HHsearch alignment for GI: 254780413 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=100.00 E-value=0 Score=455.25 Aligned_cols=328 Identities=20% Similarity=0.328 Sum_probs=268.7
Q ss_pred HHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECC
Q ss_conf 99997422043078599838721568998848960320786443345645627789999988606984022348887638
Q gi|254780413|r 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 (820)
Q Consensus 455 ~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (820)
T Consensus 10 ~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~ 85 (348)
T PRK11073 10 GQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLN--IELMQESLQAGQGFTDN-EVTL-VI 85 (348)
T ss_pred HHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCC--HHHHHHHHHCCCCCCCC-EEEE-EE
T ss_conf 99998660796499897970128399999978598998599689984665301--89999999738974132-3999-98
Q ss_pred CCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 97289999998871788739999865144443457654466887899999999998523453174899999999997312
Q gi|254780413|r 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 (820)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~ 614 (820)
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~l~~~~di~~~k~l~~e~~~~~~~-----~~~~e~~~~iaHelrnPL~~I~g~~~ll~~~- 158 (348)
T PRK11073 86 DGRSHILSLTAQRLPE-GMILLEMAPMDNQRRLSQEQLQHAQQ-----VAARDLVRGLAHEIKNPLGGLRGAAQLLSKA- 158 (348)
T ss_pred CCEEEEEEEEEEECCC-CEEEEEEEECHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_conf 9969999999998258-68999999627999999999999999-----9999999840187478579999999999741-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 68778889999999999989999999999999866431885200033179999999999999998737808999737988
Q gi|254780413|r 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 (820)
Q Consensus 615 ~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~l 694 (820)
T Consensus 159 ---~~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~ 228 (348)
T PRK11073 159 ---LPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITESIHKVAERVVQLVSLEL-PDNVRLIRDYDPSL 228 (348)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCC
T ss_conf ---79989999999999999999999999864412688------775479999999999999856-57809999607888
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEECCC---------CEEEEEEEECCCCCCHHHHHHHCCCCEEEC
Q ss_conf 468988899999999999888871-8897879999998049---------949999997889789888664237718734
Q gi|254780413|r 695 PRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSN---------EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 (820)
Q Consensus 695 p~v~~D~~~l~Qvl~NLl~NAik~-t~~gg~v~v~~~~~~~---------~~v~i~V~DtG~GI~~~~~~~iFepF~~~~ 764 (820)
T Consensus 229 ~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf~ttk 308 (348)
T PRK11073 229 PELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 72644687889999999999999836699779999964333221453233048999999088789899997377836799
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 7876667888606899999999619869999788995399999635
Q gi|254780413|r 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 765 ~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
T Consensus 309 ------~~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl 347 (348)
T PRK11073 309 ------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ------CCCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEE
T ss_conf ------898177899999999986998999982891-999999963