HHsearch alignment for GI: 254780413 and conserved domain: PRK03660
>PRK03660 anti-sigma F factor; Provisional.
Probab=99.51 E-value=3.2e-13 Score=114.79 Aligned_cols=103 Identities=26% Similarity=0.419 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCC
Q ss_conf 88999999999998888718---897879999998049949999997889789888664237718734787666788860
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGL 776 (820)
T Consensus 36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~-~~~l~I~V~D~G~Gid~--~~~~~~P~~t~~~~----~~~~Gl 108 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIE-DEELEITVRDEGKGIED--VEEARQPLFTTKPE----LERSGM 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCC--HHHCCCCCCCCCCC----CCCCCH
T ss_conf 999999999999999998603679992799999980-99999999973789473--76643887766876----675640
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 6899999999619869999788995399999635777
Q gi|254780413|r 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 777 GLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
T Consensus 109 Gl~li~~Lm----DeVei~s~~g~GTtV~m~k~l~~~ 141 (146)
T PRK03660 109 GFTFMESFM----DEVEVESEPGKGTTIRMKKKLKKS 141 (146)
T ss_pred HHHHHHHHC----CEEEEEECCCCCEEEEEEEEECCC
T ss_conf 589999838----869999559997899999997554