Query gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 94 No_of_seqs 106 out of 392 Neff 5.2 Searched_HMMs 13730 Date Wed Jun 1 03:44:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780412.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ivsa1 a.2.7.3 (A:797-862) Va 28.3 17 0.0013 14.9 3.4 45 36-84 21-65 (66) 2 d2fzta1 a.46.3.1 (A:1-78) Hypo 27.3 18 0.0013 14.8 5.5 38 49-86 28-71 (78) 3 d2jm6b1 f.1.4.1 (B:147-308) EA 18.6 27 0.002 13.7 7.0 47 17-63 42-88 (162) 4 d1lrza1 a.2.7.4 (A:245-309) Me 15.9 31 0.0023 13.3 4.4 28 62-89 34-61 (65) 5 d2p6va1 a.277.1.1 (A:582-678) 14.6 34 0.0024 13.1 3.1 45 6-57 15-59 (97) 6 d1zy3a1 f.1.4.1 (A:1-170) Apop 14.3 34 0.0025 13.0 2.5 43 20-62 42-84 (170) 7 d1grja1 a.2.1.1 (A:2-79) GreA 13.9 35 0.0026 13.0 6.7 44 34-84 28-71 (78) 8 d1gqea_ e.38.1.1 (A:) Polypept 13.8 35 0.0026 13.0 3.8 23 67-89 93-115 (362) 9 d2f23a1 a.2.1.1 (A:3-77) GreA 13.2 37 0.0027 12.8 5.6 43 34-83 27-69 (75) 10 d1uuja_ a.221.1.1 (A:) Lissenc 13.0 37 0.0027 12.8 2.2 26 59-84 49-74 (76) No 1 >d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=28.30 E-value=17 Score=14.92 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=31.9 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999873985699999999999999999999999999999999999 Q gi|254780412|r 36 IKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 36 ~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) ..++.-|+.-++|.+ |-..|....+.++..+...+..|+..|+.| T Consensus 21 ~~~~~kL~N~~F~~k----AP~~Vv~~~k~kl~~~~~~~~~l~~~l~~L 65 (66) T d1ivsa1 21 ERSQRKLASPGFREK----APKEVVEAEEARLKENLEQAERIREALSQI 65 (66) T ss_dssp HHHHHHHTSTTHHHH----SCTTHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCHHHHHH----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999988878078776----989999999999999999999999999860 No 2 >d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]} Probab=27.30 E-value=18 Score=14.81 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=32.2 Q ss_pred CHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999------999999999999999999999999999999999 Q gi|254780412|r 49 RAEEI------ENVKRTTSHLREEITAIGKRLEKIEQQLADLEL 86 (94) Q Consensus 49 tREEF------dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~ 86 (94) .||+| |.+...+.|-|.+++-++++.+.|-..+..+.. T Consensus 28 kReell~~Lp~~~L~ei~EkD~kR~e~i~k~~~~L~q~~~~ir~ 71 (78) T d2fzta1 28 KRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIRE 71 (78) T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999877839899999997689999999999999999988988 No 3 >d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=18.57 E-value=27 Score=13.71 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 86688877999999999999999999873985699999999999999 Q gi|254780412|r 17 SCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHL 63 (94) Q Consensus 17 ~~a~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~~~l~k~ 63 (94) ..+..++..+.+|++...+......+..+++.+.-.++....|+... T Consensus 42 ~~~~~~L~~~g~ele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~el 88 (162) T d2jm6b1 42 RRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVMVHV 88 (162) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSTTHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 18999999999999998899999999873899830799999999999 No 4 >d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]} Probab=15.86 E-value=31 Score=13.30 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999650 Q gi|254780412|r 62 HLREEITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 62 k~R~~~e~Le~rl~~LE~kl~~le~~~~ 89 (94) |...+...|+.++++++.++..-+-++. T Consensus 34 K~~nk~~el~~Q~~s~~~ki~Ea~~li~ 61 (65) T d1lrza1 34 KAHNKRDNLQQQLDANEQKIEEGKRLQE 61 (65) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8887888899999999999999999998 No 5 >d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]} Probab=14.62 E-value=34 Score=13.10 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=32.