Query gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 820
No_of_seqs 223 out of 23473
Neff 9.6
Searched_HMMs 39220
Date Sun May 29 19:50:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780413.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11091 aerobic respiration c 100.0 0 0 643.0 45.2 376 428-817 131-512 (779)
2 PRK10841 hybrid sensory kinase 100.0 0 0 613.5 41.9 348 442-816 347-696 (947)
3 PRK09959 hybrid sensory histid 100.0 0 0 582.2 41.8 371 433-812 557-938 (1197)
4 PRK13557 histidine kinase; Pro 100.0 0 0 577.3 44.9 350 449-814 25-396 (538)
5 TIGR02966 phoR_proteo phosphat 100.0 0 0 556.8 34.1 336 448-808 2-339 (339)
6 PRK11360 sensory histidine kin 100.0 0 0 541.6 43.5 346 445-814 254-603 (607)
7 PRK11006 phoR phosphate regulo 100.0 0 0 530.0 40.6 346 433-811 79-424 (431)
8 TIGR02956 TMAO_torS TMAO reduc 100.0 0 0 539.7 21.9 237 572-814 492-739 (1052)
9 PRK11107 hybrid sensory histid 100.0 0 0 525.3 31.3 241 569-814 277-522 (920)
10 PRK11466 hybrid sensory histid 100.0 0 0 516.2 31.1 238 570-817 429-669 (912)
11 PRK09303 adaptive-response sen 100.0 0 0 488.6 32.1 240 570-812 134-377 (378)
12 PRK11073 glnL nitrogen regulat 100.0 0 0 455.3 39.2 328 455-810 10-347 (348)
13 PRK13560 hypothetical protein; 100.0 0 0 413.8 56.9 675 83-813 80-806 (807)
14 PRK10364 sensor protein ZraS; 100.0 0 0 441.7 35.8 236 559-813 217-452 (455)
15 PRK10490 sensor protein KdpD; 100.0 0 0 437.4 38.2 231 578-815 657-887 (895)
16 PRK13837 two-component VirA-li 100.0 0 0 443.4 30.4 234 562-814 435-682 (831)
17 COG5002 VicK Signal transducti 100.0 0 0 426.7 29.8 356 434-814 92-452 (459)
18 PRK10549 signal transduction h 100.0 0 0 413.5 31.8 244 565-815 221-464 (467)
19 PRK11100 sensory histidine kin 100.0 0 0 408.0 31.6 238 565-811 237-474 (475)
20 PRK09835 sensor kinase CusS; P 100.0 0 0 405.6 31.7 243 563-812 240-482 (482)
21 PRK09470 cpxA two-component se 100.0 0 0 388.7 31.5 241 563-814 221-461 (461)
22 PRK10337 sensor protein QseC; 100.0 0 0 378.3 30.1 235 563-808 212-446 (446)
23 PRK10604 sensor protein RstB; 100.0 0 0 379.4 28.6 239 563-815 190-428 (433)
24 TIGR02938 nifL_nitrog nitrogen 100.0 0 0 383.2 25.7 465 320-810 4-496 (496)
25 COG2205 KdpD Osmosensitive K+ 100.0 0 0 370.6 32.2 228 580-813 655-882 (890)
26 PRK11086 sensory histidine kin 100.0 0 0 357.4 37.0 311 450-813 219-537 (541)
27 TIGR01386 cztS_silS_copS heavy 100.0 0 0 378.6 22.0 242 562-809 238-483 (483)
28 PRK10755 sensor protein BasS/P 100.0 0 0 364.7 29.8 232 563-809 121-354 (355)
29 PRK09467 envZ osmolarity senso 100.0 0 0 356.1 28.8 228 563-811 209-436 (437)
30 COG3852 NtrB Signal transducti 100.0 2.8E-45 0 350.0 32.9 336 455-815 10-359 (363)
31 PRK10815 sensor protein PhoQ; 100.0 2.8E-45 0 348.9 29.7 239 563-815 244-482 (484)
32 COG5000 NtrY Signal transducti 100.0 4.4E-43 0 333.4 35.6 339 442-810 360-708 (712)
33 COG4251 Bacteriophytochrome (l 100.0 4.2E-45 0 348.5 23.0 235 570-813 509-744 (750)
34 COG4191 Signal transduction hi 100.0 2E-43 0 335.9 27.0 240 559-811 356-602 (603)
35 PRK09776 putative sensor prote 100.0 3.1E-34 7.8E-39 268.7 35.2 363 82-573 314-686 (1116)
36 TIGR02916 PEP_his_kin putative 100.0 5.3E-35 1.3E-39 274.3 25.8 203 588-809 489-696 (696)
37 COG0642 BaeS Signal transducti 100.0 9.8E-34 2.5E-38 265.0 31.2 220 584-815 114-334 (336)
38 COG3290 CitA Signal transducti 100.0 1.6E-30 4E-35 241.5 32.3 315 449-813 212-534 (537)
39 COG4192 Signal transduction hi 100.0 7.3E-30 1.9E-34 236.6 22.9 246 559-815 423-671 (673)
40 smart00387 HATPase_c Histidine 100.0 2.7E-27 7E-32 217.8 15.2 111 699-811 1-111 (111)
41 pfam02518 HATPase_c Histidine 99.9 9.3E-27 2.4E-31 213.9 15.3 111 699-811 1-111 (111)
42 PRK13559 hypothetical protein; 99.9 3.2E-23 8E-28 188.0 32.6 303 450-812 43-363 (363)
43 PRK13560 hypothetical protein; 99.9 2.2E-24 5.6E-29 196.5 19.9 412 296-730 180-698 (807)
44 PRK10618 phosphotransfer inter 99.9 7E-21 1.8E-25 170.9 36.6 331 445-813 336-671 (881)
45 cd00075 HATPase_c Histidine ki 99.9 1.1E-24 2.7E-29 198.8 13.2 102 704-808 1-103 (103)
46 KOG0519 consensus 99.9 2.3E-25 5.8E-30 203.7 3.1 239 567-812 201-490 (786)
47 PRK11359 cAMP phosphodiesteras 99.9 2.3E-19 5.9E-24 159.7 22.2 236 73-320 11-259 (799)
48 PRK09776 putative sensor prote 99.9 1.8E-19 4.6E-24 160.6 21.3 266 307-580 291-562 (1116)
49 PRK10935 nitrate/nitrite senso 99.9 2.1E-18 5.3E-23 152.8 26.7 194 590-814 366-566 (568)
50 PRK10547 chemotaxis protein Ch 99.8 7E-17 1.8E-21 141.6 21.9 166 633-813 314-518 (662)
51 PRK11359 cAMP phosphodiesteras 99.8 8.9E-16 2.3E-20 133.5 24.1 240 316-569 8-256 (799)
52 COG0643 CheA Chemotaxis protei 99.7 3.9E-15 1E-19 128.8 21.1 169 628-811 364-574 (716)
53 PRK10600 nitrate/nitrite senso 99.7 6E-14 1.5E-18 120.1 27.1 193 590-814 363-560 (569)
54 PRK13557 histidine kinase; Pro 99.7 5.8E-16 1.5E-20 134.9 13.0 113 85-202 40-157 (538)
55 COG4585 Signal transduction hi 99.6 4.1E-13 1.1E-17 113.9 22.6 190 590-810 172-365 (365)
