Query gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 94 No_of_seqs 106 out of 392 Neff 5.2 Searched_HMMs 23785 Date Mon May 30 10:05:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780412.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2pnv_A Small conductance calci 91.9 0.33 1.4E-05 27.3 5.8 35 55-89 6-40 (43) 2 1go4_E MAD1 (mitotic arrest de 86.3 1.4 6E-05 23.3 5.7 39 45-83 6-44 (100) 3 1dip_A Delta-sleep-inducing pe 84.2 0.71 3E-05 25.2 3.3 39 45-90 2-47 (78) 4 3gw6_A Endo-N-acetylneuraminid 82.5 0.65 2.7E-05 25.5 2.5 31 48-80 245-275 (275) 5 3ljm_A Coil Ser L9C; de novo d 78.8 2.5 0.0001 21.8 4.5 22 64-85 7-28 (31) 6 1u0i_A IAAL-E3; coiled-coil, d 73.9 1.8 7.5E-05 22.7 2.7 20 66-85 1-20 (26) 7 3iyn_Q Protein IX, PIX, hexon- 71.0 5.8 0.00024 19.4 5.2 31 59-89 99-129 (140) 8 1g6u_A Domain swapped dimer; d 69.8 3.9 0.00016 20.5 3.6 30 48-84 17-46 (48) 9 1aq5_A Matrilin-1, CMP, cartil 65.8 7.4 0.00031 18.8 4.5 23 59-81 24-46 (47) 10 3hrn_A Transient receptor pote 60.8 9.1 0.00038 18.2 6.8 39 48-86 3-41 (64) 11 3efg_A Protein SLYX homolog; x 51.6 5.7 0.00024 19.5 1.8 29 56-84 33-61 (78) 12 2ic6_A Nucleocapsid protein; h 44.3 17 0.0007 16.5 5.8 35 54-88 41-75 (78) 13 3ghg_A Fibrinogen alpha chain; 44.1 17 0.00071 16.5 7.9 29 63-91 129-157 (562) 14 3ioz_B T-cell surface glycopro 40.6 11 0.00047 17.6 1.9 19 39-57 21-39 (45) 15 2k48_A Nucleoprotein; viral pr 36.0 22 0.00094 15.7 5.3 64 20-86 34-103 (107) 16 2ic9_A Nucleocapsid protein; h 34.5 24 0.001 15.6 5.3 38 49-86 36-73 (96) 17 2er8_A Regulatory protein Leu3 33.5 18 0.00077 16.3 2.1 23 64-86 48-70 (72) 18 2fzt_A Hypothetical protein TM 33.3 25 0.001 15.5 5.5 39 49-87 29-73 (79) 19 3fdl_A Apoptosis regulator BCL 32.1 26 0.0011 15.3 5.5 45 18-62 34-78 (158) 20 3he4_A Synzip6; heterodimeric 30.6 28 0.0012 15.2 6.2 34 56-89 22-55 (56) 21 3ci9_A Heat shock factor-bindi 28.3 30 0.0013 14.9 2.5 17 65-81 31-47 (48) 22 1m1j_C Fibrinogen gamma chain; 28.2 30 0.0013 14.9 6.7 41 50-90 76-116 (409) 23 1zme_C Proline utilization tra 27.4 31 0.0013 14.8 4.2 25 65-89 44-68 (70) 24 2wuj_A Septum site-determining 27.3 31 0.0013 14.8 3.4 17 64-80 40-56 (57) 25 3kin_B Kinesin heavy chain; mo 26.1 33 0.0014 14.7 5.5 32 53-84 84-115 (117) 26 2ve7_C Kinetochore protein NUF 25.6 34 0.0014 14.6 2.4 34 53-86 143-176 (250) 27 1uuj_A Platelet-activating fac 25.5 25 0.0011 15.4 1.6 30 59-88 52-81 (88) 28 3bas_A Myosin heavy chain, str 25.4 34 0.0014 14.6 6.5 28 62-89 60-87 (89) 29 2jmh_A BLO T 5, mite allergen 23.8 36 0.0015 14.4 4.2 44 35-78 72-117 (119) 30 3mq7_A Bone marrow stromal ant 23.1 38 0.0016 14.3 5.9 27 62-88 68-94 (121) 31 3lss_A Seryl-tRNA synthetase; 22.4 39 0.0016 14.2 5.9 39 48-86 101-139 (484) 32 2nov_A DNA topoisomerase 4 sub 21.7 40 0.0017 14.1 2.7 41 49-89 412-454 (496) 33 3deu_A Transcriptional regulat 21.4 41 0.0017 14.1 6.1 47 23-72 118-164 (166) 34 1r48_A Proline/betaine transpo 21.2 41 0.0017 14.1 3.3 21 64-84 7-27 (33) 35 1ca9_A TRAF2, protein (TNF rec 21.0 41 0.0017 14.0 3.3 35 52-86 4-38 (192) No 1 >2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} Probab=91.86 E-value=0.33 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999650 Q gi|254780412|r 55 NVKRTTSHLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 55 v~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) +.-+++.-..++.+.||+||..||.||..+-+.+. T Consensus 6 vMYdlvSeL~~rsEdlEkri~~LEtkLd~l~~slq 40 (43) T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998768999999999989999998874 No 2 >1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1 Probab=86.34 E-value=1.4 Score=23.29 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=33.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 398569999999999999999999999999999999999 Q gi|254780412|r 45 MGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLAD 83 (94) Q Consensus 45 ldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~ 83 (94) .-++|+|+++.++.-+...+.+.+.|+.+.+.||-+|.. T Consensus 6 s~~~s~E~v~~Lr~kie~Le~E~~~L~~~k~~LE~~lE~ 44 (100) T 1go4_E 6 SFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 153569999999999999999999999999999999999 No 3 >1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1 Probab=84.22 E-value=0.71 Score=25.22 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=29.4 Q ss_pred CCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3985-------699999999999999999999999999999999999996500 Q gi|254780412|r 45 MGVV-------RAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 45 ldLV-------tREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) |||| -|||.|+++ ++|.+|+.|+..||..