HHsearch alignment for GI: 254780413 and conserved domain: PRK09835
>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00 E-value=0 Score=405.56 Aligned_cols=243 Identities=24% Similarity=0.363 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
T Consensus 240 El~~La~~fN~M~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~~---~~~~~~~~l~~~~~e~~rl~~lv~ 316 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSR---SQKELEDVLYSNLEELTRMAKMVS 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999889871899999999999853899---869999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
T Consensus 317 ~lL~lar~e~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NAikys~~g 394 (482)
T PRK09835 317 DMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNALRYTPEG 394 (482)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999987743588766673456999999999999999986892899827--870899879999999999999999848999
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
T Consensus 395 ~~i~i~~~-~~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt 472 (482)
T PRK09835 395 EAIVVRCQ-TVDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGT 472 (482)
T ss_pred CEEEEEEE-EECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCE
T ss_conf 86999999-829989999996587889899987667975189888899994648999999999982998999963-9918
Q ss_pred EEEEEECCCC
Q ss_conf 9999963577
Q gi|254780413|r 803 LIEIIFPLYD 812 (820)
Q Consensus 803 ~f~v~lP~~~ 812 (820)
T Consensus 473 ~f~i~lPr~~ 482 (482)
T PRK09835 473 RFVISLPRLE 482 (482)
T ss_pred EEEEEEECCC
T ss_conf 9999930789