HHsearch alignment for GI: 254780413 and conserved domain: PRK10815

>PRK10815 sensor protein PhoQ; Provisional.
Probab=100.00  E-value=2.8e-45  Score=348.94  Aligned_cols=239  Identities=17%  Similarity=0.237  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r  563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN  642 (820)
Q Consensus       563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~  642 (820)
T Consensus       244 Ei~~La~~fN~ml~rl~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~~---~~~---~~~~~~le~i~Rl~~li~  317 (484)
T PRK10815        244 ELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEKM---SVS---DAEPVMLEQISRISQQIG  317 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCC---CHH---HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999854436434569999999999746998---878---999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r  643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG  722 (820)
Q Consensus       643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g  722 (820)
T Consensus       318 ~lL~~a~~~~~~~~~~~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~~  396 (484)
T PRK10815        318 YYLHRASMRGEGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLEF  396 (484)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999987038986302555669999999999999999964977999648760-795578999999999999999728886


Q ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf             87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r  723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT  802 (820)
Q Consensus       723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt  802 (820)
T Consensus       397 --v~I~~~~~-~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~----r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~  469 (484)
T PRK10815        397 --VEISARQT-DEHLHIVVEDDGPGIPESKRELIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVASESPLGGA  469 (484)
T ss_pred             --EEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf             --79999996-999999999739999989998624688779999----99857679999999998899899995699924


Q ss_pred             EEEEEECCCCCCC
Q ss_conf             9999963577788
Q gi|254780413|r  803 LIEIIFPLYDTSH  815 (820)
Q Consensus       803 ~f~v~lP~~~~~~  815 (820)
T Consensus       470 ~f~I~F~~~~~~p  482 (484)
T PRK10815        470 RMEVIFGRQHSTP  482 (484)
T ss_pred             EEEEEECCCCCCC
T ss_conf             8999973877899