56 COG3920 Signal transduction hi 99.6 2E-12 5.1E-17 109.0 22.8 211 559-815 2-220 (221)
57 PRK11644 sensory histidine kin 99.6 5.3E-12 1.3E-16 105.9 24.2 186 591-810 306-496 (497)
58 COG2972 Predicted signal trans 99.6 2.3E-12 5.8E-17 108.5 20.3 183 590-812 264-454 (456)
59 COG3850 NarQ Signal transducti 99.6 8.1E-12 2.1E-16 104.5 22.9 189 590-810 374-568 (574)
60 PRK13559 hypothetical protein; 99.6 3.9E-13 9.8E-18 114.2 15.0 109 86-199 58-171 (363)
61 PRK03660 anti-sigma F factor; 99.5 3.2E-13 8.1E-18 114.8 11.8 103 700-813 36-141 (146)
62 PRK10060 RNase II stability mo 99.4 1.8E-11 4.5E-16 102.0 14.7 122 74-202 115-238 (663)
63 pfam00989 PAS PAS fold. The PA 99.4 7.2E-12 1.8E-16 104.9 10.6 109 452-561 1-112 (112)
64 pfam00512 HisKA His Kinase A ( 99.4 3.2E-12 8.1E-17 107.5 8.1 66 584-653 1-66 (66)
65 COG4564 Signal transduction hi 99.3 2.5E-08 6.5E-13 78.9 26.0 310 459-813 90-450 (459)
66 pfam08448 PAS_4 PAS fold. The 99.3 1.8E-11 4.6E-16 101.9 9.8 102 86-192 8-110 (110)
67 COG3275 LytS Putative regulato 99.3 2.4E-09 6.1E-14 86.4 20.6 160 629-814 386-555 (557)
68 pfam08448 PAS_4 PAS fold. The 99.3 4.4E-11 1.1E-15 99.1 9.6 106 458-566 1-110 (110)
69 pfam00989 PAS PAS fold. The PA 99.3 4.4E-11 1.1E-15 99.1 9.2 98 85-187 13-112 (112)
70 TIGR00229 sensory_box PAS doma 99.2 1.3E-10 3.2E-15 95.7 11.1 123 449-571 2-130 (130)
71 PRK13558 bacterio-opsin activa 99.2 2.9E-09 7.3E-14 85.8 15.1 111 87-202 175-287 (674)
72 KOG0787 consensus 99.2 2.9E-08 7.5E-13 78.4 20.2 196 617-815 167-385 (414)
73 COG3851 UhpB Signal transducti 99.2 1E-07 2.7E-12 74.4 22.7 186 587-809 305-493 (497)
74 smart00388 HisKA His Kinase A 99.1 2.2E-10 5.5E-15 94.0 8.5 65 585-653 2-66 (66)
75 PRK10060 RNase II stability mo 99.1 3.1E-09 8E-14 85.6 13.2 163 311-481 102-284 (663)
76 TIGR02040 PpsR-CrtJ transcript 99.1 6.4E-09 1.6E-13 83.3 13.9 340 87-566 10-376 (453)
77 cd00082 HisKA Histidine Kinase 99.1 4.4E-10 1.1E-14 91.8 7.1 64 583-649 2-65 (65)
78 PRK11091 aerobic respiration c 99.1 2.6E-09 6.7E-14 86.1 11.0 126 85-214 167-294 (779)
79 TIGR02938 nifL_nitrog nitrogen 99.0 2.7E-10 6.8E-15 93.4 4.9 299 77-524 9-329 (496)
80 PRK13558 bacterio-opsin activa 99.0 5E-09 1.3E-13 84.1 9.8 143 316-465 154-300 (674)
81 PRK11360 sensory histidine kin 98.8 4.5E-07 1.1E-11 69.8 14.0 128 317-456 258-387 (607)
82 PRK04069 serine-protein kinase 98.8 2.2E-07 5.6E-12 72.1 11.8 110 702-820 41-155 (158)
83 TIGR00229 sensory_box PAS doma 98.7 1.2E-07 3.1E-12 73.9 9.6 108 85-196 17-129 (130)
84 COG1389 DNA topoisomerase VI, 98.7 2.9E-07 7.3E-12 71.2 9.6 11 338-348 214-224 (538)
85 cd00130 PAS PAS domain; PAS mo 98.6 1.2E-06 3.2E-11 66.5 12.0 98 85-186 4-102 (103)
86 COG3829 RocR Transcriptional r 98.6 3E-06 7.6E-11 63.8 13.9 229 323-579 4-237 (560)
87 TIGR01052 top6b DNA topoisomer 98.6 1.3E-07 3.3E-12 73.7 6.0 56 702-757 27-92 (662)
88 PRK10820 DNA-binding transcrip 98.5 2.8E-06 7.1E-11 63.9 11.8 51 86-142 93-143 (513)
89 PRK04184 DNA topoisomerase VI 98.5 2.1E-06 5.3E-11 64.9 10.1 10 663-672 494-503 (533)
90 PRK11073 glnL nitrogen regulat 98.5 7.9E-06 2E-10 60.7 12.9 109 75-196 12-120 (348)
91 cd00130 PAS PAS domain; PAS mo 98.4 3.7E-06 9.3E-11 63.1 10.5 99 461-561 1-103 (103)
92 TIGR01925 spIIAB anti-sigma F 98.4 8.3E-07 2.1E-11 67.8 7.0 95 702-807 38-135 (137)
93 pfam08447 PAS_3 PAS fold. The 98.4 1.6E-06 4E-11 65.8 8.1 84 95-180 1-88 (90)
94 COG2202 AtoS FOG: PAS/PAC doma 98.3 0.00045 1.2E-08 47.8 20.7 138 428-567 89-231 (232)
95 smart00091 PAS PAS domain. PAS 98.3 1.4E-06 3.7E-11 66.1 5.2 64 453-516 2-65 (67)
96 KOG0519 consensus 98.2 3.5E-06 8.9E-11 63.3 6.4 226 567-795 368-619 (786)
97 PRK00095 mutL DNA mismatch rep 98.2 3.9E-06 1E-10 62.9 6.2 30 700-729 570-600 (612)
98 pfam10090 DUF2328 Uncharacteri 98.2 0.00079 2E-08 46.0 17.5 173 601-798 2-174 (181)
99 TIGR02040 PpsR-CrtJ transcript 98.1 0.00015 3.8E-09 51.3 12.1 113 442-557 128-244 (453)
100 COG2172 RsbW Anti-sigma regula 98.0 0.00014 3.5E-09 51.5 10.5 99 700-809 37-142 (146)
101 TIGR00585 mutl DNA mismatch re 97.8 9.6E-05 2.4E-09 52.7 6.6 58 703-764 22-79 (367)
102 smart00091 PAS PAS domain. PAS 97.7 3.4E-05 8.8E-10 56.0 4.1 43 85-127 13-55 (67)
103 pfam08447 PAS_3 PAS fold. The 97.7 0.0002 5.1E-09 50.4 7.1 79 474-553 1-81 (90)
104 PRK11006 phoR phosphate regulo 97.6 0.0015 3.9E-08 43.9 11.1 117 307-445 85-202 (431)
105 COG5385 Uncharacterized protei 97.6 0.0087 2.2E-07 38.4 18.4 194 588-809 18-213 (214)
106 COG0323 MutL DNA mismatch repa 97.5 0.00033 8.4E-09 48.8 5.9 32 637-676 553-584 (638)
107 KOG3558 consensus 97.4 0.00052 1.3E-08 47.3 6.4 52 470-521 282-333 (768)
108 PRK10820 DNA-binding transcrip 97.4 0.0068 1.7E-07 39.2 11.7 109 449-567 77-191 (513)
109 PRK11388 DNA-binding transcrip 97.3 0.016 4E-07 36.5 13.9 46 456-501 207-252 (639)
110 PTZ00272 heat shock protein 83 97.3 0.0023 6E-08 42.5 8.9 38 634-676 628-665 (701)
111 COG3283 TyrR Transcriptional r 97.3 0.002 5E-08 43.1 8.0 50 454-503 82-131 (511)
112 PRK11086 sensory histidine kin 97.2 0.014 3.7E-07 36.8 11.9 34 322-355 223-257 (541)