=+-|+.+..+ T Consensus 2 MDLVKsHLm~AVREEVevLk-------e~I~eL~~~~~~Le~EN~~Lk~~~~p 47 (78) T 1dip_A 2 MDLVKNHLMYAVREEVEILK-------EQIRELVEKNSQLERENTLLKTLASP 47 (78) T ss_dssp CCSTTTGGGGTCTTSCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSS T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 16999999999999999999-------99999999999999999999960899 No 4 >3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F} Probab=82.48 E-value=0.65 Score=25.48 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=19.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 569999999999999999999999999999999 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQ 80 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~k 80 (94) |..+||-.+ +.+-.+.++++|++||++||.| T Consensus 245 iry~el~~l--~~A~qe~~i~~LeaRi~aLE~k 275 (275) T 3gw6_A 245 VRPDGIFFA--EAAYQRRKLERIEARLSALEQK 275 (275) T ss_dssp ECHHHHHHH--HHHHHHHHHHHHHHHHHTTTC- T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHHHHCCC T ss_conf 879999999--9999999999999999986289 No 5 >3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 1coi_A Probab=78.84 E-value=2.5 Score=21.79 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADLE 85 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~le 85 (94) ..+..+||.++.+||+++..+| T Consensus 7 ekk~aalesk~qalekk~eale 28 (31) T 3ljm_A 7 EKKCAALESKLQALEKKLEALE 28 (31) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999987 No 6 >1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1 Probab=73.95 E-value=1.8 Score=22.68 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999 Q gi|254780412|r 66 EITAIGKRLEKIEQQLADLE 85 (94) Q Consensus 66 ~~e~Le~rl~~LE~kl~~le 85 (94) ++.+||+.|++||+.++.+| T Consensus 1 eiaalekeiaalekeiaale 20 (26) T 1u0i_A 1 EIAALEKEIAALEKEIAALE 20 (26) T ss_dssp CHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHH T ss_conf 91789999999999999998 No 7 >3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5} Probab=70.98 E-value=5.8 Score=19.45 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999650 Q gi|254780412|r 59 TTSHLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 59 ~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) .+.-.+.++++|..||.+|+.+++++...+. T Consensus 99 ~l~~l~a~L~aLt~~L~~L~qqv~el~~~~~ 129 (140) T 3iyn_Q 99 KLTALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999974 No 8 >1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1 Probab=69.79 E-value=3.9 Score=20.55 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=17.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5699999999999999999999999999999999999 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) .+-||.-++ ..++.+||+++++|..+|..+ T Consensus 17 fspeelaal-------eselqalekklaalksklqal 46 (48) T 1g6u_A 17 FSPEELAAL-------ESELQALEKKLAALKSKLQAL 46 (48) T ss_dssp CSHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999988-------999999999999999999875 No 9 >1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1 Probab=65.76 E-value=7.4 Score=18.77 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254780412|r 59 TTSHLREEITAIGKRLEKIEQQL 81 (94) Q Consensus 59 ~l~k~R~~~e~Le~rl~~LE~kl 81 (94) .+...-.+++++-+|++.||+++ T Consensus 24 ~lq~LtqkLe~~tkRLe~LEnri 46 (47) T 1aq5_A 24 LINTLQQKLEAVAKRIEALENKI 46 (47) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999998603 No 10 >3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A Probab=60.78 E-value=9.1 Score=18.20 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=27.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 569999999999999999999999999999999999999 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) |+.|||.++..-..+.-.-+-..-.+|+++-.||...|- T Consensus 3 Vs~eEf~vL~rRVdr~EhSIgSIvSKIDav~~KLEamer 41 (64) T 3hrn_A 3 VSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMER 41 (64) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 669999999999999998782899999999999998899 No 11 >3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Probab=51.62 E-value=5.7 Score=19.47 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254780412|r 56 VKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 56 ~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) +-.++.+-..+++.|..++..|..++..+ T Consensus 33 Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 61 (78) T 3efg_A 33 LSEALADARLTGARNAELIRHLLEDLGKV 61 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999973 No 12 >2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus} Probab=44.28 E-value=17 Score=16.53 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999965 Q gi|254780412|r 54 ENVKRTTSHLREEITAIGKRLEKIEQQLADLELFI 88 (94) Q Consensus 54 dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~ 88 (94) |+-+..