HHsearch alignment for GI: 254780413 and conserved domain: PRK10935
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional.
Probab=99.87 E-value=2.1e-18 Score=152.76 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=142.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 8523453174899999999997----312687788899999999999899999999999998664318852000331799
Q gi|254780413|r 590 ARVSHEIRTPLTAIIGFSEVIK----NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 (820)
Q Consensus 590 a~vsHElrtPL~~I~g~~~~l~----~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~ 665 (820)
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl-------~l~~~~L~ 438 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRL-------TIQEANLG 438 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHH
T ss_conf 89999844126657899999999999874225653889999999999999999999999998322-------67756879
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHH---HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 99999999999998737808999737988468988899---999999999888871889787999999804994999999
Q gi|254780413|r 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS---VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 (820)
Q Consensus 666 ~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~---l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~ 742 (820)
T Consensus 439 ~AL~~~~~~~~~q---~~~~i~l~~--~l~~~~l~~~~~i~llrIvqEALtN~~KHA~-A~~V~V~~~~~~~~~v~l~V~ 512 (568)
T PRK10935 439 SALEEMLDQLRNQ---TSAKITLDC--RLPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPDGEVTVSIR 512 (568)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCEEEEEEE
T ss_conf 9999999999751---194699970--6887778888999999999999999998089-987999999748987999997
Q ss_pred ECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 788978988866423771873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 743 DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
T Consensus 513 DnG~Gf~~~~------------------~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~~~~ 566 (568)
T PRK10935 513 DDGVGIGELK------------------EPEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQQEP 566 (568)
T ss_pred ECCCCCCCCC------------------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 7994789878------------------88998575999999996699899997799966999985898889