HHsearch alignment for GI: 254780413 and conserved domain: TIGR02040

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=99.09  E-value=6.4e-09  Score=83.29  Aligned_cols=340  Identities=13%  Similarity=0.118  Sum_probs=201.0

Q ss_pred             EEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCC-----CCCCEEEEECCCCCCCEEEE
Q ss_conf             9997999099966789966289978974996888204016882389999986379-----61671688614798837999
Q gi|254780413|r   87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-----TWYGKTTLWPIEGTNLYVPI  161 (820)
Q Consensus        87 w~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~-----~~~~~~~~~~~~g~~~~~~v  161 (820)
T Consensus        10 L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es---~~k~~~~l~~a~~~g~~a~r~~~~~-~~~P~~~ElP~   85 (453)
T TIGR02040        10 LLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEES---KEKVEALLSEAKRTGVGAVRVELNR-FVLPSDLELPM   85 (453)
T ss_pred             EEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHH---HHHHHHHHHHCCCCCCCHHHHHHHH-HCCCCCCCCCE
T ss_conf             5551787077644288552414130245884444135778---9999999971468888577776654-11799972440


Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             98630015688736305566898522103779999----98632433445430143200233442101444553100110
Q gi|254780413|r  162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK  237 (820)
Q Consensus       162 ~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (820)
T Consensus        86 ~F~~~~L~~sdGk~~~vLa~G--rdLr~vA~lqq~lv~AQ~AmEr-----------------------------------  128 (453)
T TIGR02040        86 EFVLVRLGASDGKDEGVLALG--RDLRAVAELQQRLVEAQQAMER-----------------------------------  128 (453)
T ss_pred             EEEEECCCCCCCCCCCEEEEC--CCCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_conf             346761678788887358884--6524789999999999878888-----------------------------------


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             00133441013610122220002101520111000000024402333555421011012223321000110134565455
Q gi|254780413|r  238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE  317 (820)
Q Consensus       238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (820)
T Consensus       129 -------------------------------------------------------------------------DYW~lR~  135 (453)
T TIGR02040       129 -------------------------------------------------------------------------DYWKLRE  135 (453)
T ss_pred             -------------------------------------------------------------------------HHHHHHH
T ss_conf             -------------------------------------------------------------------------7999866


Q ss_pred             HHHHHHHHHHHCCCCEEEEE--CCEEEEECHHHHHHHCCCCH--HHHCCCCCCHHHHCC--CCCCHHHHHHHHHHHHHCC
Q ss_conf             56578999963499789970--99588720688988379844--772246761122024--5545135678999875058
Q gi|254780413|r  318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDR  391 (820)
Q Consensus       318 ~~~~~~~ild~lp~gv~i~~--~gri~~~N~a~~~l~G~~~~--e~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~g  391 (820)
T Consensus       136 ~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~-----~~~~e~~~~~~~~l~~~l~~~~atg  210 (453)
T TIGR02040       136 METRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGR-----EFPQELEEREREELELLLREVRATG  210 (453)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCC-----HHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             75444335411488679985365347786799999850267750123111-----3431466454368999998643015


Q ss_pred             CEEEEEEEEEE-----------EEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66559999999-----------9738944999999632433320023334456788889999999999999999999974
Q gi|254780413|r  392 TCIAASARLHT-----------IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA  460 (820)
Q Consensus       392 ~~~~~~~~~~~-----------i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~  460 (820)
T Consensus       211 ~A~~~~i~l~~~~~~~~v~~s~~r~~~~~~fL~~l~~~~~~~~~~~~--------------------~s~~sml~~l~~~  270 (453)
T TIGR02040       211 KAAEVRILLAESRKELLVVVSLFRQDSESLFLVRLSPAGASAAVGDV--------------------LSENSMLAKLVEE  270 (453)
T ss_pred             CCCCCEEEECCCCCCEEEEEEEEECCCCCHHHEEECCCCCCCCCCCC--------------------CCCHHHHHHHHHH
T ss_conf             77871787457887317887764023664101130311244677776--------------------6742789999974


Q ss_pred             HCCHHEEECCCCEEEEEHHHHHHHHCCC-HHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEE
Q ss_conf             2204307859983872156899884896-032078644334564562778999998860698402234888763897289
Q gi|254780413|r  461 TSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL  539 (820)
Q Consensus       461 ~~~gI~~~D~~G~i~~~N~a~~~l~G~~-~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (820)
T Consensus       271 ~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v~G~~L~~wL~R~~-vDL~Vll~nl~~~G~vrLyAt~L~~~~Ga~~~v  349 (453)
T TIGR02040       271 APDAIVVVDADGRIKRANEAFLELVEVSSKEAVRGRTLDRWLGRSG-VDLAVLLSNLRRTGQVRLYATTLKGELGAETEV  349 (453)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCC-HHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
T ss_conf             2987999778873288889999898717754531332355416775-338987762421685367631100243530368


Q ss_pred             EEEEEEEECCCCCEEEEEEEEHHHHHH
Q ss_conf             999998871788739999865144443
Q gi|254780413|r  540 SLRIIIKKLPFSSCYSLTMHDISEWKQ  566 (820)
Q Consensus       540 ~~~~~~~~~~~~~~~~~v~~Dite~k~  566 (820)
T Consensus       350 EISAa~~~~~~~P~lvl~iRdisRrl~  376 (453)
T TIGR02040       350 EISAAAVDQGERPKLVLVIRDISRRLT  376 (453)
T ss_pred             HHHHHHHCCCCCCEEEEEEECHHHHCC
T ss_conf             778787438998369998701234302