HHsearch alignment for GI: 254780413 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=99.70 E-value=5.8e-16 Score=134.85 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=96.0
Q ss_pred EEEEEC---CCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCC--HHHHHHHHHCCCCCCCEEEEECCCCCCCEE
Q ss_conf 599997---999099966789966289978974996888204016882--389999986379616716886147988379
Q gi|254780413|r 85 FTWNID---AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159 (820)
Q Consensus 85 fvw~~D---~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p--~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~ 159 (820)
T Consensus 40 ~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~~~~L~~p~~-~~~~~~~~~~~i~~~~~~~~E~~n~rKDG~~~w- 117 (538)
T PRK13557 40 PMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPET-DRATVADVRDAIAERREIATEILNYRKDGSSFW- 117 (538)
T ss_pred CEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEE-
T ss_conf 389935899998799983999998795999986999877089889-999999999999759936879999879999999-
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 9998630015688736305566898522103779999986324
Q gi|254780413|r 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 (820)
Q Consensus 160 ~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~ 202 (820)
T Consensus 118 -~~~~i~pv~d~~G~~~~~--~~i~~DITerk~~E~~L~qaqk 157 (538)
T PRK13557 118 -NALFVSPVYNDAGDLVYF--FGSQLDVSRRRDAEDALRQAQK 157 (538)
T ss_pred -EEEEEEEEECCCCCEEEE--EEEEECHHHHHHHHHHHHHHHH
T ss_conf -998999999899999999--9988344499999999999999