HHsearch alignment for GI: 254780413 and conserved domain: COG2202
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.32 E-value=0.00045 Score=47.76 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHH
Q ss_conf 33445678888999999999999999999997422043078599838721568998848960320786443345645627
Q gi|254780413|r 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 (820)
Q Consensus 428 ~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~ 507 (820)
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 167 (232)
T COG2202 89 LGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEE 167 (232)
T ss_pred HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCCCHH
T ss_conf 555301-1157788899998757999999995689679999099989997589999869798998277606540346304
Q ss_pred H-HHHHHHHHHCCCCCCEEEEEEEEECCCCCE-EEEEEEEEECCC---CCEEEEEEEEHHHHHHH
Q ss_conf 7-899999886069840223488876389728-999999887178---87399998651444434
Q gi|254780413|r 508 V-MNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPF---SSCYSLTMHDISEWKQE 567 (820)
Q Consensus 508 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~v~~Dite~k~~ 567 (820)
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 231 (232)
T COG2202 168 RRELELARALAE-GRGGPLEIEYRVRRKDGERVRWILSRISPVRDDGEIVGVVGIARDITERKQA 231 (232)
T ss_pred HHHHHHHHHHHC-CCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHH
T ss_conf 667899999752-4576405899999438979999998731324688577899998734689974