113 COG3829 RocR Transcriptional r 97.1 0.011 2.7E-07 37.7 10.3 145 87-362 15-160 (560)
114 PRK05218 heat shock protein 90 97.0 0.0016 4.2E-08 43.7 5.4 34 635-673 577-610 (612)
115 KOG0501 consensus 96.6 0.01 2.6E-07 37.9 7.2 99 92-194 39-140 (971)
116 COG2202 AtoS FOG: PAS/PAC doma 96.6 0.048 1.2E-06 32.9 10.5 41 320-360 112-153 (232)
117 COG0326 HtpG Molecular chapero 96.5 0.0053 1.3E-07 40.0 5.1 19 635-653 583-601 (623)
118 TIGR02966 phoR_proteo phosphat 96.5 0.035 8.9E-07 33.9 9.2 99 86-198 19-119 (339)
119 KOG1229 consensus 96.4 0.0016 4.2E-08 43.7 2.0 93 86-180 170-264 (775)
120 KOG3561 consensus 96.3 0.0057 1.5E-07 39.7 4.1 79 466-545 376-454 (803)
121 COG5002 VicK Signal transducti 96.2 0.1 2.5E-06 30.6 11.8 125 311-449 102-227 (459)
122 pfam08670 MEKHLA MEKHLA domain 96.2 0.088 2.2E-06 31.0 9.7 95 454-551 34-131 (148)
123 PTZ00130 heat shock protein 90 96.1 0.014 3.5E-07 37.0 5.3 30 86-126 135-164 (824)
124 COG3852 NtrB Signal transducti 95.9 0.079 2E-06 31.3 8.5 95 75-175 12-106 (363)
125 KOG0501 consensus 95.9 0.029 7.4E-07 34.6 6.1 13 482-494 527-539 (971)
126 COG3290 CitA Signal transducti 95.8 0.05 1.3E-06 32.8 7.0 36 322-357 217-253 (537)
127 KOG3558 consensus 95.7 0.038 9.8E-07 33.7 6.1 54 84-140 130-183 (768)
128 PRK09959 hybrid sensory histid 95.4 0.22 5.6E-06 28.1 10.4 48 307-354 563-611 (1197)
129 pfam08446 PAS_2 PAS fold. The 95.3 0.18 4.7E-06 28.7 8.5 58 81-141 13-71 (107)
130 COG5000 NtrY Signal transducti 94.8 0.31 7.8E-06 27.1 10.5 53 310-362 360-413 (712)
131 COG2461 Uncharacterized conser 94.6 0.22 5.6E-06 28.1 7.2 115 450-570 288-404 (409)
132 PRK11388 DNA-binding transcrip 94.3 0.39 1E-05 26.3 8.4 39 322-360 205-244 (639)
133 COG2461 Uncharacterized conser 94.3 0.068 1.7E-06 31.9 4.1 111 319-442 289-400 (409)
134 TIGR02373 photo_yellow photoac 94.2 0.029 7.5E-07 34.5 2.1 63 458-520 24-87 (126)
135 smart00086 PAC Motif C-termina 93.6 0.27 7E-06 27.4 6.2 40 146-189 3-42 (43)
136 KOG1979 consensus 93.5 0.13 3.4E-06 29.7 4.6 11 703-713 653-663 (694)
137 TIGR01924 rsbW_low_gc anti-sig 93.3 0.11 2.8E-06 30.4 3.8 80 704-786 44-127 (161)
138 KOG1229 consensus 93.2 0.33 8.5E-06 26.8 6.1 39 324-362 161-200 (775)
139 KOG3561 consensus 92.2 0.11 2.8E-06 30.3 2.5 45 84-128 106-150 (803)
140 KOG0020 consensus 91.6 0.42 1.1E-05 26.1 4.9 61 639-721 689-749 (785)
141 KOG3753 consensus 91.1 0.19 4.9E-06 28.5 2.8 173 469-650 338-536 (1114)
142 TIGR02373 photo_yellow photoac 90.8 0.087 2.2E-06 31.1 0.9 88 79-167 25-114 (126)
143 COG5381 Uncharacterized protei 90.8 0.79 2E-05 24.0 5.8 101 697-802 53-168 (184)
144 pfam07310 PAS_5 PAS domain. Th 90.6 1.1 2.9E-05 22.9 6.4 90 82-176 38-130 (137)
145 PRK05559 DNA topoisomerase IV 90.4 0.036 9.2E-07 33.9 -1.4 12 89-100 65-76 (633)
146 KOG3559 consensus 90.3 0.39 1E-05 26.3 3.8 46 84-129 90-135 (598)
147 KOG1978 consensus 90.1 0.39 1E-05 26.3 3.7 15 634-648 593-607 (672)
148 PTZ00108 DNA topoisomerase II; 89.6 0.5 1.3E-05 25.5 3.9 23 497-519 895-917 (1506)
149 KOG1977 consensus 89.4 0.74 1.9E-05 24.2 4.7 31 773-803 1067-1098(1142)
150 PTZ00109 DNA gyrase subunit b; 89.1 0.1 2.6E-06 30.6 0.0 21 75-95 242-262 (941)
151 PRK05644 gyrB DNA gyrase subun 88.9 0.057 1.4E-06 32.4 -1.4 13 453-465 472-484 (725)
152 KOG0019 consensus 87.1 0.96 2.5E-05 23.4 4.0 17 637-653 608-624 (656)
153 TIGR01058 parE_Gpos DNA topois 86.6 0.78 2E-05 24.1 3.3 23 131-155 51-73 (655)
154 smart00433 TOP2c Topoisomerase 86.0 0.1 2.6E-06 30.6 -1.5 12 89-100 29-40 (594)
155 TIGR01055 parE_Gneg DNA topois 84.1 1.4 3.4E-05 22.3 3.6 11 322-332 305-315 (647)
156 COG0187 GyrB Type IIA topoisom 81.9 0.14 3.5E-06 29.6 -2.2 31 403-433 259-291 (635)
157 TIGR02329 propionate_PrpR prop 80.5 1.3 3.2E-05 22.6 2.3 40 317-356 194-234 (658)
158 TIGR01059 gyrB DNA gyrase, B s 78.8 1.8 4.7E-05 21.4 2.7 145 450-617 478-638 (818)
159 KOG3560 consensus 77.5 4.3 0.00011 18.6 6.5 76 471-548 292-367 (712)
160 KOG0355 consensus 75.9 3.3 8.3E-05 19.5 3.3 23 736-758 754-776 (842)
161 TIGR01622 SF-CC1 splicing fact 75.4 4.1 0.00011 18.8 3.7 49 453-501 251-312 (531)
162 COG4631 XdhB Xanthine dehydrog 70.3 6.4 0.00016 17.4 4.8 109 659-796 575-690 (781)
163 TIGR02965 xanthine_xdhB xanthi 69.5 2.8 7.2E-05 20.0 1.7 22 485-506 591-612 (761)
164 PRK13719 conjugal transfer tra 61.2 9.3 0.00024 16.2 4.1 51 436-488 5-55 (220)
165 TIGR02153 gatD_arch glutamyl-t 60.5 4.9 0.00012 18.3 1.6 74 457-533 240-322 (413)
166 pfam00891 Methyltransf_2 O-met 59.5 9.2 0.00023 16.2 2.8 64 656-728 125-197 (239)
167 COG3887 Predicted signaling pr 58.2 10 0.00027 15.8 4.1 39 80-122 83-121 (655)
168 PRK07576 short chain dehydroge 57.5 11 0.00027 15.8 3.2 31 697-728 216-246 (260)
169 pfam11212 DUF2999 Protein of u 56.6 11 0.00028 15.7 3.7 54 597-657 27-81 (82)
170 TIGR01815 TrpE-clade3 anthrani 55.3 8.2 0.00021 16.6 2.0 61 741-809 572-636 (726)
171 pfam03281 Mab-21 Mab-21 protei 54.2 12 0.00031 15.4 4.4 10 636-645 300-309 (360)
172 pfam05127 DUF699 Putative ATPa 49.5 14 0.00036 14.9 3.0 43 738-780 77-120 (160)
