HHsearch alignment for GI: 254780413 and conserved domain: PRK11466
>PRK11466 hybrid sensory histidine kinase TorS; Provisional.
Probab=100.00 E-value=0 Score=516.24 Aligned_cols=238 Identities=32% Similarity=0.523 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65446688789999999999852345317489999999999731268778889999999999989999999999999866
Q gi|254780413|r 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 (820)
Q Consensus 570 el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sr 649 (820)
T Consensus 429 ~~~~Ar~~AE~AnrAKS~FLA~MSHEIRTPLNgIlG~~eLL~~~~l----~~~qr~~l~~I~~s~~~LL~lInDILD~Sk 504 (912)
T PRK11466 429 EHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA----LNAQRDDLRAITDSGESLLTILNDILDYSA 504 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999987139767759999999999847999----989999999999999999999999999999
Q ss_pred HHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 4318--852000331799999999999999987378089997379884-6898889999999999988887188978799
Q gi|254780413|r 650 IESG--KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 (820)
Q Consensus 650 ieaG--~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~ 726 (820)
T Consensus 505 iEaG~~~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKFT~~G-~V~ 583 (912)
T PRK11466 505 IEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRFTDEG-SIV 583 (912)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-EEE
T ss_conf 8189981388611568999999999999999983797899972799986086358899999999999870618996-799
Q ss_pred EEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf 99998049949999997889789888664237718734787666788860689999999961986999978899539999
Q gi|254780413|r 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 (820)
Q Consensus 727 v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v 806 (820)
T Consensus 584 l~~~-~~~~~l~~~V~DTGiGI~~e~~~~IF~~F~Q~~----~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G~GS~F~~ 658 (912)
T PRK11466 584 LRSR-TDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 (912)
T ss_pred EEEE-ECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
T ss_conf 9999-869789999850899999999998844761588----99899266899999999987997999716998728999
Q ss_pred EECCCCCCCCC
Q ss_conf 96357778886
Q gi|254780413|r 807 IFPLYDTSHPH 817 (820)
Q Consensus 807 ~lP~~~~~~p~ 817 (820)
T Consensus 659 ~LPl~~~~~~~ 669 (912)
T PRK11466 659 RLPLRHATAPV 669 (912)
T ss_pred EEECCCCCCCC
T ss_conf 99777888787