BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780412|ref|YP_003064825.1| hypothetical protein
CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
(94 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 94
Score = 187 bits (474), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MSFRSNQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTT 60
MSFRSNQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTT
Sbjct: 1 MSFRSNQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTT 60
Query: 61 SHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
SHLREEITAIGKRLEKIEQQLADLELFINQKEKE
Sbjct: 61 SHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Length = 343
Score = 24.6 bits (52), Expect = 0.35, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 54 ENVKRTTSHLREEITAIGKRLEKIEQQLAD 83
E++ RT H R++ T + KRLE I + D
Sbjct: 88 ESILRT--HTRDQATNLAKRLESISSIVVD 115
>gi|254780803|ref|YP_003065216.1| hypothetical protein CLIBASIA_03470 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 165
Score = 21.6 bits (44), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 5 SNQFFQQASRLASCASDAFKDIS 27
SN FF+ R+ A FK+IS
Sbjct: 87 SNAFFKNIGRITLKAKYYFKEIS 109
>537021.9.peg.817_1
Length = 148
Score = 21.2 bits (43), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 28 KEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAIGKRL 74
K+ +S A+ ++R GV A HL +EI IGKR+
Sbjct: 54 KDTKSIAKALLKRFATLGGVFGAP---------LHLLQEINRIGKRV 91
>gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 413
Score = 20.0 bits (40), Expect = 9.0, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 47 VVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
VV E+ E V R+ I +IG E + D+E+ ++ + +
Sbjct: 82 VVDKEKFEKVVRSV------IRSIGYEQEGFHWETVDVEVLLHSQSSD 123
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.126 0.320
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,860
Number of Sequences: 1233
Number of extensions: 1513
Number of successful extensions: 13
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 94
length of database: 328,796
effective HSP length: 60
effective length of query: 34
effective length of database: 254,816
effective search space: 8663744
effective search space used: 8663744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)