HHsearch alignment for GI: 254780413 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=426.74 Aligned_cols=356 Identities=24% Similarity=0.390 Sum_probs=292.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7888899-999999999999999999742204307859983872156899884896032078644334564562778999
Q gi|254780413|r 434 EPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 (820)
Q Consensus 434 ~~dit~~-~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~ 512 (820)
T Consensus 92 fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~d~y~~~dL 171 (459)
T COG5002 92 FNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLKIEDTYTFEDL 171 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCHHHHHCCCCCEEHHHH
T ss_conf 97899999999876788888899899987076576457786899350799984867787716537888577543028888
Q ss_pred HHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECC--CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988606984022348887638972899999988717--88739999865144443457654466887899999999998
Q gi|254780413|r 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 (820)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla 590 (820)
T Consensus 172 ~e~----~~s~lld~~~---~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~Er--------------Refva 230 (459)
T COG5002 172 VEK----NDSLLLDSSD---EEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERER--------------REFVA 230 (459)
T ss_pred HHC----CCCEEEEECC---CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHH--------------HHHHH
T ss_conf 725----9828986047---88637999988888511466440699873143878889999--------------99988
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH
Q ss_conf 5234531748999999999973126877888-999999999998999999999999986643188520003317999999
Q gi|254780413|r 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 (820)
Q Consensus 591 ~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~-~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~ 669 (820)
T Consensus 231 nvSHElRTPltsmksyLEALe~---ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~fl~ 307 (459)
T COG5002 231 NVSHELRTPLTSMKSYLEALEE---GAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLN 307 (459)
T ss_pred HCCHHHCCCHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6140314736789999999746---8744712326899874788999999999998772576325666578887488999
Q ss_pred HHHHHHHHHHHHCCEE-EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCC
Q ss_conf 9999999998737808-999737988468988899999999999888871889787999999804994999999788978
Q gi|254780413|r 670 EAISLVQLYANEKRIL-IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 (820)
Q Consensus 670 ~~~~~~~~~a~~~~i~-l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI 748 (820)
T Consensus 308 ~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-~~~v~iSI~D~G~gI 386 (459)
T COG5002 308 EIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-ETWVEISISDQGLGI 386 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCEEEEEECCCCCCC
T ss_conf 9999999987567788999608888648996706899999999877752489997399999630-758999974688899
Q ss_pred CHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 988866423771873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 749 ~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
T Consensus 387 Pk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~~ 452 (459)
T COG5002 387 PKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGEA 452 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 840689999988522366540378776129999999997098577760458861799995466766