HHsearch alignment for GI: 254780413 and conserved domain: PRK09959
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional.
Probab=100.00 E-value=0 Score=582.18 Aligned_cols=371 Identities=22% Similarity=0.301 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCC--CHHHHH
Q ss_conf 678888999999999999999999997422043078599838721568998848960320786443345645--627789
Q gi|254780413|r 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMN 510 (820)
Q Consensus 433 ~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~--~~~~~~ 510 (820)
T Consensus 557 L~r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1197)
T PRK09959 557 LLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTH 636 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999998899999998369987699825561224118889875231444213565322221567777778
Q ss_pred HHHHHHHCCCCCCEEEEEEE-EECCCCCEEEEEEEEEE--CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998860698402234888-76389728999999887--1788739999865144443457654466887899999999
Q gi|254780413|r 511 HYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 (820)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~ 587 (820)
T Consensus 637 ~~~~~~~~~~--~~~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~AKS~ 714 (1197)
T PRK09959 637 EVTAETKENR--TIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVAKSQ 714 (1197)
T ss_pred HHHHHHHHCC--CCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987531012--10001453057754236775310003764444010115464128999999999999999999888888
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 998523453174899999999997312687788899-9999999998999999999999986643188520003317999
Q gi|254780413|r 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 588 fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
T Consensus 715 FLA~MSHEIRTPLn~IiG~~eLL~~~~l----~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l~~ 790 (1197)
T PRK09959 715 FLATMSHEIRTPISSIMGFLELLSGSGL----SKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPT 790 (1197)
T ss_pred HHHHCCHHHCCHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf 8874735316568999999999846899----989999999999999999999888889998985388621452017999
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCC--CEEEEEE
Q ss_conf 99999999999987378089997379884-689888999999999998888718897879999998--049--9499999
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSN--EEVILRV 741 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~--~~~--~~v~i~V 741 (820)
T Consensus 791 li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~-V~i~~~~~~~~~~~~~l~~~V 869 (1197)
T PRK09959 791 LVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKMTI 869 (1197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEEECCCCEEEEEEEE
T ss_conf 9999999999999967968999558987513526788999999999875374687978-999999865179806999999
Q ss_pred EECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 97889789888664237718734787666788860689999999961986999978899539999963577
Q gi|254780413|r 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 (820)
Q Consensus 742 ~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~ 812 (820)
T Consensus 870 ~DTGiGI~~~~~~~iF~pF~Q~s--~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~~ 938 (1197)
T PRK09959 870 MDSGSGLSQEEQQQLFKRYSQTS--AGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI 938 (1197)
T ss_pred EECCCCCCHHHHHHHCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 97787889889975367862477--8878898483599999999987992899935999449999997564