HHsearch alignment for GI: 254780413 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=100.00 E-value=4.4e-43 Score=333.43 Aligned_cols=339 Identities=21% Similarity=0.320 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999742204307859983872156899884896032078644334564562778999998860698
Q gi|254780413|r 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 (820)
Q Consensus 442 ~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (820)
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap-----~~~~vf~~~~a~~~ 434 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIAP-----ELEEVFAEAGAAAR 434 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHHHHHH-----HHHHHHHHHHHHCC
T ss_conf 8788899999889999815850389974787077626017888468706764402664213-----78999997654038
Q ss_pred CCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 40223488876389728999999887178873999986514444345765446688789999999999852345317489
Q gi|254780413|r 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 (820)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~ 601 (820)
T Consensus 435 ~~~~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQ------------Rs~AW~dVArRIAHEIKNPLT 502 (712)
T COG5000 435 TDKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQ------------RSAAWGDVARRIAHEIKNPLT 502 (712)
T ss_pred CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHH------------HHHHHHHHHHHHHHHHCCCCC
T ss_conf 77420100014787415666753214446885699963508999999------------987899999999887249986
Q ss_pred HHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf 9999999997312687788--89999999999989999999999999866431885200033179999999999999998
Q gi|254780413|r 602 AIIGFSEVIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 (820)
Q Consensus 602 ~I~g~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a 679 (820)
T Consensus 503 PIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afAR----mP~p~~e~~dL~~ll~e~~~L~e~~- 577 (712)
T COG5000 503 PIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFAR----MPAPKLEKSDLRALLKEVSFLYEIG- 577 (712)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHHHHHHCC-
T ss_conf 22002899998837412348999999999999999999999999998714----8998777422999999999999626-
Q ss_pred HHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCC-------CCEEEEEEEECCCCEEEEEEEECCCCCCHHH
Q ss_conf 737808999737988468988899999999999888871889-------7879999998049949999997889789888
Q gi|254780413|r 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-------GGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 (820)
Q Consensus 680 ~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~-------gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~ 752 (820)
T Consensus 578 -~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~-~~~~g~i~v~V~DNGkG~p~e~ 655 (712)
T COG5000 578 -NDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL-DDADGRIVVDVIDNGKGFPREN 655 (712)
T ss_pred -CCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-ECCCCEEEEEEECCCCCCCHHH
T ss_conf -87769975318986253248999999999998719987531013467764389998-4479849999810898799678
Q ss_pred HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CCCEEEEEEECC
Q ss_conf 6642377187347876667888606899999999619869999788-995399999635
Q gi|254780413|r 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 (820)
Q Consensus 753 ~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p-G~Gt~f~v~lP~ 810 (820)
T Consensus 656 r~r~~EPYvTtr------~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 656 RHRALEPYVTTR------EKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred HHHHCCCCEECC------CCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 643236714216------56666239999999996388277247899997679998365