Query         gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs    106 out of 392
Neff          5.2 
Searched_HMMs 33803
Date          Wed Jun  1 12:47:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780412.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2pnv_A Small conductance calc  91.7     0.5 1.5E-05   27.2   5.8   36   54-89      5-40  (43)
  2 >1dip_A Delta-sleep-inducing p  82.5     1.3 3.9E-05   24.5   3.3   36   48-90     11-46  (77)
  3 >3h5g_A Coil Ser L16D-PEN; DE-  78.1     2.9 8.6E-05   22.3   3.9   22   64-85      7-28  (31)
  4 >1u0i_A IAAL-E3; coiled-coil,   74.3     2.5 7.3E-05   22.8   2.7   21   67-87      2-22  (26)
  5 >1g6u_A Domain swapped dimer;   69.8     5.5 0.00016   20.5   3.6   30   48-84     17-46  (48)
  6 >1m1j_A Fibrinogen alpha subun  63.3      12 0.00035   18.5   6.0   38   53-90      2-39  (373)
  7 >1aq5_A Matrilin-1, CMP, carti  62.4      12 0.00036   18.4   4.5   23   59-81     24-46  (47)
  8 >3hrn_A Transient receptor pot  61.1      13 0.00038   18.2   6.8   39   48-86      3-41  (64)
  9 >3ghg_A Fibrinogen alpha chain  52.9      17 0.00052   17.4   4.2   33   58-90      3-35  (455)
 10 >2k48_A Nucleoprotein; viral p  42.5      25 0.00075   16.4   5.3   64   20-86     34-103 (107)
 11 >3ioz_B T-cell surface glycopr  41.1      15 0.00046   17.7   1.9   19   39-57     21-39  (45)
 12 >2fzt_A Hypothetical protein T  41.0      27 0.00079   16.2   6.0   37   49-85     29-71  (79)
 13 >2ic6_A Nucleocapsid protein;   36.2      32 0.00094   15.7   5.3   37   50-86     37-73  (78)
 14 >2v4h_A NF-kappa-B essential m  35.7      32 0.00095   15.7   3.6   36   49-84     74-109 (110)
 15 >2ic9_A Nucleocapsid protein;   31.5      38  0.0011   15.3   5.3   38   50-87     37-74  (96)
 16 >3ci9_A Heat shock factor-bind  28.5      42  0.0012   15.0   2.5   17   65-81     31-47  (48)
 17 >2er8_A Regulatory protein Leu  25.8      46  0.0014   14.7   2.3   22   63-84     47-68  (72)
 18 >2w83_C C-JUN-amino-terminal k  24.7      50  0.0015   14.5   5.5   62   23-87      4-73  (77)
 19 >1r48_A Proline/betaine transp  24.3      50  0.0015   14.5   3.3   21   64-84      7-27  (33)
 20 >3iv1_A Tumor susceptibility g  23.3      53  0.0016   14.3   6.8   67   23-89      5-77  (78)
 21 >1zme_C Proline utilization tr  23.2      53  0.0016   14.3   4.1   27   64-90     43-69  (70)
 22 >1y2m_A Phenylalanine ammonia-  23.2      53  0.0016   14.3   2.5   48    9-56      7-59  (109)
 23 >1t3j_A Mitofusin 1; coiled co  22.6      54  0.0016   14.3   4.1   28   64-91     53-80  (96)
 24 >3i1g_A General control protei  22.3      55  0.0016   14.2   4.0   28   63-90      5-32  (33)
 25 >1ses_A Seryl-tRNA synthetase;  21.7      57  0.0017   14.1   8.7   52   34-85     23-74  (83)

No 1  
>>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} (A:)
Probab=91.71  E-value=0.5  Score=27.17  Aligned_cols=36  Identities=25%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999650
Q gi|254780412|r   54 ENVKRTTSHLREEITAIGKRLEKIEQQLADLELFIN   89 (94)
Q Consensus        54 dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~   89 (94)
                      .+.-++..-..++.+.||+||..||.||..+-+-+.
T Consensus         5 nvMYdlvSeL~~rsEdlEkri~~LE~kle~L~aslq   40 (43)
T 2pnv_A            5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH   40 (43)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             799999999998758999999999999999988874


