HHsearch alignment for GI: 254780413 and conserved domain: COG3275
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.31 E-value=2.4e-09 Score=86.41 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEECHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEECHHHHH
Q ss_conf 999989999999999999866431885200-03317999999999999999873--780899973798846898889999
Q gi|254780413|r 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLH-FEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVK 705 (820)
Q Consensus 629 ~i~~~~~~l~~li~dlLd~srieaG~~~l~-~~~vdl~~lv~~~~~~~~~~a~~--~~i~l~~~~~~~lp~v~~D~~~l~ 705 (820)
T Consensus 386 ~IR~npdkAreLil~LS~yfR~---NL~~~~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~-f-- 459 (557)
T COG3275 386 VIRRNPDKARELILYLSTYFRY---NLENNTQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPS-F-- 459 (557)
T ss_pred HHCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCH-H--
T ss_conf 8617827999999999999998---734787158655999999999998998644884479994687775336861-6--
Q ss_pred HHHHHHHHHHHHCC----CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf 99999998888718----89787999999804994999999788978988866423771873478766678886068999
Q gi|254780413|r 706 QIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 (820)
Q Consensus 706 Qvl~NLl~NAik~t----~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~ 781 (820)
T Consensus 460 -ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~-~l~i~VeDng~li~p~------------------~~~g~giGL~nv 519 (557)
T COG3275 460 -ILQPLVENAIKHGISQLKDTGRVTISVEKEDA-DLRIEVEDNGGLIQPD------------------EEDGTGIGLANV 519 (557)
T ss_pred -HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECC-EEEEEEECCCCCCCCC------------------CCCCCCHHHHHH
T ss_conf -67788888887536444208817999998088-3899994188776997------------------788987178899
Q ss_pred HHHHHHCCC---EEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 999996198---699997889953999996357778
Q gi|254780413|r 782 KAMVDANMG---KFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 782 k~iVe~hgG---~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
T Consensus 520 ~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 520 HKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRTA 555 (557)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf 999998648210313786167786899994476556