HHsearch alignment for GI: 254780413 and conserved domain: COG2202

>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.32  E-value=0.00045  Score=47.76  Aligned_cols=138  Identities=20%  Similarity=0.202  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHH
Q ss_conf             33445678888999999999999999999997422043078599838721568998848960320786443345645627
Q gi|254780413|r  428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS  507 (820)
Q Consensus       428 ~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~  507 (820)
T Consensus        89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  167 (232)
T COG2202          89 LGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEE  167 (232)
T ss_pred             HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCCCHH
T ss_conf             555301-1157788899998757999999995689679999099989997589999869798998277606540346304


Q ss_pred             H-HHHHHHHHHCCCCCCEEEEEEEEECCCCCE-EEEEEEEEECCC---CCEEEEEEEEHHHHHHH
Q ss_conf             7-899999886069840223488876389728-999999887178---87399998651444434
Q gi|254780413|r  508 V-MNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPF---SSCYSLTMHDISEWKQE  567 (820)
Q Consensus       508 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~v~~Dite~k~~  567 (820)
T Consensus       168 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  231 (232)
T COG2202         168 RRELELARALAE-GRGGPLEIEYRVRRKDGERVRWILSRISPVRDDGEIVGVVGIARDITERKQA  231 (232)
T ss_pred             HHHHHHHHHHHC-CCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHH
T ss_conf             667899999752-4576405899999438979999998731324688577899998734689974