HHsearch alignment for GI: 254780413 and conserved domain: PRK10604

>PRK10604 sensor protein RstB; Provisional.
Probab=100.00  E-value=0  Score=379.44  Aligned_cols=239  Identities=19%  Similarity=0.296  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r  563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN  642 (820)
Q Consensus       563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~  642 (820)
T Consensus       190 Ei~~La~~FN~Ma~~l~~~~~~~r~f~a~vSHELRTPLt~i~~~lell~~-~---~--~~e---~~~l~~~i~~l~~lv~  260 (433)
T PRK10604        190 SFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN-L---S--AAE---SQALNRDIGQLEALIE  260 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCC-C---C--HHH---HHHHHHHHHHHHHHHH
T ss_conf             59999999999999999999999999874024431689999999997049-9---8--578---9999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r  643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG  722 (820)
Q Consensus       643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g  722 (820)
T Consensus       261 ~lL~larl~~~~~~l~~~~~dl~~~i~~~~~~~~~~~~~~~i~l~~~--~~~~~~~~D~~~l~~~l~NLl~NA~kys--~  336 (433)
T PRK10604        261 ELLTYARLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLKTP--HQGDYGALDMRLMERVLDNLLNNALRYS--H  336 (433)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC--CCCCEEEECHHHHHHHHHHHHHHHHHCC--C
T ss_conf             99999763689787877023699999999999997655996799717--9886698789999999999999998718--9


Q ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf             87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r  723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT  802 (820)
Q Consensus       723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt  802 (820)
T Consensus       337 ~~v~v~~~~~-~~~~~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa  415 (433)
T PRK10604        337 STVETSLLLD-GDQATLIVEDDGPGIAPEERERIFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDTSELGGA  415 (433)
T ss_pred             CCEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf             9789999999-999999999778788989999865794528888899999613889999999998199899996699847


Q ss_pred             EEEEEECCCCCCC
Q ss_conf             9999963577788
Q gi|254780413|r  803 LIEIIFPLYDTSH  815 (820)
Q Consensus       803 ~f~v~lP~~~~~~  815 (820)
T Consensus       416 ~f~i~LP~~~~~~  428 (433)
T PRK10604        416 RFSFSWPVWHNIP  428 (433)
T ss_pred             EEEEEECCCCCCC
T ss_conf             9999977999999