HHsearch alignment for GI: 254780413 and conserved domain: COG0642
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=9.8e-34 Score=264.98 Aligned_cols=220 Identities=39% Similarity=0.634 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q ss_conf 99999985234531748999999999973126877888999999999998999999999999986643188-52000331
Q gi|254780413|r 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK-MNLHFEPV 662 (820)
Q Consensus 584 ~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~-~~l~~~~v 662 (820)
T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG---LL--DPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELV 188 (336)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999888589799999999997414---65--2599999999999999999999999999764457442234645
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 79999999999999998737808999737988468988899999999999888871889787999999804994999999
Q gi|254780413|r 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 (820)
Q Consensus 663 dl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~ 742 (820)
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~-~i~i~V~ 265 (336)
T COG0642 189 DLAELLEEVVRLLAPLAQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE-QVTISVE 265 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCC-EEEEEEE
T ss_conf 59999999999999876634848998237-6607860788999999999998998668-9859999996387-7999998
Q ss_pred ECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 7889789888664237718734787666788860689999999961986999978899539999963577788
Q gi|254780413|r 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 743 DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
T Consensus 266 D~G~Gi~~~~~~~if~~~~~~~~~~----~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~~~~ 334 (336)
T COG0642 266 DTGPGIPEEELERIFEPFFRTDKSR----SGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAPAAA 334 (336)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCC
T ss_conf 0789979889998818863479998----98863299999999987998999507999779999984776555