173 PRK05786 fabG 3-ketoacyl-(acyl 49.3 14 0.00036 14.9 3.4 19 701-719 206-224 (238)
174 pfam07793 DUF1631 Protein of u 48.4 15 0.00037 14.8 3.3 61 614-677 524-596 (729)
175 PRK06841 short chain dehydroge 47.1 15 0.00039 14.6 3.3 21 699-719 221-241 (255)
176 PRK07062 short chain dehydroge 44.2 17 0.00043 14.3 3.3 22 698-719 229-250 (265)
177 KOG0859 consensus 43.7 10 0.00025 16.0 0.9 22 552-573 61-82 (217)
178 PRK08217 fabG 3-ketoacyl-(acyl 43.5 17 0.00044 14.2 3.4 15 700-714 223-237 (253)
179 TIGR01818 ntrC nitrogen regula 43.0 18 0.00045 14.2 3.9 15 588-602 322-336 (471)
180 PRK07041 short chain dehydroge 42.9 18 0.00045 14.2 3.3 15 699-713 208-222 (240)
181 PRK08277 D-mannonate oxidoredu 42.7 18 0.00045 14.2 3.3 21 699-719 240-261 (278)
182 TIGR02502 type_III_YscX type I 42.2 14 0.00035 15.0 1.4 16 477-492 8-23 (126)
183 PRK08085 gluconate 5-dehydroge 41.6 18 0.00047 14.0 3.3 21 699-719 219-239 (254)
184 PRK05717 oxidoreductase; Valid 41.2 16 0.00041 14.5 1.7 22 698-719 215-236 (255)
185 PRK06124 gluconate 5-dehydroge 41.1 19 0.00047 14.0 3.3 22 698-719 223-244 (259)
186 PRK11564 stationary phase indu 41.0 19 0.00048 14.0 6.9 20 663-682 255-274 (426)
187 PRK07774 short chain dehydroge 41.0 19 0.00048 14.0 2.9 22 698-719 214-235 (250)
188 PRK06935 2-deoxy-D-gluconate 3 40.6 19 0.00048 13.9 3.1 21 699-719 224-244 (258)
189 PRK07814 short chain dehydroge 39.6 20 0.0005 13.8 3.3 30 697-727 218-247 (263)
190 PRK07097 gluconate 5-dehydroge 39.5 20 0.0005 13.8 3.3 21 699-719 226-246 (265)
191 PRK08936 glucose-1-dehydrogena 39.1 20 0.00051 13.8 2.9 21 699-719 219-239 (261)
192 PRK12936 3-ketoacyl-(acyl-carr 38.8 20 0.00051 13.7 3.2 22 698-719 210-231 (245)
193 PRK07523 gluconate 5-dehydroge 38.7 20 0.00051 13.7 3.2 21 699-719 216-236 (251)
194 KOG4013 consensus 38.5 20 0.00052 13.7 2.2 25 328-352 57-84 (255)
195 PRK08213 gluconate 5-dehydroge 38.1 21 0.00053 13.7 3.3 22 698-719 224-245 (259)
196 PRK06114 short chain dehydroge 37.2 21 0.00054 13.6 3.2 22 698-719 227-248 (262)
197 pfam11171 DUF2958 Protein of u 37.1 21 0.00054 13.6 4.0 33 718-750 32-65 (112)
198 PRK12481 2-deoxy-D-gluconate 3 36.3 21 0.00054 13.6 1.7 21 699-719 217-237 (251)
199 PRK07831 short chain dehydroge 36.1 22 0.00056 13.5 3.1 30 697-727 227-256 (261)
200 PRK06701 short chain dehydroge 35.7 22 0.00057 13.4 2.8 21 699-719 254-274 (289)
201 PRK06500 short chain dehydroge 35.7 22 0.00057 13.4 3.4 21 699-719 215-235 (249)
202 PRK08589 short chain dehydroge 35.6 21 0.00053 13.7 1.5 21 699-719 221-241 (272)
203 PRK06550 fabG 3-ketoacyl-(acyl 35.6 21 0.00054 13.6 1.6 13 703-715 207-219 (237)
204 PRK06947 glucose-1-dehydrogena 35.3 23 0.00058 13.4 2.9 22 698-719 220-241 (252)
205 cd03015 PRX_Typ2cys Peroxiredo 35.3 23 0.00058 13.4 2.1 14 527-540 121-134 (173)
206 PRK09242 tropinone reductase; 35.3 23 0.00058 13.4 3.3 22 698-719 221-242 (258)
207 PRK09186 flagellin modificatio 35.0 23 0.00058 13.4 1.7 27 700-727 223-249 (255)
208 PRK06125 short chain dehydroge 34.8 23 0.00059 13.3 3.3 22 698-719 221-242 (259)
209 PRK07063 short chain dehydroge 34.8 23 0.00059 13.3 3.4 22 698-719 221-242 (259)
210 PRK05867 short chain dehydroge 34.6 23 0.00059 13.3 3.3 22 698-719 218-239 (253)
211 PRK12828 short chain dehydroge 34.3 23 0.0006 13.3 3.2 20 700-719 206-225 (239)
212 PRK12826 3-ketoacyl-(acyl-carr 34.2 24 0.0006 13.2 3.3 22 698-719 217-238 (253)
213 PRK04447 hypothetical protein; 33.9 24 0.00061 13.2 2.3 11 695-705 239-249 (357)
214 PRK12829 short chain dehydroge 33.2 24 0.00062 13.1 3.3 21 699-719 230-250 (264)
215 PRK08265 short chain dehydroge 33.1 25 0.00062 13.1 3.3 22 698-719 212-233 (261)
216 PRK12823 benD 1,6-dihydroxycyc 33.0 25 0.00063 13.1 3.2 16 703-718 231-246 (260)
217 TIGR02789 nickel_nikB nickel A 32.5 25 0.00064 13.1 1.8 10 325-334 114-123 (315)
218 TIGR01029 rpsG_bact ribosomal 32.5 25 0.00064 13.0 3.2 47 117-164 44-91 (159)
219 PRK06463 fabG 3-ketoacyl-(acyl 32.2 25 0.00065 13.0 2.9 21 699-719 215-235 (254)
220 pfam12282 H_kinase_N Signal tr 32.0 25 0.00065 13.0 6.4 81 85-178 39-120 (150)
221 PRK06138 short chain dehydroge 31.7 26 0.00066 13.0 3.2 21 699-719 218-238 (252)
222 PRK07856 short chain dehydroge 31.7 26 0.00066 13.0 3.3 18 701-718 211-228 (254)
223 TIGR02915 PEP_resp_reg putativ 31.2 26 0.00067 12.9 4.0 25 470-494 192-223 (451)
224 PRK06057 short chain dehydroge 30.9 26 0.00067 12.9 3.3 21 699-719 216-236 (255)
225 PRK08278 short chain dehydroge 30.8 27 0.00068 12.9 3.2 11 708-718 226-236 (273)
226 TIGR02423 protocat_alph protoc 30.7 19 0.00048 13.9 0.7 14 86-99 63-76 (203)
227 PRK08628 short chain dehydroge 30.4 27 0.00069 12.8 3.1 22 698-719 218-239 (258)
228 PRK07478 short chain dehydroge 30.1 27 0.00069 12.8 3.4 22 698-719 217-238 (254)
229 pfam07536 HWE_HK HWE histidine 30.1 27 0.0007 12.8 6.1 78 592-686 2-79 (83)
230 PRK06227 consensus 30.0 27 0.0007 12.8 3.3 21 699-719 217-237 (256)
231 PRK07231 fabG 3-ketoacyl-(acyl 29.6 28 0.00071 12.7 3.3 21 699-719 217-237 (250)
