RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780412|ref|YP_003064825.1| hypothetical protein
CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
(94 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.1 bits (70), Expect = 0.065
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 55/126 (43%)
Query: 3 FRSNQFFQ------Q----ASRLASCAS-DAFKDISKEA------------ESFAQIKI- 38
RS + + Q A +A S ++F ++A E++ +
Sbjct: 263 LRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 39 ----QRTL-NSMGV------VRA---EEIEN-VKRTTSHLREEITAIGKRLEKIEQQLAD 83
+ +L N+ GV + E++++ V +T SHL +Q+
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA------------GKQVE- 367
Query: 84 LELFIN 89
+ L +N
Sbjct: 368 ISL-VN 372
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I;
HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2
e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A*
1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A*
1rr8_C* 1ej9_A*
Length = 591
Score = 28.2 bits (63), Expect = 0.39
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEK 93
+++ + + + ++ + + K ++++E+QL LE+ +E+
Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREE 536
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 26.3 bits (57), Expect = 1.7
Identities = 5/38 (13%), Positives = 20/38 (52%)
Query: 51 EEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFI 88
+ ++++ +R+++T + + ++E+Q L +
Sbjct: 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
macromolecular mimicry, translation; 1.81A {Escherichia
coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 26.4 bits (58), Expect = 1.7
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 51 EEIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92
I+++ + LR + A +RLE++ +L +++ +
Sbjct: 9 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPER 52
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron
oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2b24_A
Length = 470
Score = 25.7 bits (55), Expect = 2.4
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 22 AFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHLR 64
KD + + RT G ++ EN + T +
Sbjct: 342 VEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMG 384
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism,
pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1
PDB: 1w37_A 1w3n_A* 1w3t_A*
Length = 293
Score = 25.5 bits (54), Expect = 2.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 65 EEITAIGKRLEKIEQQLADLEL 86
EE + K++E I +L +L++
Sbjct: 269 EEERQLIKKVEGIRAKLVELKI 290
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 24.7 bits (53), Expect = 4.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 40 RTLNSMGVVRAEEIENVKRTTSHL 63
S +R +++++V RT HL
Sbjct: 119 PLTISQPCIRLDDLDSVGRTGRHL 142
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 24.7 bits (53), Expect = 4.8
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 52 EIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92
++E + + L +I RL+++E++L D L+ + +
Sbjct: 2 DLERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEA 44
>1n6m_A Claret segregational protein; NCD, microtubule, motor, kinesin,
cell cycle; HET: ADP; 2.50A {Drosophila melanogaster}
SCOP: c.37.1.9 PDB: 2ncd_A* 1cz7_A*
Length = 409
Score = 24.4 bits (52), Expect = 7.0
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 54 ENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
+ HLR+ + + E+ +L + + Q E
Sbjct: 3 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME 43
>3eqc_A Dual specificity mitogen-activated protein kinase kinase 1; MEK1
kinase, acetylation, ATP-binding, disease mutation,
nucleotide-binding; HET: 3BM AGS; 1.80A {Homo sapiens}
PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3dv3_A* 1s9i_A*
Length = 360
Score = 24.3 bits (52), Expect = 7.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 71 GKRLEKI---EQQLADLELFINQKEK 93
GK+LE++ EQQ LE F+ QK+K
Sbjct: 1 GKKLEELELDEQQRKRLEAFLTQKQK 26
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil,
receptor-binding, triple beta-spiral, viral protein,
virion, coiled coil, beta-barrel; 1.75A {Avian
reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Length = 211
Score = 24.4 bits (53), Expect = 7.2
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 38 IQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIE 78
+Q T++ + I N+K S IT + R++ +E
Sbjct: 2 LQTTVDGN----STAISNLKSDISSNGLAITDLQDRVKSLE 38
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 24.3 bits (52), Expect = 7.2
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 63 LREEITAIGKRLEKIEQQLADLELFINQKE 92
+ ++ A+ +R E+++ L D + +Q+
Sbjct: 5 IVAKLEALHERHEEVQALLGDAQTIADQER 34
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A
{Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A*
1ecn_A* 1eco_A*
Length = 136
Score = 23.9 bits (51), Expect = 9.5
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 50 AEEIENVKRTTSHLREEITAIGKRL 74
A++I V+ + ++ + I +
Sbjct: 3 ADQISTVQASFDKVKGDPVGILYAV 27
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 23.9 bits (51), Expect = 9.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 40 RTLNSMGVVRAEEIENVKRTTSHL 63
+ S +R +I+NV T H
Sbjct: 119 PLVISQPSIRFTDIDNVGITGRHF 142
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.126 0.320
Gapped
Lambda K H
0.267 0.0508 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 717,160
Number of extensions: 29039
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 101
Length of query: 94
Length of database: 5,693,230
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,214,346
Effective search space: 139073418
Effective search space used: 139073418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)