+.+-+..+..|+.+|..|+-++++.+.+. T Consensus 41 ~~nK~~le~rk~~v~~LeeqL~kLk~q~tD~~enk 75 (78) T 2ic6_A 41 DVNKSTLQSRRAAVSALETKLGELKRELADLIAAQ 75 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 76489999999999999999999999988799842 No 13 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=44.12 E-value=17 Score=16.52 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999999965002 Q gi|254780412|r 63 LREEITAIGKRLEKIEQQLADLELFINQK 91 (94) Q Consensus 63 ~R~~~e~Le~rl~~LE~kl~~le~~~~~k 91 (94) ....+..|+.+|..+..++.+||-.++-+ T Consensus 129 ~~~~~~~l~~~~~~~~~~~~~le~~~~~~ 157 (562) T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999 No 14 >3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membrane, myristate, viral immunoevasion; 3.70A {Homo sapiens} Probab=40.60 E-value=11 Score=17.63 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.8 Q ss_pred HHHHHHCCCCCHHHHHHHH Q ss_conf 9999873985699999999 Q gi|254780412|r 39 QRTLNSMGVVRAEEIENVK 57 (94) Q Consensus 39 e~~l~kldLVtREEFdv~~ 57 (94) ....+.+++-.||||||+- T Consensus 21 nqlYNELn~grREEYdvLd 39 (45) T 3ioz_B 21 NQLYNELNLGRREEYDVLD 39 (45) T ss_pred HHHHHHHCCCCHHHHHHHH T ss_conf 6787774225047888886 No 15 >2k48_A Nucleoprotein; viral protein; NMR {Andes virus} Probab=36.01 E-value=22 Score=15.72 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=41.0 Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8887799999999------999999999987398569999999999999999999999999999999999999 Q gi|254780412|r 20 SDAFKDISKEAES------FAQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 20 ~~~~~~~~~Eie~------~~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) ++.+..+.+|+-. ..|+++..+=.- |-++-=|+-+..+.+-|..+.+|+.+|+.|..+++++=+ T Consensus 34 Ms~leelQ~Eit~hEqQLviArQKLkDAeka---~E~DPDdvNK~tlq~Rq~~VsaLe~KiaelKRqmAd~V~ 103 (107) T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKA---VEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7459999999999999999999999999998---752926660899999999999999999999999999987 No 16 >2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus} Probab=34.47 E-value=24 Score=15.57 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=31.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999999999999999999999999999999999999 Q gi|254780412|r 49 RAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 49 tREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) -++.=|+-+..+.+-+..+.+|+.+|+.|..+++++=+ T Consensus 36 E~DpDevNK~~~~~R~~~Vs~lq~KiaelKr~lAd~v~ 73 (96) T 2ic9_A 36 ELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96) T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 63936662899999999999999999999999999997 No 17 >2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A Probab=33.51 E-value=18 Score=16.28 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~le~ 86 (94) +..+..|+.+|+.|+.+|+.+.. T Consensus 48 ~~~~~~l~~~~~~l~~~l~~l~~ 70 (72) T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72) T ss_dssp HHHHHHHHHHHHHHHHHHHCC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 66899999999999999998723 No 18 >2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima MSB8} SCOP: a.46.3.1 PDB: 2g42_A Probab=33.33 E-value=25 Score=15.45 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=33.1 Q ss_pred CHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999------9999999999999999999999999999999996 Q gi|254780412|r 49 RAEEI------ENVKRTTSHLREEITAIGKRLEKIEQQLADLELF 87 (94) Q Consensus 49 tREEF------dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~ 87 (94) .||+| +.+...+.|-|.+++-++.+.++|-..+..+..- T Consensus 29 ~Re~ll~~Lp~~~L~ei~EkD~~R~e~i~~~~~~L~~~~~~ir~~ 73 (79) T 2fzt_A 29 KRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREA 73 (79) T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998677398999999976899999999999999999878889 No 19 >3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane; 1.78A {Homo sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2p1l_A 2o2m_A* 2o2n_A* Probab=32.07 E-value=26 Score=15.32 Aligned_cols=45 Identities=7% Similarity=0.128 Sum_probs=36.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 668887799999999999999999987398569999999999999 Q gi|254780412|r 18 CASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSH 62 (94) Q Consensus 18 ~a~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~~~l~k 62 (94) ....++..+.+|++...+...+.....+++..+..+++...