HHsearch alignment for GI: 254780413 and conserved domain: COG3850
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=99.57 E-value=8.1e-12 Score=104.50 Aligned_cols=189 Identities=19% Similarity=0.277 Sum_probs=147.5
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 8523453174899999999997---3126877888999999999998999999999999986643188520003317999
Q gi|254780413|r 590 ARVSHEIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 590 a~vsHElrtPL~~I~g~~~~l~---~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCHHH
T ss_conf 9999987789999999999999999842786566879999999999999999999999998787-------605676389
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 99999999999987378089997379884689888---999999999998888718897879999998049949999997
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADL---RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~---~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~D 743 (820)
T Consensus 447 AL~~~~~~f~~q---tg~~~~l~~--qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~~~-g~~~~~VeD 519 (574)
T COG3850 447 ALEQMLAEFSNQ---TGITVTLDY--QLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQND-GQVTLTVED 519 (574)
T ss_pred HHHHHHHHHHHC---CCCEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECC-CEEEEEEEE
T ss_conf 999999999734---697388725--6898899878999999999999998998526-675899998659-648999942
Q ss_pred CCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 8897898886642377187347876667888606899999999619869999788995399999635
Q gi|254780413|r 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 744 tG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
T Consensus 520 nG~Gi~~~-----------~e~------~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~ 568 (574)
T COG3850 520 NGVGIDEA-----------AEP------SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPP 568 (574)
T ss_pred CCCCCCCC-----------CCC------CC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECC
T ss_conf 88377975-----------677------88-723699999999725757776459998179999564