RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62] (94 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.1 bits (70), Expect = 0.065 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 55/126 (43%) Query: 3 FRSNQFFQ------Q----ASRLASCAS-DAFKDISKEA------------ESFAQIKI- 38 RS + + Q A +A S ++F ++A E++ + Sbjct: 263 LRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320 Query: 39 ----QRTL-NSMGV------VRA---EEIEN-VKRTTSHLREEITAIGKRLEKIEQQLAD 83 + +L N+ GV + E++++ V +T SHL +Q+ Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA------------GKQVE- 367 Query: 84 LELFIN 89 + L +N Sbjct: 368 ISL-VN 372 >1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Length = 591 Score = 28.2 bits (63), Expect = 0.39 Identities = 7/46 (15%), Positives = 25/46 (54%) Query: 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEK 93 +++ + + + ++ + + K ++++E+QL LE+ +E+ Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREE 536 >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 Score = 26.3 bits (57), Expect = 1.7 Identities = 5/38 (13%), Positives = 20/38 (52%) Query: 51 EEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFI 88 + ++++ +R+++T + + ++E+Q L + Sbjct: 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Score = 26.4 bits (58), Expect = 1.7 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 51 EEIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92 I+++ + LR + A +RLE++ +L +++ + Sbjct: 9 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPER 52 >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 Score = 25.7 bits (55), Expect = 2.4 Identities = 8/43 (18%), Positives = 14/43 (32%) Query: 22 AFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHLR 64 KD + + RT G ++ EN + T + Sbjct: 342 VEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMG 384 >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* Length = 293 Score = 25.5 bits (54), Expect = 2.8 Identities = 7/22 (31%), Positives = 14/22 (63%) Query: 65 EEITAIGKRLEKIEQQLADLEL 86 EE + K++E I +L +L++ Sbjct: 269 EEERQLIKKVEGIRAKLVELKI 290 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Score = 24.7 bits (53), Expect = 4.8 Identities = 7/24 (29%), Positives = 13/24 (54%) Query: 40 RTLNSMGVVRAEEIENVKRTTSHL 63 S +R +++++V RT HL Sbjct: 119 PLTISQPCIRLDDLDSVGRTGRHL 142 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Score = 24.7 bits (53), Expect = 4.8 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 52 EIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92 ++E + + L +I RL+++E++L D L+ + + Sbjct: 2 DLERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEA 44 >1n6m_A Claret segregational protein; NCD, microtubule, motor, kinesin, cell cycle; HET: ADP; 2.50A {Drosophila melanogaster} SCOP: c.37.1.9 PDB: 2ncd_A* 1cz7_A* Length = 409 Score = 24.4 bits (52), Expect = 7.0 Identities = 7/41 (17%), Positives = 15/41 (36%) Query: 54 ENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94 + HLR+ + + E+ +L + + Q E Sbjct: 3 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME 43 >3eqc_A Dual specificity mitogen-activated protein kinase kinase 1; MEK1 kinase, acetylation, ATP-binding, disease mutation, nucleotide-binding; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3dv3_A* 1s9i_A* Length = 360 Score = 24.3 bits (52), Expect = 7.1 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%) Query: 71 GKRLEKI---EQQLADLELFINQKEK 93 GK+LE++ EQQ LE F+ QK+K Sbjct: 1 GKKLEELELDEQQRKRLEAFLTQKQK 26 >2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A Length = 211 Score = 24.4 bits (53), Expect = 7.2 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 38 IQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIE 78 +Q T++ + I N+K S IT + R++ +E Sbjct: 2 LQTTVDGN----STAISNLKSDISSNGLAITDLQDRVKSLE 38 >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Score = 24.3 bits (52), Expect = 7.2 Identities = 6/30 (20%), Positives = 17/30 (56%) Query: 63 LREEITAIGKRLEKIEQQLADLELFINQKE 92 + ++ A+ +R E+++ L D + +Q+ Sbjct: 5 IVAKLEALHERHEEVQALLGDAQTIADQER 34 >1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A* Length = 136 Score = 23.9 bits (51), Expect = 9.5 Identities = 4/25 (16%), Positives = 12/25 (48%) Query: 50 AEEIENVKRTTSHLREEITAIGKRL 74 A++I V+ + ++ + I + Sbjct: 3 ADQISTVQASFDKVKGDPVGILYAV 27 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Score = 23.9 bits (51), Expect = 9.7 Identities = 7/24 (29%), Positives = 11/24 (45%) Query: 40 RTLNSMGVVRAEEIENVKRTTSHL 63 + S +R +I+NV T H Sbjct: 119 PLVISQPSIRFTDIDNVGITGRHF 142 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.126 0.320 Gapped Lambda K H 0.267 0.0508 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 717,160 Number of extensions: 29039 Number of successful extensions: 307 Number of sequences better than 10.0: 1 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 101 Length of query: 94 Length of database: 5,693,230 Length adjustment: 61 Effective length of query: 33 Effective length of database: 4,214,346 Effective search space: 139073418 Effective search space used: 139073418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.6 bits)