HHsearch alignment for GI: 254780413 and conserved domain: COG3275

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.31  E-value=2.4e-09  Score=86.41  Aligned_cols=160  Identities=19%  Similarity=0.259  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEECHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEECHHHHH
Q ss_conf             999989999999999999866431885200-03317999999999999999873--780899973798846898889999
Q gi|254780413|r  629 YIDRSGNLVLDIVNDLLDISKIESGKMNLH-FEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVK  705 (820)
Q Consensus       629 ~i~~~~~~l~~li~dlLd~srieaG~~~l~-~~~vdl~~lv~~~~~~~~~~a~~--~~i~l~~~~~~~lp~v~~D~~~l~  705 (820)
T Consensus       386 ~IR~npdkAreLil~LS~yfR~---NL~~~~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~-f--  459 (557)
T COG3275         386 VIRRNPDKARELILYLSTYFRY---NLENNTQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPS-F--  459 (557)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCH-H--
T ss_conf             8617827999999999999998---734787158655999999999998998644884479994687775336861-6--


Q ss_pred             HHHHHHHHHHHHCC----CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf             99999998888718----89787999999804994999999788978988866423771873478766678886068999
Q gi|254780413|r  706 QIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA  781 (820)
Q Consensus       706 Qvl~NLl~NAik~t----~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~  781 (820)
T Consensus       460 -ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~-~l~i~VeDng~li~p~------------------~~~g~giGL~nv  519 (557)
T COG3275         460 -ILQPLVENAIKHGISQLKDTGRVTISVEKEDA-DLRIEVEDNGGLIQPD------------------EEDGTGIGLANV  519 (557)
T ss_pred             -HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECC-EEEEEEECCCCCCCCC------------------CCCCCCHHHHHH
T ss_conf             -67788888887536444208817999998088-3899994188776997------------------788987178899


Q ss_pred             HHHHHHCCC---EEEEEEECCCCEEEEEEECCCCCC
Q ss_conf             999996198---699997889953999996357778
Q gi|254780413|r  782 KAMVDANMG---KFYIFSTPAKGTLIEIIFPLYDTS  814 (820)
Q Consensus       782 k~iVe~hgG---~i~v~S~pG~Gt~f~v~lP~~~~~  814 (820)
T Consensus       520 ~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~~  555 (557)
T COG3275         520 HKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRTA  555 (557)
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf             999998648210313786167786899994476556