|+.. T Consensus 34 ~v~~~Lr~vg~ele~~~~~~f~~~~~~L~it~~~~~~~f~~Va~e 78 (158) T 3fdl_A 34 AVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNE 78 (158) T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCCCTTTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 899999999999999989999999998088975189999999999 No 20 >3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene} Probab=30.56 E-value=28 Score=15.16 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999650 Q gi|254780412|r 56 VKRTTSHLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 56 ~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) +.-+..+....+..||+-|+.||+-++.+|-.+. T Consensus 22 lenivarlendnanlekdianlekdianlerdva 55 (56) T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIANLERDVA 55 (56) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999965530088889889989998887622 No 21 >3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} Probab=28.33 E-value=30 Score=14.93 Aligned_cols=17 Identities=18% Similarity=0.558 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780412|r 65 EEITAIGKRLEKIEQQL 81 (94) Q Consensus 65 ~~~e~Le~rl~~LE~kl 81 (94) .|++..-.||+.||+-+ T Consensus 31 ~riDdM~~rIDdLEksi 47 (48) T 3ci9_A 31 GRIDDMSSRIDDLEKNI 47 (48) T ss_dssp HHHHHHHHHHHTTC--- T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999883688897643 No 22 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=28.23 E-value=30 Score=14.91 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999996500 Q gi|254780412|r 50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQ 90 (94) Q Consensus 50 REEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~~~~~ 90 (94) .+..+.+........+++..++..|..++.+|.+++-.+.. T Consensus 76 qq~~e~l~q~~~el~eei~~lk~~I~~~e~qI~eLq~~l~~ 116 (409) T 1m1j_C 76 PQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409) T ss_dssp SSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999899999999987 No 23 >1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A Probab=27.36 E-value=31 Score=14.81 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=17.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999650 Q gi|254780412|r 65 EEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 65 ~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) ..+..|+.+++.|+..+..++..+. T Consensus 44 ~~~~~l~~~~~~l~~~~~~l~~~l~ 68 (70) T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999986 No 24 >2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A Probab=27.30 E-value=31 Score=14.81 Aligned_cols=17 Identities=6% Similarity=0.329 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780412|r 64 REEITAIGKRLEKIEQQ 80 (94) Q Consensus 64 R~~~e~Le~rl~~LE~k 80 (94) ..++..|+.+|..|+.+ T Consensus 40 ~~e~~~L~~~~~~l~~~ 56 (57) T 2wuj_A 40 LRKKTELEAKVNELDER 56 (57) T ss_dssp HHHHHHHHHHHHC---- T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999854 No 25 >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Probab=26.10 E-value=33 Score=14.67 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999 Q gi|254780412|r 53 IENVKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 53 Fdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) .+.....+.+..++++.|+.++..|+.++..+ T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~l 115 (117) T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999986 No 26 >2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle, microtubule, coiled-coil, coiled coil; 2.88A {Homo sapiens} Probab=25.57 E-value=34 Score=14.61 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999 Q gi|254780412|r 53 IENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 53 Fdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) |+-.......+-++...|..++.+++++|.+++. T Consensus 143 ~~e~~~e~~~~~ek~~~l~~~~~Ele~kIe~lk~ 176 (250) T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250) T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999888999999999999999978999998 No 27 >1uuj_A Platelet-activating factor acetylhydrolase IB alpha subunit; mitosis, neurogenesis, cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 Probab=25.45 E-value=25 Score=15.40 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999965 Q gi|254780412|r 59 TTSHLREEITAIGKRLEKIEQQLADLELFI 88 (94) Q Consensus 59 ~l~k~R~~~e~Le~rl~~LE~kl~~le~~~ 88 (94) .|.|==.-+--|.++|-.||++++.++.-+ T Consensus 52 LLEKKWTSVvRLQKKImdLE~~~~~lq~El 81 (88) T 1uuj_A 52 LLEKKWTSVIRLQKKVMELESKLNEAKEEF 81 (88) T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC-- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 003789989999999999999999999998 No 28 >3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Probab=25.42 E-value=34 Score=14.59 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999650 Q gi|254780412|r 62 HLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 62 k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) ......