232 TIGR01137 cysta_beta cystathio 29.6 25 0.00063 13.1 1.1 34 642-677 455-488 (527)
233 PRK08642 fabG 3-ketoacyl-(acyl 29.0 28 0.00072 12.6 2.8 21 699-719 220-240 (254)
234 PRK06171 sorbitol-6-phosphate 28.9 29 0.00073 12.6 2.9 19 700-718 233-251 (266)
235 PRK05565 fabG 3-ketoacyl-(acyl 28.9 29 0.00073 12.6 3.2 19 700-718 215-233 (247)
236 PRK12748 3-ketoacyl-(acyl-carr 28.8 29 0.00073 12.6 1.8 22 698-719 222-243 (257)
237 PRK08339 short chain dehydroge 28.6 29 0.00074 12.6 3.1 22 698-719 226-247 (263)
238 TIGR02749 prenyl_cyano solanes 28.5 17 0.00043 14.3 0.1 25 314-338 67-91 (325)
239 TIGR01121 D_amino_aminoT D-ami 28.3 29 0.00073 12.6 1.2 15 273-287 136-150 (278)
240 PRK12742 oxidoreductase; Provi 27.6 30 0.00076 12.5 2.9 16 703-718 208-223 (237)
241 PRK06523 short chain dehydroge 27.6 30 0.00077 12.5 2.4 21 699-719 225-245 (260)
242 pfam02406 MmoB_DmpM MmoB/DmpM 27.4 30 0.00077 12.4 3.0 22 86-107 36-57 (87)
243 pfam08066 PMC2NT PMC2NT (NUC01 27.2 30 0.00078 12.4 6.8 54 625-679 25-78 (91)
244 PRK12935 acetoacetyl-CoA reduc 27.2 30 0.00078 12.4 2.8 14 701-714 217-230 (247)
245 PRK06346 consensus 27.2 30 0.00078 12.4 3.3 23 697-719 216-238 (251)
246 pfam06366 FlhE Flagellar prote 27.1 31 0.00078 12.4 2.6 17 78-94 98-114 (131)
247 PRK12939 short chain dehydroge 27.0 31 0.00078 12.4 3.3 22 698-719 215-236 (250)
248 PRK08226 short chain dehydroge 27.0 31 0.00078 12.4 3.2 21 699-719 222-242 (263)
249 PRK07479 consensus 26.9 31 0.00079 12.4 3.4 22 698-719 218-239 (252)
250 TIGR01605 PYST-D Plasmodium yo 26.3 31 0.0008 12.3 1.4 11 775-785 13-23 (55)
251 PRK12827 short chain dehydroge 25.8 32 0.00082 12.3 2.8 30 697-727 217-246 (251)
252 pfam03671 Ufm1 Ubiquitin fold 25.6 31 0.0008 12.3 1.1 18 741-758 49-67 (76)
253 COG4152 ABC-type uncharacteriz 25.3 33 0.00084 12.2 1.8 90 575-689 128-231 (300)
254 PRK07791 short chain dehydroge 24.7 34 0.00086 12.1 2.9 20 700-719 226-245 (285)
255 PRK13918 CRP/FNR family transc 24.7 9.6 0.00024 16.1 -1.7 54 651-708 138-194 (201)
256 PRK12893 allantoate amidohydro 24.6 34 0.00086 12.1 5.6 51 664-719 296-346 (408)
257 COG5388 Uncharacterized protei 24.6 34 0.00086 12.1 6.1 40 84-126 60-101 (209)
258 pfam00949 Peptidase_S7 Peptida 24.6 34 0.00086 12.1 2.0 23 164-186 115-137 (150)
259 PRK06398 aldose dehydrogenase; 24.6 34 0.00086 12.1 3.3 21 699-719 214-234 (256)
260 PRK05875 short chain dehydroge 24.5 34 0.00086 12.1 3.2 22 698-719 220-241 (277)
261 PRK02625 DNA-directed RNA poly 24.4 31 0.0008 12.3 0.9 41 702-743 484-525 (627)
262 PRK07792 fabG 3-ketoacyl-(acyl 24.3 34 0.00087 12.1 2.9 61 700-764 221-287 (303)
263 pfam11505 DUF3216 Protein of u 24.2 34 0.00088 12.0 4.3 38 601-638 43-80 (96)
264 PRK08416 7-alpha-hydroxysteroi 24.2 34 0.00088 12.0 2.7 21 699-719 226-246 (260)
265 PRK08063 enoyl-(acyl carrier p 23.8 35 0.00089 12.0 1.6 21 699-719 215-235 (250)
266 PRK08993 2-deoxy-D-gluconate 3 23.7 35 0.00089 12.0 1.7 22 698-719 218-239 (253)
267 TIGR01973 NuoG NADH-quinone ox 23.6 28 0.00073 12.6 0.5 34 106-139 15-48 (715)
268 PRK05993 short chain dehydroge 23.6 35 0.0009 12.0 1.6 10 470-479 126-135 (277)
269 PRK12428 3-alpha-hydroxysteroi 23.3 36 0.00091 11.9 3.3 30 697-727 217-246 (261)
270 PRK12747 short chain dehydroge 22.9 36 0.00092 11.9 1.6 22 698-719 218-239 (252)
271 PRK06949 short chain dehydroge 22.3 37 0.00095 11.8 3.3 18 701-718 228-245 (258)
272 pfam07568 HisKA_2 Histidine ki 22.1 38 0.00096 11.8 8.9 73 592-677 2-74 (76)
273 pfam07057 TraI DNA helicase Tr 21.7 38 0.00097 11.7 1.3 14 165-178 95-108 (126)
274 TIGR02748 GerC3_HepT heptapren 21.5 25 0.00063 13.1 -0.1 18 447-464 175-192 (325)
275 PRK06300 enoyl-(acyl carrier p 21.4 39 0.00098 11.7 3.1 22 698-719 253-274 (298)
276 KOG1135 consensus 21.3 39 0.00099 11.7 1.9 48 696-749 695-743 (764)
277 cd01766 Ufm1 Ufm1 (ubiquitin-f 21.1 39 0.001 11.6 1.0 17 741-757 49-66 (82)
278 TIGR00519 asnASE_I L-asparagin 20.9 40 0.001 11.6 1.5 14 454-467 265-278 (347)
279 TIGR01307 pgm_bpd_ind 2,3-bisp 20.7 26 0.00066 12.9 -0.2 36 666-701 428-463 (529)
280 PRK06279 putative monovalent c 20.6 40 0.001 11.6 2.6 61 691-760 35-95 (101)
281 PRK07890 short chain dehydroge 20.6 40 0.001 11.5 3.3 18 701-718 226-243 (258)
282 PRK06172 short chain dehydroge 20.5 40 0.001 11.5 3.3 19 700-718 220-238 (253)
283 TIGR02386 rpoC_TIGR DNA-direct 20.5 40 0.001 11.5 1.6 20 703-722 817-836 (1552)
284 pfam01730 UreF UreF. This fami 20.4 41 0.001 11.5 2.6 23 701-723 115-137 (150)
No 1
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=0 Score=642.99 Aligned_cols=376 Identities=21% Similarity=0.312 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHH
Q ss_conf 33445678888999999999999999999997422043078599838721568998848960320786443345645627
Q gi|254780413|r 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 (820)
Q Consensus 428 ~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~ 507 (820)
..+.....++.+|+.++.+|.++...||+++|++||.|++-|++|++.-||++|+.++|++.++++|+...+++.++-..
