HHsearch alignment for GI: 254780413 and conserved domain: TIGR01925

>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.43  E-value=8.3e-07  Score=67.82  Aligned_cols=95  Identities=29%  Similarity=0.434  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf             999999999998888718---89787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r  702 RSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL  778 (820)
Q Consensus       702 ~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL  778 (820)
T Consensus        38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~-~~~~~v~D~G~GI~--~lE~A~~PLyTskPeLER----SGMGF  110 (137)
T TIGR01925        38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDD-EVSITVRDEGIGIE--NLEEAREPLYTSKPELER----SGMGF  110 (137)
T ss_pred             HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECC-EEEEEEEECCCCHH--HHHHHCCCCCCCCCCCCC----CCCCE
T ss_conf             555433322321205314563799778999996054-89999864675723--378532664579987220----67860


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             99999999619869999788995399999
Q gi|254780413|r  779 PLAKAMVDANMGKFYIFSTPAKGTLIEII  807 (820)
Q Consensus       779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~  807 (820)
T Consensus       111 T----vME~FMD~~~v~S~~~~GT~I~~~  135 (137)
T TIGR01925       111 T----VMESFMDDVEVDSEKEKGTKIILK  135 (137)
T ss_pred             E----EECCCCCCEEEEECCCCCCEEEEE
T ss_conf             1----211124512686238998468875