RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62] (94 letters) >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Score = 25.7 bits (56), Expect = 0.97 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 51 EEIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92 I+++ + LR + A +RLE++ +L +++ + Sbjct: 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPER 49 >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Score = 24.9 bits (53), Expect = 1.8 Identities = 6/32 (18%), Positives = 13/32 (40%) Query: 63 LREEITAIGKRLEKIEQQLADLELFINQKEKE 94 LR+ + + E+ +L + + Q E Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNME 32 >d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Score = 23.9 bits (51), Expect = 4.1 Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 69 AIGKRLEKIEQQLADLELFINQKE 92 A+ +R E+++ L D + +Q+ Sbjct: 1 ALHERHEEVQALLGDAQTIADQER 24 >d1ecda_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} Length = 136 Score = 23.6 bits (50), Expect = 4.4 Identities = 7/45 (15%), Positives = 18/45 (40%) Query: 50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94 A++I V+ + ++ + I + K + + K+ E Sbjct: 3 ADQISTVQASFDKVKGDPVGILYAVFKADPSIMAKFTQFAGKDLE 47 >d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]} Length = 157 Score = 23.1 bits (49), Expect = 6.0 Identities = 5/33 (15%), Positives = 14/33 (42%) Query: 42 LNSMGVVRAEEIENVKRTTSHLREEITAIGKRL 74 + + G + + + V++T L T+ + Sbjct: 6 IQAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDV 38 >d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 336 Score = 23.2 bits (50), Expect = 7.0 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 13/67 (19%) Query: 20 SDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENV---------KRTTSHLREEITAI 70 S++F D + ++A +IQR V + +R+ +++E+ + Sbjct: 273 SESFNDAKDKLRNYAS-RIQR---PFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTL 328 Query: 71 GKRLEKI 77 L I Sbjct: 329 AHALSAI 335 >d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 156 Score = 22.6 bits (48), Expect = 8.5 Identities = 8/47 (17%), Positives = 19/47 (40%) Query: 48 VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94 A ++ H ++ IG R+ + + LA ++ F+ + Sbjct: 86 ALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSK 132 >d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} Length = 150 Score = 22.7 bits (48), Expect = 8.6 Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 37 KIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRL 74 K+ N++ V A++ + ++ + L ++ G L Sbjct: 1 KVAELANAV-VSNADQKDLLRMSWGVLSVDMEGTGLML 37 >d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Score = 22.4 bits (48), Expect = 9.4 Identities = 5/48 (10%), Positives = 17/48 (35%) Query: 15 LASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSH 62 + + ++ A+S ++TL + ++ V+ + Sbjct: 28 IYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDY 75 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.126 0.320 Gapped Lambda K H 0.267 0.0533 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 309,230 Number of extensions: 12383 Number of successful extensions: 104 Number of sequences better than 10.0: 1 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 35 Length of query: 94 Length of database: 2,407,596 Length adjustment: 57 Effective length of query: 37 Effective length of database: 1,624,986 Effective search space: 60124482 Effective search space used: 60124482 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.3 bits)