HHsearch alignment for GI: 254780413 and conserved domain: PRK10815
>PRK10815 sensor protein PhoQ; Provisional.
Probab=100.00 E-value=2.8e-45 Score=348.94 Aligned_cols=239 Identities=17% Similarity=0.237 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
T Consensus 244 Ei~~La~~fN~ml~rl~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~~---~~~---~~~~~~le~i~Rl~~li~ 317 (484)
T PRK10815 244 ELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEKM---SVS---DAEPVMLEQISRISQQIG 317 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCC---CHH---HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999854436434569999999999746998---878---999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
T Consensus 318 ~lL~~a~~~~~~~~~~~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~~ 396 (484)
T PRK10815 318 YYLHRASMRGEGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLEF 396 (484)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999987038986302555669999999999999999964977999648760-795578999999999999999728886
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
T Consensus 397 --v~I~~~~~-~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~----r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~ 469 (484)
T PRK10815 397 --VEISARQT-DEHLHIVVEDDGPGIPESKRELIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVASESPLGGA 469 (484)
T ss_pred --EEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf --79999996-999999999739999989998624688779999----99857679999999998899899995699924
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999963577788
Q gi|254780413|r 803 LIEIIFPLYDTSH 815 (820)
Q Consensus 803 ~f~v~lP~~~~~~ 815 (820)
T Consensus 470 ~f~I~F~~~~~~p 482 (484)
T PRK10815 470 RMEVIFGRQHSTP 482 (484)
T ss_pred EEEEEECCCCCCC
T ss_conf 8999973877899