HHsearch alignment for GI: 254780413 and conserved domain: COG4251
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].
Probab=100.00 E-value=4.2e-45 Score=348.53 Aligned_cols=235 Identities=23% Similarity=0.414 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65446688789999999999852345317489999999999731268778889999999999989999999999999866
Q gi|254780413|r 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 (820)
Q Consensus 570 el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sr 649 (820)
T Consensus 509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~-~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSD-ALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989988765158999999986104667999999999766634366-65758899999999999999999997742312
Q ss_pred HHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-CEEEEE
Q ss_conf 4318852000331799999999999999987378089997379884689888999999999998888718897-879999
Q gi|254780413|r 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIIS 728 (820)
Q Consensus 650 ieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g-g~v~v~ 728 (820)
T Consensus 588 l~--~~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~ 662 (750)
T COG4251 588 LG--LTEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEIS 662 (750)
T ss_pred HC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEC--C-CCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEE
T ss_conf 05--545777775267899999973453112565247862--5-644640888999999998765521078889815885
Q ss_pred EEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99804994999999788978988866423771873478766678886068999999996198699997889953999996
Q gi|254780413|r 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 (820)
Q Consensus 729 ~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~l 808 (820)
T Consensus 663 ~~r~-ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~l 739 (750)
T COG4251 663 AERQ-EDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTL 739 (750)
T ss_pred EECC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC--HHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEE
T ss_conf 3325-87307985478777698999888998870375--65514777338999999998484588860478741689984
Q ss_pred CCCCC
Q ss_conf 35777
Q gi|254780413|r 809 PLYDT 813 (820)
Q Consensus 809 P~~~~ 813 (820)
T Consensus 740 p~~~~ 744 (750)
T COG4251 740 PVGGE 744 (750)
T ss_pred ECCCC
T ss_conf 05886