+.|+.++..|..++.+|+-.++ T Consensus 60 ~~~~~~~ele~~~~~L~~~~~eLe~~l~ 87 (89) T 3bas_A 60 QLEDKVEELLSKNYHLENEVARLKKLVG 87 (89) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999999998775 No 29 >2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A Probab=23.77 E-value=36 Score=14.39 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=25.0 Q ss_pred HHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999987--3985699999999999999999999999999999 Q gi|254780412|r 35 QIKIQRTLNS--MGVVRAEEIENVKRTTSHLREEITAIGKRLEKIE 78 (94) Q Consensus 35 r~~~e~~l~k--ldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE 78 (94) +..+++-+-+ +|++-|=-||...+...=.-..+.+++++|.+.+ T Consensus 72 ~~~lerElKRtDLnilEkfNfE~al~t~~iL~KDLk~~e~kVKai~ 117 (119) T 2jmh_A 72 QGALERELKRTDLNILERFNYEEAQTLSKILLKDLKETEQKVKDIQ 117 (119) T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999989700013599982699999999999988999999988771 No 30 >3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Probab=23.06 E-value=38 Score=14.31 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999965 Q gi|254780412|r 62 HLREEITAIGKRLEKIEQQLADLELFI 88 (94) Q Consensus 62 k~R~~~e~Le~rl~~LE~kl~~le~~~ 88 (94) ..++++++|+..|..|+.+|.++.+-+ T Consensus 68 q~q~~v~Elegei~~Lnq~Lqda~aev 94 (121) T 3mq7_A 68 QGQKKVEELEGEITTLNHKLQDASAEV 94 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 889999999989999999999999999 No 31 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=22.38 E-value=39 Score=14.22 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=23.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 569999999999999999999999999999999999999 Q gi|254780412|r 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 48 VtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) +.-++.+-+++-.....+++..|++.+..++.++..+=. T Consensus 101 ~~~~~~~~Lk~~~k~Lk~~i~~le~~l~ele~~l~~lll 139 (484) T 3lss_A 101 VEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484) T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 224469999999999999999999999999999999997 No 32 >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* Probab=21.73 E-value=40 Score=14.14 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=22.9 Q ss_pred CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999999999999--999999999999999999999999650 Q gi|254780412|r 49 RAEEIENVKRTTSH--LREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 49 tREEFdv~~~~l~k--~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) |-+.+|.+..|=.+ |+++++.|++.++.|+++++.|+..++ T Consensus 412 se~q~dyLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~L~~il~ 454 (496) T 2nov_A 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIG 454 (496) T ss_dssp CHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999997589997589999999999999999999999968 No 33 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=21.35 E-value=41 Score=14.09 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77999999999999999999873985699999999999999999999999 Q gi|254780412|r 23 FKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGK 72 (94) Q Consensus 23 ~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~ 72 (94) ...+-.++...+....+.+++. .|-+|++....++.+....++.|+. T Consensus 118 G~~~~~~~~~~~~~~~~~l~~~---ls~~e~~~l~~~L~~l~~nl~~l~~ 164 (166) T 3deu_A 118 AEPLIAEMEEVIHKTRGEILAG---ISSEEIELLIKLIAKLEHNIMELHS 164 (166) T ss_dssp GHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999948---9999999999999999999999872 No 34 >1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1 Probab=21.23 E-value=41 Score=14.08 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|254780412|r 64 REEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 64 R~~~e~Le~rl~~LE~kl~~l 84 (94) -.+++.+..+|++||+|=..| T Consensus 7 EqKIedId~qIaeLe~KR~~L 27 (33) T 1r48_A 7 EQKIDDIDHEIADLQAKRTRL 27 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 998987999999999999999 No 35 >1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Probab=20.99 E-value=41 Score=14.04 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999 Q gi|254780412|r 52 EIENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 52 EFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) ..+.+..-+......+..+..++..|+.++..++. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 38 (192) T 1ca9_A 4 KIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEA 38 (192) T ss_dssp TTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999999999998640 Done!