HHsearch alignment for GI: 254780413 and conserved domain: COG4251

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].
Probab=100.00  E-value=4.2e-45  Score=348.53  Aligned_cols=235  Identities=23%  Similarity=0.414  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65446688789999999999852345317489999999999731268778889999999999989999999999999866
Q gi|254780413|r  570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK  649 (820)
Q Consensus       570 el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sr  649 (820)
T Consensus       509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~-~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~  587 (750)
T COG4251         509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSD-ALDEEAKEFITFISRLTSLMQQLIDDLLTYSK  587 (750)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989988765158999999986104667999999999766634366-65758899999999999999999997742312


Q ss_pred             HHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-CEEEEE
Q ss_conf             4318852000331799999999999999987378089997379884689888999999999998888718897-879999
Q gi|254780413|r  650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIIS  728 (820)
Q Consensus       650 ieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g-g~v~v~  728 (820)
T Consensus       588 l~--~~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~  662 (750)
T COG4251         588 LG--LTEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEIS  662 (750)
T ss_pred             HC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEC--C-CCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEE
T ss_conf             05--545777775267899999973453112565247862--5-644640888999999998765521078889815885


Q ss_pred             EEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             99804994999999788978988866423771873478766678886068999999996198699997889953999996
Q gi|254780413|r  729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF  808 (820)
Q Consensus       729 ~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~l  808 (820)
T Consensus       663 ~~r~-ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~l  739 (750)
T COG4251         663 AERQ-EDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTL  739 (750)
T ss_pred             EECC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC--HHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEE
T ss_conf             3325-87307985478777698999888998870375--65514777338999999998484588860478741689984


Q ss_pred             CCCCC
Q ss_conf             35777
Q gi|254780413|r  809 PLYDT  813 (820)
Q Consensus       809 P~~~~  813 (820)
T Consensus       740 p~~~~  744 (750)
T COG4251         740 PVGGE  744 (750)
T ss_pred             ECCCC
T ss_conf             05886