RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780412|ref|YP_003064825.1| hypothetical protein
CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.1 bits (70), Expect = 0.065
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 55/126 (43%)

Query: 3   FRSNQFFQ------Q----ASRLASCAS-DAFKDISKEA------------ESFAQIKI- 38
            RS  + +      Q    A  +A   S ++F    ++A            E++    + 
Sbjct: 263 LRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320

Query: 39  ----QRTL-NSMGV------VRA---EEIEN-VKRTTSHLREEITAIGKRLEKIEQQLAD 83
               + +L N+ GV      +     E++++ V +T SHL               +Q+  
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA------------GKQVE- 367

Query: 84  LELFIN 89
           + L +N
Sbjct: 368 ISL-VN 372


>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I;
           HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2
           e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A*
           1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A*
           1rr8_C* 1ej9_A*
          Length = 591

 Score = 28.2 bits (63), Expect = 0.39
 Identities = 7/46 (15%), Positives = 25/46 (54%)

Query: 48  VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEK 93
           +++ + +      +  ++ + +  K ++++E+QL  LE+    +E+
Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREE 536


>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
          Length = 501

 Score = 26.3 bits (57), Expect = 1.7
 Identities = 5/38 (13%), Positives = 20/38 (52%)

Query: 51  EEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFI 88
            + ++++     +R+++T +  +  ++E+Q     L +
Sbjct: 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153


>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
          macromolecular mimicry, translation; 1.81A {Escherichia
          coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
          Length = 365

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 51 EEIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92
            I+++   +  LR   +  A  +RLE++  +L   +++   + 
Sbjct: 9  NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPER 52


>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron
           oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP:
           b.33.1.2 d.129.3.3 PDB: 2b24_A
          Length = 470

 Score = 25.7 bits (55), Expect = 2.4
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 22  AFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHLR 64
             KD     +  +     RT    G    ++ EN +  T  + 
Sbjct: 342 VEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMG 384


>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism,
           pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1
           PDB: 1w37_A 1w3n_A* 1w3t_A*
          Length = 293

 Score = 25.5 bits (54), Expect = 2.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 65  EEITAIGKRLEKIEQQLADLEL 86
           EE   + K++E I  +L +L++
Sbjct: 269 EEERQLIKKVEGIRAKLVELKI 290


>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
           aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
           ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
          Length = 739

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 40  RTLNSMGVVRAEEIENVKRTTSHL 63
               S   +R +++++V RT  HL
Sbjct: 119 PLTISQPCIRLDDLDSVGRTGRHL 142


>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
          2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
          2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
          Length = 365

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 52 EIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92
          ++E + +    L    +I     RL+++E++L D  L+ + + 
Sbjct: 2  DLERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEA 44


>1n6m_A Claret segregational protein; NCD, microtubule, motor, kinesin,
          cell cycle; HET: ADP; 2.50A {Drosophila melanogaster}
          SCOP: c.37.1.9 PDB: 2ncd_A* 1cz7_A*
          Length = 409

 Score = 24.4 bits (52), Expect = 7.0
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 54 ENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
            +     HLR+    + +  E+   +L   +  + Q   E
Sbjct: 3  AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME 43


>3eqc_A Dual specificity mitogen-activated protein kinase kinase 1; MEK1
          kinase, acetylation, ATP-binding, disease mutation,
          nucleotide-binding; HET: 3BM AGS; 1.80A {Homo sapiens}
          PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 3eqb_A*
          2p55_A* 1s9j_A* 3dy7_A* 3dv3_A* 1s9i_A*
          Length = 360

 Score = 24.3 bits (52), Expect = 7.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)

Query: 71 GKRLEKI---EQQLADLELFINQKEK 93
          GK+LE++   EQQ   LE F+ QK+K
Sbjct: 1  GKKLEELELDEQQRKRLEAFLTQKQK 26


>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil,
          receptor-binding, triple beta-spiral, viral protein,
          virion, coiled coil, beta-barrel; 1.75A {Avian
          reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
          Length = 211

 Score = 24.4 bits (53), Expect = 7.2
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 38 IQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRLEKIE 78
          +Q T++      +  I N+K   S     IT +  R++ +E
Sbjct: 2  LQTTVDGN----STAISNLKSDISSNGLAITDLQDRVKSLE 38


>2b3t_B RF-1, peptide chain release factor 1; translation termination,
          methylation, conformational changes; HET: SAH; 3.10A
          {Escherichia coli} SCOP: e.38.1.1
          Length = 360

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 6/30 (20%), Positives = 17/30 (56%)

Query: 63 LREEITAIGKRLEKIEQQLADLELFINQKE 92
          +  ++ A+ +R E+++  L D +   +Q+ 
Sbjct: 5  IVAKLEALHERHEEVQALLGDAQTIADQER 34


>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A
          {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A*
          1ecn_A* 1eco_A*
          Length = 136

 Score = 23.9 bits (51), Expect = 9.5
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 50 AEEIENVKRTTSHLREEITAIGKRL 74
          A++I  V+ +   ++ +   I   +
Sbjct: 3  ADQISTVQASFDKVKGDPVGILYAV 27


>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
           {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
          Length = 752

 Score = 23.9 bits (51), Expect = 9.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 40  RTLNSMGVVRAEEIENVKRTTSHL 63
             + S   +R  +I+NV  T  H 
Sbjct: 119 PLVISQPSIRFTDIDNVGITGRHF 142


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.126    0.320 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 717,160
Number of extensions: 29039
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 101
Length of query: 94
Length of database: 5,693,230
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,214,346
Effective search space: 139073418
Effective search space used: 139073418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)