T Consensus 131 ~~~~~l~~e~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G~~e~eliG~t~~d~~~~e~a~ 210 (779)
T PRK11091 131 EAFEDLKNEIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLVGLTPKDVYSPEAAE 210 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHHCCHHHHH
T ss_conf 99999999999989999999998899998850287515787798765341099998809998998499835527998899
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCC----EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789999988606984022348887638972899999988717887----3999986514444345765446688789999
Q gi|254780413|r 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 (820)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~Dite~k~~e~el~~~~~~~e~~~~ 583 (820)
.....-+.+...+.+...+..... ++|+..++.+.-.+..+.. |++++.||||+||++|+ ++|.||+
T Consensus 211 ~~~~~D~~v~~~~~~~~~e~w~~~--~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aee-------aLE~Asr 281 (779)
T PRK11091 211 KVIETDEKVFRHNVSLTYEQWLDY--PDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQD-------ALEKASR 281 (779)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEC--CCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH-------HHHHHHH
T ss_conf 999738999864798211134664--8986678998640135389978878630016017789999-------9999999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 99999985234531748999999999973126877888999999999998999999999999986643188520003317
Q gi|254780413|r 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 (820)
Q Consensus 584 ~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vd 663 (820)
+|++|||+||||||||||+|+||+++|.+..+ ++++++|++.|..|+++|+.||||+|||||||+|++++..+++|
T Consensus 282 aKS~FLAnMSHEIRTPLNgIlG~seLL~~t~L----~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEaGkl~l~~~~fd 357 (779)
T PRK11091 282 DKTTFISTISHELRTPLNGIVGLSRMLLDTEL----TAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDRRKLQLDNQPVD 357 (779)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 99999987268756539999999999807999----99999999999999999999999999999996699678877675
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 99999999999999987378089997379884-68988899999999999888871889787999999804994999999
Q gi|254780413|r 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 (820)
Q Consensus 664 l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~ 742 (820)
+.+++++++.++++.+..|++.+.+.+++.+| .|.+|+.||+||+.|||+||||||+.|+ |++++...++..++|+|+
T Consensus 358 l~~ll~~v~~~~~~~A~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsNAIKFT~~G~-V~l~v~~~~~~~l~f~V~ 436 (779)
T PRK11091 358 FTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYEDGDMLHFEVE 436 (779)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCEEEEEEE
T ss_conf 9999999999999999974988999978999862863899999999999999977389997-799999827988999999
Q ss_pred ECCCCCCHHHHHHHCCCCEEECCCC-CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCC
Q ss_conf 7889789888664237718734787-66678886068999999996198699997889953999996357778886
Q gi|254780413|r 743 DTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 (820)
Q Consensus 743 DtG~GI~~~~~~~iFepF~~~~~~~-~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~p~ 817 (820)
|||||||++++++||+||+|++.+. ++.++||||||+|||+||++|||+|+|+|+||+||||+++||+.....+.
T Consensus 437 DTGiGI~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl~~~~~~~ 512 (779)
T PRK11091 437 DSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHAPAVAEEV 512 (779)
T ss_pred ECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCC
T ss_conf 5799999999998705756066787776778876079999999998499799995599871799999766556677
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=0 Score=613.50 Aligned_cols=348 Identities=26% Similarity=0.384 Sum_probs=308.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHEEECC-CCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999742204307859-98387215689988489603207864433456456277899999886069
Q gi|254780413|r 442 INKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 (820)
Q Consensus 442 ~~~~~L~~~~~~L~~ile~~~~gI~~~D~-~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (820)
....+|+++++.-+.++.++|.||.++.. +|..+..|.-+...+. ...++++......+ ...
T Consensus 347 ~~a~~l~e~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~~-------------~~~~~~~~~~~~~~----~~~ 409 (947)
T PRK10841 347 SNALRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYLN-------------MLTHEDRQRLTQII----CGQ 409 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHHH-------------HCCCCHHHHHHHHH----HCC
T ss_conf 7788998788877889861771379997068863310389999876-------------23755289999998----613
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 84022348887638972899999988717887399998651444434576544668878999999999985234531748
Q gi|254780413|r 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 (820)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL 600 (820)
.....+ + ...+++.+.++....+..+..-.++++.|||.||++|++|.+++++||+||++||+|||+|||||||||
T Consensus 410 ~~~~~~--~--~~~~~~~l~~~~~~~ry~~~~v~~c~~~Disar~~~e~~L~~a~~AAE~AN~AKS~FLAnMSHEIRTPL 485 (947)
T PRK10841 410 QVNFVD--V--LTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPL 485 (947)
T ss_pred CCCCEE--E--EECCCCEEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHH
T ss_conf 788348--9--935985799998653126860799999854078999999999999999999999899875856436128
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997312687788899999999999899999999999998664318852000331799999999999999987
Q gi|254780413|r 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 (820)
Q Consensus 601 ~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~ 680 (820)
|+|+|++|+|.+..+ ++.+++|++.|..|++.|++||||+|||||||+||++++..+|++.+++++++.++.+.+.
T Consensus 486 nGIlG~lELL~~t~L----~~~Qr~~l~tI~~Ss~~LL~lINDILDfSKIEAGkl~Le~~~F~l~~lv~~v~~~~~~~A~ 561 (947)
T PRK10841 486 YGIIGNLDLLQTKEL----PKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVV 561 (947)
T ss_pred HHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999807999----9899999999999999999999999999988049847985256899999999999999999
Q ss_pred HCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf 378089997379884-6898889999999999988887188978799999980499499999978897898886642377
Q gi|254780413|r 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 (820)
Q Consensus 681 ~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFep 759 (820)
+|++.+.+.+++++| .|.||+.||+||+.|||+||||||+.|+ |+|++..+ ++.++|+|+||||||+++++++||+|
T Consensus 562 ~K~L~L~~~idp~vP~~v~GDp~RLrQIL~NLLsNAIKFT~~G~-I~L~V~~~-~~~L~fsV~DTGIGIsee~~~~LFep 639 (947)
T PRK10841 562 KKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDTGC-IILHVRVD-GDYLSFRVRDTGVGIPAKEVVRLFDP 639 (947)
T ss_pred HCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHEEECCCCE-EEEEEEEC-CCEEEEEEEECCCCCCHHHHHHHHCH
T ss_conf 73987999979999965860688999999998877746679958-99999984-99999999982899899999988471
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 187347876667888606899999999619869999788995399999635777888
Q gi|254780413|r 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 (820)
Q Consensus 760 F~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~p 816 (820)
|+|++.+.+|+++||||||+|||+||++|||+|+|+|+||+||+|+|+||+.....|
T Consensus 640 F~QaD~S~tR~yGGTGLGLAI~krLVeLMGG~I~VeSe~G~GStFtf~LPL~~~~~~ 696 (947)
T PRK10841 640 FFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTVRIPLYGAQYP 696 (947)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCCC
T ss_conf 115787543457998741999999999759958999169980799999756433456
No 3
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=0 Score=582.18 Aligned_cols=371 Identities=22% Similarity=0.301 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCC--CHHHHH
Q ss_conf 678888999999999999999999997422043078599838721568998848960320786443345645--627789
Q gi|254780413|r 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMN 510 (820)
Q Consensus 433 ~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~--~~~~~~ 510 (820)
....+..|+.++++|+.+....++++|++|.+|++.|.+|+++.||.+++..|+.+.......++...-.+. ......
