HHsearch alignment for GI: 254780413 and conserved domain: PRK09470

>PRK09470 cpxA two-component sensor protein; Provisional.
Probab=100.00  E-value=0  Score=388.65  Aligned_cols=241  Identities=22%  Similarity=0.351  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r  563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN  642 (820)
Q Consensus       563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~  642 (820)
T Consensus       221 Ei~~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~-~---~~---~~l~~i~~e~~rl~~li~  293 (461)
T PRK09470        221 EFRAAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQ-G---ES---KELERIETEAQRLDSMIN  293 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-C---CH---HHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999998645553278999999999864044-7---85---999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r  643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG  722 (820)
Q Consensus       643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g  722 (820)
T Consensus       294 ~lL~lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~-  371 (461)
T PRK09470        294 DLLVLSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT-  371 (461)
T ss_pred             HHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC-
T ss_conf             999997620546-555651539999999999999999975976999727875489978999999999999999974899-


Q ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf             87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r  723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT  802 (820)
Q Consensus       723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt  802 (820)
T Consensus       372 -~i~v~~~~~~-~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~  449 (461)
T PRK09470        372 -KIEVGFSVDK-DGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGL  449 (461)
T ss_pred             -CEEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf             -5899999999-99999999779998999998762797228988889999713889999999998299899997799856


Q ss_pred             EEEEEECCCCCC
Q ss_conf             999996357778
Q gi|254780413|r  803 LIEIIFPLYDTS  814 (820)
Q Consensus       803 ~f~v~lP~~~~~  814 (820)
T Consensus       450 ~~~i~LPl~~~~  461 (461)
T PRK09470        450 RLTIWLPLYKRS  461 (461)
T ss_pred             EEEEEEECCCCC
T ss_conf             999996588999