No 2  
>>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} (A:)
Probab=82.50  E-value=1.3  Score=24.51  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5699999999999999999999999999999999999996500
Q gi|254780412|r   48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQ   90 (94)
Q Consensus        48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~   90 (94)
                      --|||.|+++       ++|..|+.|+..||..=+-|+.+..+
T Consensus        11 AVrEEVevLk-------e~I~eL~~~~~~Le~EN~~Lk~~asp   46 (77)
T 1dip_A           11 AVREEVEILK-------EQIRELVEKNSQLERENTLLKTLASP   46 (77)
T ss_dssp             TCTTSCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             9999999999-------99999999999999999999951899


No 3  
>>3h5g_A Coil Ser L16D-PEN; DE-NOVO protein, parallel three-stranded coiled coil, D- penicillamine, de novo protein; 1.71A {Synthetic} PDB: 3h5f_A 1cos_A 2jgo_A 1coi_A (A:)
Probab=78.10  E-value=2.9  Score=22.31  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254780412|r   64 REEITAIGKRLEKIEQQLADLE   85 (94)
Q Consensus        64 R~~~e~Le~rl~~LE~kl~~le   85 (94)
                      ..++.+||.+..+||++|..+|
T Consensus         7 ekklaalesk~qalekkleale   28 (31)
T 3h5g_A            7 EKKLAALESKXQALEKKLEALE   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999878999999999877


No 4  
>>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:)
Probab=74.35  E-value=2.5  Score=22.78  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999996
Q gi|254780412|r   67 ITAIGKRLEKIEQQLADLELF   87 (94)
Q Consensus        67 ~e~Le~rl~~LE~kl~~le~~   87 (94)
                      +.+||+.|++||+.++.+|-.
T Consensus         2 iaalekeiaalekeiaalek~   22 (26)
T 1u0i_A            2 IAALEKEIAALEKEIAALEKX   22 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             178999999999999999862


No 5  
>>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} (A:)
Probab=69.79  E-value=5.5  Score=20.55  Aligned_cols=30  Identities=27%  Similarity=0.510  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5699999999999999999999999999999999999
Q gi|254780412|r   48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      .+-||.-++       ..++.+||+++++|..+|..+
T Consensus        17 fspeelaal-------eselqalekklaalksklqal   46 (48)
T 1g6u_A           17 FSPEELAAL-------ESELQALEKKLAALKSKLQAL   46 (48)
T ss_dssp             CSHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999988-------999999999999999999875


No 6  
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=63.32  E-value=12  Score=18.49  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999996500
Q gi|254780412|r   53 IENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQ   90 (94)
Q Consensus        53 Fdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~   90 (94)
                      ++.+++.+....+++..|++.+...+..+.+.+..++.
T Consensus         2 ~~~lk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   39 (373)
T 1m1j_A            2 IVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI   39 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999


No 7  
>>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} (A:)
Probab=62.35  E-value=12  Score=18.38  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254780412|r   59 TTSHLREEITAIGKRLEKIEQQL   81 (94)
Q Consensus        59 ~l~k~R~~~e~Le~rl~~LE~kl   81 (94)
                      .+.+.-.+++++-+|++.||++|
T Consensus        24 ~lq~LtqkL~~vt~RLe~LEn~l   46 (47)
T 1aq5_A           24 LINTLQQKLEAVAKRIEALENKI   46 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999998603


No 8  
>>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A (A:)
Probab=61.14  E-value=13  Score=18.24  Aligned_cols=39  Identities=21%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             569999999999999999999999999999999999999
Q gi|254780412|r   48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL   86 (94)
Q Consensus        48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~   86 (94)
                      |+.|||.++..-..+.-.-+-..-.+|+++-.||...|-
T Consensus         3 Vs~eEf~vL~rRVdr~EhSIgSIvSKIDav~vKLE~mer   41 (64)
T 3hrn_A            3 VSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMER   41 (64)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             669999999999999998882899999999999998899