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 0699999999986688877999999999999999999873985699999999 Q gi|254780412|r 6 NQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVK 57 (94) Q Consensus 6 n~~~ddla~~~~~a~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~ 57 (94) .+||..+-+++++. +..-|+..+||..++..++ +=++-|||-... T Consensus 15 k~FL~tLi~l~s~~-----~~spe~~~~Vr~LV~~L~~--~~i~~EEF~~~L 59 (97) T d2p6va1 15 KNFLSTLIKLASSG-----KQSTETAANVKELVQNLLD--GKIEAEDFTSRL 59 (97) T ss_dssp HHHHHHHHHHHTSS-----SSCHHHHHHHHHHHHHHHT--TSSCHHHHHHHH T ss_pred HHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHHH--CCCCHHHHHHHH T ss_conf 99999999981488-----9893488999999999983--886899999999 No 6 >d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]} Probab=14.27 E-value=34 Score=13.04 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 8887799999999999999999987398569999999999999 Q gi|254780412|r 20 SDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSH 62 (94) Q Consensus 20 ~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~~~l~k 62 (94) ..++..+.+|++...+...+.....+++..+..+++...|+.. T Consensus 42 ~~~Lr~vgdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~e 84 (170) T d1zy3a1 42 HQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDE 84 (170) T ss_dssp HHHHHHHTTHHHHHHSCHHHHHHHHTCSSCCCSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 9999999999999989999999998289976279999999999 No 7 >d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=13.87 E-value=35 Score=12.97 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999873985699999999999999999999999999999999999 Q gi|254780412|r 34 AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 34 ~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) +-..+..+-+.-||=--=||++ +++++..+++||..|+..|+.. T Consensus 28 i~~~I~~Ar~~GDlsENaeY~a-------AKe~q~~~e~RI~eLe~~L~~a 71 (78) T d1grja1 28 IIAAIAEAREHGDLKENAEYHA-------AREQQGFCEGRIKDIEAKLSNA 71 (78) T ss_dssp HHHHHHHHHTTCCGGGCHHHHH-------HHHHHHHHHHHHHHHHHHHHHE T ss_pred HHHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999998488633377899-------9999999999999999998276 No 8 >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Probab=13.80 E-value=35 Score=12.96 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999650 Q gi|254780412|r 67 ITAIGKRLEKIEQQLADLELFIN 89 (94) Q Consensus 67 ~e~Le~rl~~LE~kl~~le~~~~ 89 (94) .+.++..+..|+..+..+|...- T Consensus 93 ~~e~~~~l~~l~~~l~~le~~ll 115 (362) T d1gqea_ 93 FNEAVAELDALEEKLAQLEFRRM 115 (362) T ss_dssp HHHHHHHHHHHHHHHHHHGGGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 88899999998622467787521 No 9 >d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=13.18 E-value=37 Score=12.85 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999987398569999999999999999999999999999999999 Q gi|254780412|r 34 AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLAD 83 (94) Q Consensus 34 ~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~ 83 (94) +-..+..+-..-||=--=||++ +++++..+++||..|+..|+. T Consensus 27 i~~~I~eAr~~GDl~ENaeY~a-------Ake~q~~~e~rI~eLe~~L~~ 69 (75) T d2f23a1 27 ATKILQELMESSDDYDDSGLEA-------AKQEKARIEARIDSLEDILSR 69 (75) T ss_dssp HHHHHHHHHTCSCCSCSHHHHH-------HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999987084432447999-------999999999999999998701 No 10 >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=12.98 E-value=37 Score=12.81 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999 Q gi|254780412|r 59 TTSHLREEITAIGKRLEKIEQQLADL 84 (94) Q Consensus 59 ~l~k~R~~~e~Le~rl~~LE~kl~~l 84 (94) .|.|==.-+--|.++|-.||.+++.+ T Consensus 49 lLEKKWtSViRLQkKImdLE~~~~~l 74 (76) T d1uuja_ 49 LLEKKWTSVIRLQKKVMELESKLNEA 74 (76) T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 21258998999999999999999986 Done!