHHHCC T ss_pred CHHHHHHHHHHHHHHHHHHHHH T ss_conf 7258999999999999999987 No 18 >>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} (C:) Probab=24.69 E-value=50 Score=14.51 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77999999999999999--999873985699------999999999999999999999999999999999996 Q gi|254780412|r 23 FKDISKEAESFAQIKIQ--RTLNSMGVVRAE------EIENVKRTTSHLREEITAIGKRLEKIEQQLADLELF 87 (94) Q Consensus 23 ~~~~~~Eie~~~r~~~e--~~l~kldLVtRE------EFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~ 87 (94) ..|+++|+++.++.--+ ..=|.++.|.-+ |.--.+.+ .++++.+|..--..|+.+++++|-- T Consensus 4 ~~GMgkEVenLi~EN~eLl~tKNALNiVKnDLI~kvDeLt~E~e~---l~~El~al~~~k~rl~~ri~elEee 73 (77) T 2w83_C 4 PEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDV---LQGELEAVKQAKLKLEEKNRELEEE 73 (77) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC------ T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 688889999999987999998989998898999999997216999---9999999999999999999999998 No 19 >>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} (A:) Probab=24.34 E-value=50 Score=14.46 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~l 84 (94) -.+++.+..+|++||+|=..| T Consensus 7 EQKIedId~qIaeLe~KR~~L 27 (33) T 1r48_A 7 EQKIDDIDHEIADLQAKRTRL 27 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 998987999999999999999 No 20 >>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} (A:) Probab=23.26 E-value=53 Score=14.33 Aligned_cols=67 Identities=12% Similarity=0.275 Sum_probs=38.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77999999999999999999873985699999------99999999999999999999999999999999650 Q gi|254780412|r 23 FKDISKEAESFAQIKIQRTLNSMGVVRAEEIE------NVKRTTSHLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 23 ~~~~~~Eie~~~r~~~e~~l~kldLVtREEFd------v~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) ...+-+-+..-+|..+...-+.++-..|-.=| -+..|+.+...+...|++-|..|..|..+++-.+. T Consensus 5 lSAVeDKLrrrlkE~~~q~qaEl~sL~~t~~eL~~G~~kL~~~i~kl~~E~~~l~~ni~~Lk~K~~ELe~~~~ 77 (78) T 3iv1_A 5 ISAVSDKLRWRXKEEXDRAQAELNALKRTEEDLKKGHQKLEEXVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9998999999999999988679999999999998256889999999998899999899999868999997753 No 21 >>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} (C:) Probab=23.24 E-value=53 Score=14.33 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999996500 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) ...+..++.++..||..|..+...++. T Consensus 43 ~~~~~~~~~~~~~le~~l~~l~~~~~~ 69 (70) T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999855 No 22 >>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* (A:546-654) Probab=23.20 E-value=53 Score=14.32 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCH--HHHHHH Q ss_conf 9999999986688877999999999999999999---87398569--999999 Q gi|254780412|r 9 FQQASRLASCASDAFKDISKEAESFAQIKIQRTL---NSMGVVRA--EEIENV 56 (94) Q Consensus 9 ~ddla~~~~~a~~~~~~~~~Eie~~~r~~~e~~l---~kldLVtR--EEFdv~ 56 (94) +-.+-+.--|++.+...+++|++..++--+-+-+ |..|||.| +-|-+- T Consensus 7 i~~l~~qhfg~~at~snlrde~~~kv~kt~~krl~q~nsydl~~rwhd~fs~a 59 (109) T 1y2m_A 7 IVSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQTNSYDLVPRWHDAFSFA 59 (109) T ss_dssp HHHHHHHHHTTTTTTSSHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999998167887310147888889999998884035533588899989986 No 23 >>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} (A:) Probab=22.61 E-value=54 Score=14.25 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999965002 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADLELFINQK 91 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~le~~~~~k 91 (94) -+++..|.++|..||.--...+++-||- T Consensus 53 eeEI~~L~~eI~~LE~iqs~aK~LRNKA 80 (96) T 1t3j_A 53 EEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999998789 No 24 >>3i1g_A General control protein GCN4; leucine zipper, peptide, synthetic peptide, helix, double helix, activator, amino-acid biosynthesis, DNA- binding; 1.60A {Synthetic} PDB: 2ahp_A* 2o7h_A (A:) Probab=22.31 E-value=55 Score=14.21 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999996500 Q gi|254780412|r 63 LREEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 63 ~R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) .-.++++|=.|...||+.++.+..+++. T Consensus 5 lEdkveElL~kn~~lEnEvarlk~lige 32 (33) T 3i1g_A 5 LEAKVEELLSKNWNLENEVARLKKLVGE 32 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8999999999887688899999998567 No 25 >>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107) Probab=21.69 E-value=57 Score=14.14 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=38.4 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998739856999999999999999999999999999999999999 Q gi|254780412|r 34 AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLE 85 (94) Q Consensus 34 ~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le 85 (94) +++.....-...+=...++.+.+.+-+...+.++..|+.++..++..+..+= T Consensus 23 l~~~rn~~sk~I~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~~~~~~~~l 74 (83) T 1ses_A 23 VQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 74 (83) T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999975325154899999999999999998867999988776653 Done!