No 9  
>>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* (A:108-562)
Probab=52.87  E-value=17  Score=17.38  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999996500
Q gi|254780412|r   58 RTTSHLREEITAIGKRLEKIEQQLADLELFINQ   90 (94)
Q Consensus        58 ~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~   90 (94)
                      +++++.|.|+++|+.++.+.+.++...+..+.+
T Consensus         3 ~~~~~l~~~~~~~~~~~~~~~~q~~~~~~~~~~   35 (455)
T 3ghg_A            3 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRA   35 (455)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 10 
>>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} (A:)
Probab=42.47  E-value=25  Score=16.36  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHH------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88877999999999------99999999987398569999999999999999999999999999999999999
Q gi|254780412|r   20 SDAFKDISKEAESF------AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL   86 (94)
Q Consensus        20 ~~~~~~~~~Eie~~------~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~   86 (94)
                      ++.+..+.+|+-..      .|..+..+=..   |-++.=|+-+..+.+-+..+.+|+.+|+.|..+++++=+
T Consensus        34 Ms~leelQ~Eit~hE~QLviArQKLkDAeka---~E~DPDdvNK~tl~~Rq~~VsaLq~KiaelKRqlAD~V~  103 (107)
T 2k48_A           34 MSTLQELQENITAHEQQLVTARQKLKDAEKA---VEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8789999999999999999999999999999---883903664899999999999999999999999998998


No 11 
>>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membrane, myristate, viral immunoevasion; 3.70A {Homo sapiens} (B:)
Probab=41.10  E-value=15  Score=17.71  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=16.0

Q ss_pred             HHHHHHCCCCCHHHHHHHH
Q ss_conf             9999873985699999999
Q gi|254780412|r   39 QRTLNSMGVVRAEEIENVK   57 (94)
Q Consensus        39 e~~l~kldLVtREEFdv~~   57 (94)
                      ....+.+++-.||||||+-
T Consensus        21 nqlYNELn~grREEYdvLd   39 (45)
T 3ioz_B           21 NQLYNELNLGRREEYDVLD   39 (45)
T ss_pred             HHHHHHHCCCCHHHHHHHH
T ss_conf             6787774225047888886


No 12 
>>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.05A {Thermotoga maritima MSB8} (A:)
Probab=41.00  E-value=27  Score=16.21  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             CHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69999------99999999999999999999999999999999
Q gi|254780412|r   49 RAEEI------ENVKRTTSHLREEITAIGKRLEKIEQQLADLE   85 (94)
Q Consensus        49 tREEF------dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le   85 (94)
                      .|+||      |.+..++.|-|.+++-.++|.+.|-..+..+-
T Consensus        29 kReellk~LpkekLseilEkDr~RleiIekrk~sLfqe~~~lR   71 (79)
T 2fzt_A           29 KRKELXEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIR   71 (79)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999987783989999999868999999999999999998898


No 13 
>>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus} (A:)
Probab=36.18  E-value=32  Score=15.74  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999
Q gi|254780412|r   50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL   86 (94)
Q Consensus        50 REEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~   86 (94)
                      ++.=|+-+..+.+-+..+.+|+.+|+.|..+++++=.
T Consensus        37 ~DPDevNK~tl~~R~~~Vs~le~KiaelKr~lAd~v~   73 (78)
T 2ic6_A           37 LDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA   73 (78)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5904765888999999999999999999999886997


No 14 
>>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, phosphoprotein, zinc, nucleus, cytoplasm, zinc-finger, coiled coil; 2.9A {Mus musculus} (A:)
Probab=35.74  E-value=32  Score=15.70  Aligned_cols=36  Identities=14%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             699999999999999999999999999999999999
Q gi|254780412|r   49 RAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        49 tREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      .+.+++....-+.++..++..|...+..|+..+..|
T Consensus        74 ~~~e~~~~~~e~~~~~~e~~~l~~~~~~l~~~~~~L  109 (110)
T 2v4h_A           74 YKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998999999999999999999999999999998753