T Consensus 557 L~r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1197)
T PRK09959 557 LLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTH 636 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999998899999998369987699825561224118889875231444213565322221567777778
Q ss_pred HHHHHHHCCCCCCEEEEEEE-EECCCCCEEEEEEEEEE--CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998860698402234888-76389728999999887--1788739999865144443457654466887899999999
Q gi|254780413|r 511 HYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 (820)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~ 587 (820)
+......... ..+..... ......+.+.....+.. .....++++...|||++|+.|++|.+++++||.||++|++
T Consensus 637 ~~~~~~~~~~--~~~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~AKS~ 714 (1197)
T PRK09959 637 EVTAETKENR--TIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVAKSQ 714 (1197)
T ss_pred HHHHHHHHCC--CCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987531012--10001453057754236775310003764444010115464128999999999999999999888888
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 998523453174899999999997312687788899-9999999998999999999999986643188520003317999
Q gi|254780413|r 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 588 fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
|||+||||||||||+|+|++++|.+... ++++ .++++.|..|+++|+.||||+|||||||+|+++++++++|+.+
T Consensus 715 FLA~MSHEIRTPLn~IiG~~eLL~~~~l----~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l~~ 790 (1197)
T PRK09959 715 FLATMSHEIRTPISSIMGFLELLSGSGL----SKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPT 790 (1197)
T ss_pred HHHHCCHHHCCHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf 8874735316568999999999846899----989999999999999999999888889998985388621452017999
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCC--CEEEEEE
Q ss_conf 99999999999987378089997379884-689888999999999998888718897879999998--049--9499999
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSN--EEVILRV 741 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~--~~~--~~v~i~V 741 (820)
++++++.++++.|..|++.+.++.....+ .|.+|+.||+||+.|||+||||||+.|+ |.|++.. .++ ..+.|+|
T Consensus 791 li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~-V~i~~~~~~~~~~~~~l~~~V 869 (1197)
T PRK09959 791 LVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKMTI 869 (1197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEEECCCCEEEEEEEE
T ss_conf 9999999999999967968999558987513526788999999999875374687978-999999865179806999999
Q ss_pred EECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 97889789888664237718734787666788860689999999961986999978899539999963577
Q gi|254780413|r 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 (820)
Q Consensus 742 ~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~ 812 (820)
+||||||+++.+++||+||.|++ .+++++||||||+|||+||++|||+|+|+|+||+||+|+|+||+.-
T Consensus 870 ~DTGiGI~~~~~~~iF~pF~Q~s--~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~~ 938 (1197)
T PRK09959 870 MDSGSGLSQEEQQQLFKRYSQTS--AGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI 938 (1197)
T ss_pred EECCCCCCHHHHHHHCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 97787889889975367862477--8878898483599999999987992899935999449999997564
No 4
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=0 Score=577.32 Aligned_cols=350 Identities=20% Similarity=0.300 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHHHCCHHEEEC---CCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999999999974220430785---99838721568998848960320786443345645627789999988606984022
Q gi|254780413|r 449 IEVMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 (820)
Q Consensus 449 ~~~~~L~~ile~~~~gI~~~D---~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (820)
+..+.|.+++++++++|++.| +||+|+|||++|++++||+++|++|+++..+.+|+..+.....++.....+. .+
T Consensus 25 ~~~~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~~~~L~~p~~~~~~~~~~~~~i~~~~--~~ 102 (538)
T PRK13557 25 HRSDIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVADVRDAIAERR--EI 102 (538)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCC--CE
T ss_conf 8899999999607973899358999987999839999987959999869998770898899999999999997599--36
Q ss_pred EEEEEEECCCCCEEEEEEEEEECCCCC----EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 348887638972899999988717887----3999986514444345765446688789999999999852345317489
Q gi|254780413|r 526 EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 (820)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~ 601 (820)
..+++.+.++|..+|+..++.++.+.. +++++.+|||++|++|++|++++++ .++++|+++||||||||||
T Consensus 103 ~~E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qaqkl-----ealg~~~a~isHEirnPL~ 177 (538)
T PRK13557 103 ATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQAQKM-----EALGQLTGGIAHDFNNLLQ 177 (538)
T ss_pred EEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCHHH
T ss_conf 87999987999999999899999989999999999883444999999999999999-----9999999887887626999
Q ss_pred HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999973126877-88899999999999899999999999998664318852000331799999999999999987
Q gi|254780413|r 602 AIIGFSEVIKNQRFGPL-GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 (820)
Q Consensus 602 ~I~g~~~~l~~~~~~~~-~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~ 680 (820)
+|+||+++|......+. ..++.+++++.|..+++|+..||++||+||| +..++.++++|++++.++..+++ ++.
T Consensus 178 ~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr----~~~l~~~~~~l~~lv~~~~~l~~-~~~ 252 (538)
T PRK13557 178 VMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFAR----KQKLDGRVVNLNGLVSGMGEMAE-RTL 252 (538)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCEEECHHHHHHHHHHHHH-HHH
T ss_conf 9999999998640168889999999999999999999999999999758----27687717729999999999999-985
Q ss_pred HCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC--------------CCCEEEEEEEECCC
Q ss_conf 3780899973798846898889999999999988887188978799999980--------------49949999997889
Q gi|254780413|r 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGV 746 (820)
Q Consensus 681 ~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~--------------~~~~v~i~V~DtG~ 746 (820)
.+++.+..++++.+|.+.+|+.+|+|||+|||+||+||++.||.|.|++... .+.+++|+|+|||+
T Consensus 253 ~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~~~~~~~~~~~g~~v~i~V~DtG~ 332 (538)
T PRK13557 253 GDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEHDLAMYHQLPPGRYVSIAVTDTGS 332 (538)
T ss_pred CCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 29919999807988708755899999999989879986578975999998764154210012457888789999998689
Q ss_pred CCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 78988866423771873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 747 GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
||+++.+++||+||||++. .++||||||+|||+||++|||+|+|+|+||+||||+|+||+....
T Consensus 333 GI~~e~~~rIFepFfttk~----~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v~lP~~~~~ 396 (538)
T PRK13557 333 GMPPEILARVMEPFFTTKE----EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASEQA 396 (538)
T ss_pred CCCHHHHHHHHCCCEEECC----CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 8898999977250104224----578777249999999998799599993289877999998678766
No 5
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=100.00 E-value=0 Score=556.76 Aligned_cols=336 Identities=24% Similarity=0.349 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCEEE
Q ss_conf 99999999999742204307859983872156899884896032078644334564562778999998860-69840223
Q gi|254780413|r 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLE 526 (820)
Q Consensus 448 ~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 526 (820)
.+...+|+...+++||+|+++|.+|.|..||++|+++||+...+-.|+++..++. .+...+|+..... ..... +
T Consensus 2 ~~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~p~D~Gq~i~~l~R---~P~F~~yl~~~~~t~~p~~-L- 76 (339)
T TIGR02966 2 SALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRWPDDLGQRITNLIR---HPEFVEYLAAGRFTSEPEQ-L- 76 (339)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCCCHHHCCCHHHHCC---CHHHHHHHHCCCCCCCCCC-E-
T ss_conf 4688999999975898299972898378621488986274273450770212105---7679999733555578853-1-
Q ss_pred EEEE-EECCCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 4888-763897289999998871788739999865144443457654466887899999999998523453174899999
Q gi|254780413|r 527 KITL-GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 (820)
Q Consensus 527 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g 605 (820)
+.. ........+. ..+.++.+ ..++.++||||+.++.| +.+.+|+||||||||||||.|.|
T Consensus 77 -~~~~~p~~~~~~l~--~r~~PY~~-~~~Ll~~RDvT~l~rLe--------------~mRrDFVANVSHELRTPLTVl~G 138 (339)
T TIGR02966 77 -ELPDSPINEERVLE--IRIMPYGE-EQKLLVARDVTRLRRLE--------------QMRRDFVANVSHELRTPLTVLRG 138 (339)
T ss_pred -EECCCCCCCCCEEE--EEEEEECC-CCEEEEEECHHHHHHHH--------------HHHHHHCCCCCCCCCCCHHHHHH
T ss_conf -10468888664799--99997569-83799987636899998--------------65343114452111454035568
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 99999731268778889999999999989999999999999866431885200033179999999999999998737808
Q gi|254780413|r 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 (820)
Q Consensus 606 ~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~ 685 (820)
|+|+|.+... ...++.+..|++.|.++++||.+||+|||.+||||+.......++||+..+|....+..+.....+++.
