HHsearch alignment for GI: 254780413 and conserved domain: TIGR01925
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.43 E-value=8.3e-07 Score=67.82 Aligned_cols=95 Identities=29% Similarity=0.434 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 999999999998888718---89787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r 702 RSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 (820)
Q Consensus 702 ~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL 778 (820)
T Consensus 38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~-~~~~~v~D~G~GI~--~lE~A~~PLyTskPeLER----SGMGF 110 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDD-EVSITVRDEGIGIE--NLEEAREPLYTSKPELER----SGMGF 110 (137)
T ss_pred HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECC-EEEEEEEECCCCHH--HHHHHCCCCCCCCCCCCC----CCCCE
T ss_conf 555433322321205314563799778999996054-89999864675723--378532664579987220----67860
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999999619869999788995399999
Q gi|254780413|r 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807 (820)
Q Consensus 779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~ 807 (820)
T Consensus 111 T----vME~FMD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 111 T----VMESFMDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred E----EECCCCCCEEEEECCCCCCEEEEE
T ss_conf 1----211124512686238998468875