No 15 
>>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus} (A:)
Probab=31.54  E-value=38  Score=15.27  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999996
Q gi|254780412|r   50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELF   87 (94)
Q Consensus        50 REEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~   87 (94)
                      ++-=|+-+..+.+-+..+.+|+.+|+.|..+++++=..
T Consensus        37 ~DPDdvNK~tl~~R~~~Vs~lq~KiaelKrqlAd~v~~   74 (96)
T 2ic9_A           37 LDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA   74 (96)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             39276728999999999999999999999999999985


No 16 
>>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} (A:)
Probab=28.49  E-value=42  Score=14.96  Aligned_cols=17  Identities=18%  Similarity=0.558  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780412|r   65 EEITAIGKRLEKIEQQL   81 (94)
Q Consensus        65 ~~~e~Le~rl~~LE~kl   81 (94)
                      .|++..-.||+.||+-+
T Consensus        31 ~riDdM~~RiDdLEksi   47 (48)
T 3ci9_A           31 GRIDDMSSRIDDLEKNI   47 (48)
T ss_dssp             HHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999883688897653


No 17 
>>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A (A:)
Probab=25.85  E-value=46  Score=14.72  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254780412|r   63 LREEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        63 ~R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      .+..++.|+.+|..||..|..+
T Consensus        47 ~~~~~~~l~~~~~~le~~l~~~   68 (72)
T 2er8_A           47 KRARNEAIEKRFKELTRTLTNL   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7258999999999999999987


No 18 
>>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} (C:)
Probab=24.69  E-value=50  Score=14.51  Aligned_cols=62  Identities=24%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77999999999999999--999873985699------999999999999999999999999999999999996
Q gi|254780412|r   23 FKDISKEAESFAQIKIQ--RTLNSMGVVRAE------EIENVKRTTSHLREEITAIGKRLEKIEQQLADLELF   87 (94)
Q Consensus        23 ~~~~~~Eie~~~r~~~e--~~l~kldLVtRE------EFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~   87 (94)
                      ..|+++|+++.++.--+  ..=|.++.|.-+      |.--.+.+   .++++.+|..--..|+.+++++|--
T Consensus         4 ~~GMgkEVenLi~EN~eLl~tKNALNiVKnDLI~kvDeLt~E~e~---l~~El~al~~~k~rl~~ri~elEee   73 (77)
T 2w83_C            4 PEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDV---LQGELEAVKQAKLKLEEKNRELEEE   73 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             688889999999987999998989998898999999997216999---9999999999999999999999998


No 19 
>>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} (A:)
Probab=24.34  E-value=50  Score=14.46  Aligned_cols=21  Identities=14%  Similarity=0.371  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254780412|r   64 REEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        64 R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      -.+++.+..+|++||+|=..|
T Consensus         7 EQKIedId~qIaeLe~KR~~L   27 (33)
T 1r48_A            7 EQKIDDIDHEIADLQAKRTRL   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             998987999999999999999


No 20 
>>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} (A:)
Probab=23.26  E-value=53  Score=14.33  Aligned_cols=67  Identities=12%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77999999999999999999873985699999------99999999999999999999999999999999650
Q gi|254780412|r   23 FKDISKEAESFAQIKIQRTLNSMGVVRAEEIE------NVKRTTSHLREEITAIGKRLEKIEQQLADLELFIN   89 (94)
Q Consensus        23 ~~~~~~Eie~~~r~~~e~~l~kldLVtREEFd------v~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~   89 (94)
                      ...+-+-+..-+|..+...-+.++-..|-.=|      -+..|+.+...+...|++-|..|..|..+++-.+.
T Consensus         5 lSAVeDKLrrrlkE~~~q~qaEl~sL~~t~~eL~~G~~kL~~~i~kl~~E~~~l~~ni~~Lk~K~~ELe~~~~   77 (78)
T 3iv1_A            5 ISAVSDKLRWRXKEEXDRAQAELNALKRTEEDLKKGHQKLEEXVTRLDQEVAEVDKNIELLKKKDEELSSALE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9998999999999999988679999999999998256889999999998899999899999868999997753


