Query         gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs    106 out of 392
Neff          5.2 
Searched_HMMs 13730
Date          Wed Jun  1 03:44:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780412.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ivsa1 a.2.7.3 (A:797-862) Va  28.3      17  0.0013   14.9   3.4   45   36-84     21-65  (66)
  2 d2fzta1 a.46.3.1 (A:1-78) Hypo  27.3      18  0.0013   14.8   5.5   38   49-86     28-71  (78)
  3 d2jm6b1 f.1.4.1 (B:147-308) EA  18.6      27   0.002   13.7   7.0   47   17-63     42-88  (162)
  4 d1lrza1 a.2.7.4 (A:245-309) Me  15.9      31  0.0023   13.3   4.4   28   62-89     34-61  (65)
  5 d2p6va1 a.277.1.1 (A:582-678)   14.6      34  0.0024   13.1   3.1   45    6-57     15-59  (97)
  6 d1zy3a1 f.1.4.1 (A:1-170) Apop  14.3      34  0.0025   13.0   2.5   43   20-62     42-84  (170)
  7 d1grja1 a.2.1.1 (A:2-79) GreA   13.9      35  0.0026   13.0   6.7   44   34-84     28-71  (78)
  8 d1gqea_ e.38.1.1 (A:) Polypept  13.8      35  0.0026   13.0   3.8   23   67-89     93-115 (362)
  9 d2f23a1 a.2.1.1 (A:3-77) GreA   13.2      37  0.0027   12.8   5.6   43   34-83     27-69  (75)
 10 d1uuja_ a.221.1.1 (A:) Lissenc  13.0      37  0.0027   12.8   2.2   26   59-84     49-74  (76)

No 1  
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=28.30  E-value=17  Score=14.92  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999873985699999999999999999999999999999999999
Q gi|254780412|r   36 IKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        36 ~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      ..++.-|+.-++|.+    |-..|....+.++..+...+..|+..|+.|
T Consensus        21 ~~~~~kL~N~~F~~k----AP~~Vv~~~k~kl~~~~~~~~~l~~~l~~L   65 (66)
T d1ivsa1          21 ERSQRKLASPGFREK----APKEVVEAEEARLKENLEQAERIREALSQI   65 (66)
T ss_dssp             HHHHHHHTSTTHHHH----SCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCHHHHHH----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999988878078776----989999999999999999999999999860


No 2  
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=27.30  E-value=18  Score=14.81  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             CHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69999------999999999999999999999999999999999
Q gi|254780412|r   49 RAEEI------ENVKRTTSHLREEITAIGKRLEKIEQQLADLEL   86 (94)
Q Consensus        49 tREEF------dv~~~~l~k~R~~~e~Le~rl~~LE~kl~~le~   86 (94)
                      .||+|      |.+...+.|-|.+++-++++.+.|-..+..+..
T Consensus        28 kReell~~Lp~~~L~ei~EkD~kR~e~i~k~~~~L~q~~~~ir~   71 (78)
T d2fzta1          28 KRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIRE   71 (78)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999877839899999997689999999999999999988988


No 3  
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.57  E-value=27  Score=13.71  Aligned_cols=47  Identities=11%  Similarity=0.261  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             86688877999999999999999999873985699999999999999
Q gi|254780412|r   17 SCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHL   63 (94)
Q Consensus        17 ~~a~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~~~l~k~   63 (94)
                      ..+..++..+.+|++...+......+..+++.+.-.++....|+...
T Consensus        42 ~~~~~~L~~~g~ele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~el   88 (162)
T d2jm6b1          42 RRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVMVHV   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             18999999999999998899999999873899830799999999999


No 4  
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=15.86  E-value=31  Score=13.30  Aligned_cols=28  Identities=11%  Similarity=0.200  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999650
Q gi|254780412|r   62 HLREEITAIGKRLEKIEQQLADLELFIN   89 (94)
Q Consensus        62 k~R~~~e~Le~rl~~LE~kl~~le~~~~   89 (94)
                      |...+...|+.++++++.++..-+-++.
T Consensus        34 K~~nk~~el~~Q~~s~~~ki~Ea~~li~   61 (65)
T d1lrza1          34 KAHNKRDNLQQQLDANEQKIEEGKRLQE   61 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8887888899999999999999999998


