HHsearch alignment for GI: 254780413 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=99.09 E-value=6.4e-09 Score=83.29 Aligned_cols=340 Identities=13% Similarity=0.118 Sum_probs=201.0
Q ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCC-----CCCCEEEEECCCCCCCEEEE
Q ss_conf 9997999099966789966289978974996888204016882389999986379-----61671688614798837999
Q gi|254780413|r 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-----TWYGKTTLWPIEGTNLYVPI 161 (820)
Q Consensus 87 w~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~-----~~~~~~~~~~~~g~~~~~~v 161 (820)
T Consensus 10 L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es---~~k~~~~l~~a~~~g~~a~r~~~~~-~~~P~~~ElP~ 85 (453)
T TIGR02040 10 LLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEES---KEKVEALLSEAKRTGVGAVRVELNR-FVLPSDLELPM 85 (453)
T ss_pred EEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHH---HHHHHHHHHHCCCCCCCHHHHHHHH-HCCCCCCCCCE
T ss_conf 5551787077644288552414130245884444135778---9999999971468888577776654-11799972440
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 98630015688736305566898522103779999----98632433445430143200233442101444553100110
Q gi|254780413|r 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 (820)
Q Consensus 162 ~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (820)
T Consensus 86 ~F~~~~L~~sdGk~~~vLa~G--rdLr~vA~lqq~lv~AQ~AmEr----------------------------------- 128 (453)
T TIGR02040 86 EFVLVRLGASDGKDEGVLALG--RDLRAVAELQQRLVEAQQAMER----------------------------------- 128 (453)
T ss_pred EEEEECCCCCCCCCCCEEEEC--CCCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_conf 346761678788887358884--6524789999999999878888-----------------------------------
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 00133441013610122220002101520111000000024402333555421011012223321000110134565455
Q gi|254780413|r 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 (820)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (820)
T Consensus 129 -------------------------------------------------------------------------DYW~lR~ 135 (453)
T TIGR02040 129 -------------------------------------------------------------------------DYWKLRE 135 (453)
T ss_pred -------------------------------------------------------------------------HHHHHHH
T ss_conf -------------------------------------------------------------------------7999866
Q ss_pred HHHHHHHHHHHCCCCEEEEE--CCEEEEECHHHHHHHCCCCH--HHHCCCCCCHHHHCC--CCCCHHHHHHHHHHHHHCC
Q ss_conf 56578999963499789970--99588720688988379844--772246761122024--5545135678999875058
Q gi|254780413|r 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDR 391 (820)
Q Consensus 318 ~~~~~~~ild~lp~gv~i~~--~gri~~~N~a~~~l~G~~~~--e~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~g 391 (820)
T Consensus 136 ~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~-----~~~~e~~~~~~~~l~~~l~~~~atg 210 (453)
T TIGR02040 136 METRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGR-----EFPQELEEREREELELLLREVRATG 210 (453)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCC-----HHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 75444335411488679985365347786799999850267750123111-----3431466454368999998643015
Q ss_pred CEEEEEEEEEE-----------EEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66559999999-----------9738944999999632433320023334456788889999999999999999999974
Q gi|254780413|r 392 TCIAASARLHT-----------IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 (820)
Q Consensus 392 ~~~~~~~~~~~-----------i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~ 460 (820)
T Consensus 211 ~A~~~~i~l~~~~~~~~v~~s~~r~~~~~~fL~~l~~~~~~~~~~~~--------------------~s~~sml~~l~~~ 270 (453)
T TIGR02040 211 KAAEVRILLAESRKELLVVVSLFRQDSESLFLVRLSPAGASAAVGDV--------------------LSENSMLAKLVEE 270 (453)
T ss_pred CCCCCEEEECCCCCCEEEEEEEEECCCCCHHHEEECCCCCCCCCCCC--------------------CCCHHHHHHHHHH
T ss_conf 77871787457887317887764023664101130311244677776--------------------6742789999974
Q ss_pred HCCHHEEECCCCEEEEEHHHHHHHHCCC-HHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 2204307859983872156899884896-032078644334564562778999998860698402234888763897289
Q gi|254780413|r 461 TSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 (820)
Q Consensus 461 ~~~gI~~~D~~G~i~~~N~a~~~l~G~~-~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (820)
T Consensus 271 ~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v~G~~L~~wL~R~~-vDL~Vll~nl~~~G~vrLyAt~L~~~~Ga~~~v 349 (453)
T TIGR02040 271 APDAIVVVDADGRIKRANEAFLELVEVSSKEAVRGRTLDRWLGRSG-VDLAVLLSNLRRTGQVRLYATTLKGELGAETEV 349 (453)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCC-HHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
T ss_conf 2987999778873288889999898717754531332355416775-338987762421685367631100243530368
Q ss_pred EEEEEEEECCCCCEEEEEEEEHHHHHH
Q ss_conf 999998871788739999865144443
Q gi|254780413|r 540 SLRIIIKKLPFSSCYSLTMHDISEWKQ 566 (820)
Q Consensus 540 ~~~~~~~~~~~~~~~~~v~~Dite~k~ 566 (820)
T Consensus 350 EISAa~~~~~~~P~lvl~iRdisRrl~ 376 (453)
T TIGR02040 350 EISAAAVDQGERPKLVLVIRDISRRLT 376 (453)
T ss_pred HHHHHHHCCCCCCEEEEEEECHHHHCC
T ss_conf 778787438998369998701234302