No 21 
>>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} (C:)
Probab=23.24  E-value=53  Score=14.33  Aligned_cols=27  Identities=11%  Similarity=0.201  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999996500
Q gi|254780412|r   64 REEITAIGKRLEKIEQQLADLELFINQ   90 (94)
Q Consensus        64 R~~~e~Le~rl~~LE~kl~~le~~~~~   90 (94)
                      ...+..++.++..||..|..+...++.
T Consensus        43 ~~~~~~~~~~~~~le~~l~~l~~~~~~   69 (70)
T 1zme_C           43 TKYLQQLQKDLNDKTEENNRLKALLLE   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999855


No 22 
>>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* (A:546-654)
Probab=23.20  E-value=53  Score=14.32  Aligned_cols=48  Identities=10%  Similarity=0.058  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCH--HHHHHH
Q ss_conf             9999999986688877999999999999999999---87398569--999999
Q gi|254780412|r    9 FQQASRLASCASDAFKDISKEAESFAQIKIQRTL---NSMGVVRA--EEIENV   56 (94)
Q Consensus         9 ~ddla~~~~~a~~~~~~~~~Eie~~~r~~~e~~l---~kldLVtR--EEFdv~   56 (94)
                      +-.+-+.--|++.+...+++|++..++--+-+-+   |..|||.|  +-|-+-
T Consensus         7 i~~l~~qhfg~~at~snlrde~~~kv~kt~~krl~q~nsydl~~rwhd~fs~a   59 (109)
T 1y2m_A            7 IVSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQTNSYDLVPRWHDAFSFA   59 (109)
T ss_dssp             HHHHHHHHHTTTTTTSSHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999998167887310147888889999998884035533588899989986


No 23 
>>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} (A:)
Probab=22.61  E-value=54  Score=14.25  Aligned_cols=28  Identities=25%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999965002
Q gi|254780412|r   64 REEITAIGKRLEKIEQQLADLELFINQK   91 (94)
Q Consensus        64 R~~~e~Le~rl~~LE~kl~~le~~~~~k   91 (94)
                      -+++..|.++|..||.--...+++-||-
T Consensus        53 eeEI~~L~~eI~~LE~iqs~aK~LRNKA   80 (96)
T 1t3j_A           53 EEEIARLSKEIDQLEKMQNNSKLLRNKA   80 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999998789


No 24 
>>3i1g_A General control protein GCN4; leucine zipper, peptide, synthetic peptide, helix, double helix, activator, amino-acid biosynthesis, DNA- binding; 1.60A {Synthetic} PDB: 2ahp_A* 2o7h_A (A:)
Probab=22.31  E-value=55  Score=14.21  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999996500
Q gi|254780412|r   63 LREEITAIGKRLEKIEQQLADLELFINQ   90 (94)
Q Consensus        63 ~R~~~e~Le~rl~~LE~kl~~le~~~~~   90 (94)
                      .-.++++|=.|...||+.++.+..+++.
T Consensus         5 lEdkveElL~kn~~lEnEvarlk~lige   32 (33)
T 3i1g_A            5 LEAKVEELLSKNWNLENEVARLKKLVGE   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8999999999887688899999998567


No 25 
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107)
Probab=21.69  E-value=57  Score=14.14  Aligned_cols=52  Identities=21%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998739856999999999999999999999999999999999999
Q gi|254780412|r   34 AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLE   85 (94)
Q Consensus        34 ~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le   85 (94)
                      +++.....-...+=...++.+.+.+-+...+.++..|+.++..++..+..+=
T Consensus        23 l~~~rn~~sk~I~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~~~~~~~~l   74 (83)
T 1ses_A           23 VQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL   74 (83)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999975325154899999999999999998867999988776653


Done!