No 5  
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.62  E-value=34  Score=13.10  Aligned_cols=45  Identities=24%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             0699999999986688877999999999999999999873985699999999
Q gi|254780412|r    6 NQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVK   57 (94)
Q Consensus         6 n~~~ddla~~~~~a~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~   57 (94)
                      .+||..+-+++++.     +..-|+..+||..++..++  +=++-|||-...
T Consensus        15 k~FL~tLi~l~s~~-----~~spe~~~~Vr~LV~~L~~--~~i~~EEF~~~L   59 (97)
T d2p6va1          15 KNFLSTLIKLASSG-----KQSTETAANVKELVQNLLD--GKIEAEDFTSRL   59 (97)
T ss_dssp             HHHHHHHHHHHTSS-----SSCHHHHHHHHHHHHHHHT--TSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf             99999999981488-----9893488999999999983--886899999999


No 6  
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.27  E-value=34  Score=13.04  Aligned_cols=43  Identities=9%  Similarity=0.114  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             8887799999999999999999987398569999999999999
Q gi|254780412|r   20 SDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSH   62 (94)
Q Consensus        20 ~~~~~~~~~Eie~~~r~~~e~~l~kldLVtREEFdv~~~~l~k   62 (94)
                      ..++..+.+|++...+...+.....+++..+..+++...|+..
T Consensus        42 ~~~Lr~vgdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~e   84 (170)
T d1zy3a1          42 HQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDE   84 (170)
T ss_dssp             HHHHHHHTTHHHHHHSCHHHHHHHHTCSSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9999999999999989999999998289976279999999999


No 7  
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.87  E-value=35  Score=12.97  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999873985699999999999999999999999999999999999
Q gi|254780412|r   34 AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        34 ~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      +-..+..+-+.-||=--=||++       +++++..+++||..|+..|+..
T Consensus        28 i~~~I~~Ar~~GDlsENaeY~a-------AKe~q~~~e~RI~eLe~~L~~a   71 (78)
T d1grja1          28 IIAAIAEAREHGDLKENAEYHA-------AREQQGFCEGRIKDIEAKLSNA   71 (78)
T ss_dssp             HHHHHHHHHTTCCGGGCHHHHH-------HHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999998488633377899-------9999999999999999998276


No 8  
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=13.80  E-value=35  Score=12.96  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999650
Q gi|254780412|r   67 ITAIGKRLEKIEQQLADLELFIN   89 (94)
Q Consensus        67 ~e~Le~rl~~LE~kl~~le~~~~   89 (94)
                      .+.++..+..|+..+..+|...-
T Consensus        93 ~~e~~~~l~~l~~~l~~le~~ll  115 (362)
T d1gqea_          93 FNEAVAELDALEEKLAQLEFRRM  115 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88899999998622467787521


No 9  
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.18  E-value=37  Score=12.85  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987398569999999999999999999999999999999999
Q gi|254780412|r   34 AQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLAD   83 (94)
Q Consensus        34 ~r~~~e~~l~kldLVtREEFdv~~~~l~k~R~~~e~Le~rl~~LE~kl~~   83 (94)
                      +-..+..+-..-||=--=||++       +++++..+++||..|+..|+.
T Consensus        27 i~~~I~eAr~~GDl~ENaeY~a-------Ake~q~~~e~rI~eLe~~L~~   69 (75)
T d2f23a1          27 ATKILQELMESSDDYDDSGLEA-------AKQEKARIEARIDSLEDILSR   69 (75)
T ss_dssp             HHHHHHHHHTCSCCSCSHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999987084432447999-------999999999999999998701


No 10 
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.98  E-value=37  Score=12.81  Aligned_cols=26  Identities=12%  Similarity=0.239  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999
Q gi|254780412|r   59 TTSHLREEITAIGKRLEKIEQQLADL   84 (94)
Q Consensus        59 ~l~k~R~~~e~Le~rl~~LE~kl~~l   84 (94)
                      .|.|==.-+--|.++|-.||.+++.+
T Consensus        49 lLEKKWtSViRLQkKImdLE~~~~~l   74 (76)
T d1uuja_          49 LLEKKWTSVIRLQKKVMELESKLNEA   74 (76)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             21258998999999999999999986


Done!