RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780412|ref|YP_003064825.1| hypothetical protein
CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
          {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 25.7 bits (56), Expect = 0.97
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 51 EEIENVKRTTSHLRE--EITAIGKRLEKIEQQLADLELFINQKE 92
            I+++   +  LR   +  A  +RLE++  +L   +++   + 
Sbjct: 6  NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPER 49


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 24.9 bits (53), Expect = 1.8
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 63 LREEITAIGKRLEKIEQQLADLELFINQKEKE 94
          LR+    + +  E+   +L   +  + Q   E
Sbjct: 1  LRQRTEELLRCNEQQAAELETCKEQLFQSNME 32


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
          {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 23.9 bits (51), Expect = 4.1
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 69 AIGKRLEKIEQQLADLELFINQKE 92
          A+ +R E+++  L D +   +Q+ 
Sbjct: 1  ALHERHEEVQALLGDAQTIADQER 24


>d1ecda_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi
          thummi), fraction III [TaxId: 7154]}
          Length = 136

 Score = 23.6 bits (50), Expect = 4.4
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 50 AEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
          A++I  V+ +   ++ +   I   + K +  +         K+ E
Sbjct: 3  ADQISTVQASFDKVKGDPVGILYAVFKADPSIMAKFTQFAGKDLE 47


>d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina
          arenicola, also known as Molpadia arenicola [TaxId:
          7698]}
          Length = 157

 Score = 23.1 bits (49), Expect = 6.0
 Identities = 5/33 (15%), Positives = 14/33 (42%)

Query: 42 LNSMGVVRAEEIENVKRTTSHLREEITAIGKRL 74
          + + G +   + + V++T   L    T+    +
Sbjct: 6  IQAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDV 38


>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 336

 Score = 23.2 bits (50), Expect = 7.0
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 20  SDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENV---------KRTTSHLREEITAI 70
           S++F D   +  ++A  +IQR      V        +         +R+   +++E+  +
Sbjct: 273 SESFNDAKDKLRNYAS-RIQR---PFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTL 328

Query: 71  GKRLEKI 77
              L  I
Sbjct: 329 AHALSAI 335


>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase
           B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 156

 Score = 22.6 bits (48), Expect = 8.5
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 48  VRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
             A  ++       H   ++  IG R+  + + LA ++ F+     +
Sbjct: 86  ALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSK 132


>d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca
          inaequivalvis) [TaxId: 6561]}
          Length = 150

 Score = 22.7 bits (48), Expect = 8.6
 Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 37 KIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRL 74
          K+    N++ V  A++ + ++ +   L  ++   G  L
Sbjct: 1  KVAELANAV-VSNADQKDLLRMSWGVLSVDMEGTGLML 37


>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 151

 Score = 22.4 bits (48), Expect = 9.4
 Identities = 5/48 (10%), Positives = 17/48 (35%)

Query: 15 LASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSH 62
          +        + ++  A+S      ++TL    +    ++  V+    +
Sbjct: 28 IYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDY 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.126    0.320 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,230
Number of extensions: 12383
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 35
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)