HHsearch alignment for GI: 254780413 and conserved domain: PRK10755
>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00 E-value=0 Score=364.70 Aligned_cols=232 Identities=18% Similarity=0.288 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
T Consensus 121 El~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~--~---~~----~~~~~~~i~rl~~li~ 191 (355)
T PRK10755 121 EIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTH--H---ID----VAPLIARLDQMMHSVS 191 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--C---CC----HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999757774038999999999973757--5---31----9999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEEC-HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999986643188520003317-9999999999999998737808999737988468988899999999999888871889
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVS-LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vd-l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~ 721 (820)
T Consensus 192 ~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~ 271 (355)
T PRK10755 192 QLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPE 271 (355)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999858886434544213259999999999999999975995999658877189968999999999999989974899
Q ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf 78799999980499499999978897898886642377187347876667888606899999999619869999788-99
Q gi|254780413|r 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AK 800 (820)
Q Consensus 722 gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p-G~ 800 (820)
T Consensus 272 g~~I~I~l~-~-~~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~gg 345 (355)
T PRK10755 272 GSNITIKLQ-E-DGGAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERS 345 (355)
T ss_pred CCEEEEEEE-E-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 976999999-7-79889999987999897999885588613899----99987589999999999919989999879898
Q ss_pred CEEEEEEEC
Q ss_conf 539999963
Q gi|254780413|r 801 GTLIEIIFP 809 (820)
Q Consensus 801 Gt~f~v~lP 809 (820)
T Consensus 346 Gt~~~v~LP 354 (355)
T PRK10755 346 GTRAWVWLK 354 (355)
T ss_pred EEEEEEEEC
T ss_conf 789999947