T Consensus 139 yLEtl~~~~~-~~~~~~~~~~l~~M~~Q~~RM~~LV~dLL~LSrlE~~~~~~~~~~V~~~~ll~~l~~~A~~ls~~~~h~ 217 (339)
T TIGR02966 139 YLETLEDGPV-DEDPEEWNRALELMQEQSQRMQSLVEDLLTLSRLESAANPPEDEPVDVPALLDHLRDEAEALSQGKQHQ 217 (339)
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 9997552367-788088999999999999999999999988876415788845565687999999999999997118838
Q ss_pred EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECC
Q ss_conf 99973798846898889999999999988887188978799999980499499999978897898886642377187347
Q gi|254780413|r 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 (820)
Q Consensus 686 l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~ 765 (820)
|.+++++.-+.|.||+.+|+++|.|||+|||||||+||+|+|++...++| ++|+|+|||+||+|++++||+|.|||+|.
T Consensus 218 I~~~~pd~~~~~~G~e~~L~SAf~NLv~NAikYTp~gg~I~v~W~~~~~g-a~fsV~DtG~GI~~eHipRLTERFYRVD~ 296 (339)
T TIGR02966 218 ITFEIPDAGLDLLGNEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDEGG-AEFSVTDTGIGIAPEHIPRLTERFYRVDK 296 (339)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCE-EEEEEEECCCCCCHHHCCCCCCEEEEECH
T ss_conf 99982388853014477799999999887530089988799999985780-39999877989873137754200123053
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 8766678886068999999996198699997889953999996
Q gi|254780413|r 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 (820)
Q Consensus 766 ~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~l 808 (820)
+.+|..|||||||||||.+++.|++++.|+|++|+||+|++.|
T Consensus 297 ~RSR~tGGTGLGLAIVKH~L~rH~a~L~I~Se~G~GS~F~~~F 339 (339)
T TIGR02966 297 SRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 339 (339)
T ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEC
T ss_conf 3415788984336899998741487899998853760688759
No 6
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=100.00 E-value=0 Score=541.64 Aligned_cols=346 Identities=26% Similarity=0.430 Sum_probs=294.6
Q ss_pred HHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 99999999999999742204307859983872156899884896032078644334564562778999998860698402
Q gi|254780413|r 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 (820)
Q Consensus 445 ~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
++|++......++++++.+||+.+|.+|+|+.+|+++.++|||++++++|+++..++.+.+. ...+......+...
T Consensus 254 ~~L~~~~~~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~~~~l~~~~~~---~~~~~~~l~~~~~~- 329 (607)
T PRK11360 254 QALREARTLNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQPYSMLFDNTQF---YSPVLDTLEHGTEH- 329 (607)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCHHH---HHHHHHHHHCCCCC-
T ss_conf 99999999899998610466999979994999838999985879789859679995795767---79999998537742-
Q ss_pred EEEEEEEECCCCCEEEEEEEEEECCCC----CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 234888763897289999998871788----7399998651444434576544668878999999999985234531748
Q gi|254780413|r 525 LEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 (820)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL 600 (820)
...+.....+++ .+.+..+..++.+. .|++++++|||++|+.|+++.++++. .++++|+|+|||||||||
T Consensus 330 ~~~~~~~~~~~~-~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~erl-----aalGe~~A~vaHElRnPL 403 (607)
T PRK11360 330 VALEISFPGRDR-TIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARAERL-----AALGELMAGVAHEIRNPL 403 (607)
T ss_pred CCEEEEECCCCC-EEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_conf 124899605883-49999998535768985889999999577899999999999999-----999999999899871549
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997312687788899999999999899999999999998664318852000331799999999999999987
Q gi|254780413|r 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 (820)
Q Consensus 601 ~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~ 680 (820)
++|.||+++|.+.. .++..++|++.|.++.+||.+||+|||+|||.+.+ .++++++++++++++..+++.+.
T Consensus 404 t~I~g~~elL~~~~----~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~----~~~~v~l~~l~~~~~~~~~~~~~ 475 (607)
T PRK11360 404 TAIRGYVQILRQQT----SDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHS----QWQQVSLNALVEEVLVLVQTAGV 475 (607)
T ss_pred HHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCEECHHHHHHHHHHHHHHHHH
T ss_conf 99999999986689----98799999999999999999999999985277888----88478699999999999999888
Q ss_pred HCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 37808999737988468988899999999999888871889787999999804994999999788978988866423771
Q gi|254780413|r 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 681 ~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
.+++.++.++++.+|.|.+|+.+|+|||.||+.||+||+++||+|+|++....++.+.|+|+|||+|||++.+++||+||
T Consensus 476 ~~~i~l~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a~~~~g~I~i~~~~~~~~~v~i~V~D~G~GI~~e~~~~IFepF 555 (607)
T PRK11360 476 QARVDFITELDNELPPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLELLKKIFDPF 555 (607)
T ss_pred HCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf 67968999818988769988899999999999996286289967999999936987999999867686989996455897
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 761 ~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
||+| .+||||||+|||+||++|||+|+|+|.||+||+|+|+||+....
T Consensus 556 ~ttk------~~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LPl~~~~ 603 (607)
T PRK11360 556 FTTK------ASGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILPINPQG 603 (607)
T ss_pred CCCC------CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 5489------99813379999999998899899996699986999998068988
No 7
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=0 Score=530.01 Aligned_cols=346 Identities=21% Similarity=0.336 Sum_probs=286.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67888899999999999999999999742204307859983872156899884896032078644334564562778999
Q gi|254780413|r 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 (820)
Q Consensus 433 ~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~ 512 (820)
+.......+...++|+...++|+.+++++||||+++|.+|+|..||++|+++|||...+..|+++..++.... ...+
T Consensus 79 l~~~~~~~~~~~~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G~~~~~~~G~~I~~Lir~p~---f~~~ 155 (431)
T PRK11006 79 LHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGLRWPEDNGQNILNLLRYPE---FTQY 155 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHCCCCHHHHHCCHH---HHHH
T ss_conf 9999998799999999999999999964897699998999588356999998389983326997789808845---9999
Q ss_pred HHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99886069840223488876389728999999887178873999986514444345765446688789999999999852
Q gi|254780413|r 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 (820)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~v 592 (820)
+.. .......+ .....++.+.+.. .+..+ +..+.++||||++|+.|+ +|.+|+|+|
T Consensus 156 ~~~---~~~~~p~~----~~~~~~~~le~~~--~p~~~-~~~llv~rDiT~~~~lE~--------------~R~dFvAnv 211 (431)
T PRK11006 156 LKT---RDFSRPLN----LVLNNGRHLEIRV--MPYTE-GQLLMVARDVTQMHQLEG--------------ARRNFFANV 211 (431)
T ss_pred HHC---CCCCCCEE----EECCCCCEEEEEE--EECCC-CCEEEEEEECCHHHHHHH--------------HHHHHHHHC
T ss_conf 862---66557625----5438874799999--77379-958999985659999999--------------999999862
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
Q ss_conf 34531748999999999973126877888999999999998999999999999986643188520003317999999999
Q gi|254780413|r 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 (820)
Q Consensus 593 sHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~ 672 (820)
|||||||||+|.||+|+|.+.. ..++...++++.|.++++||..||+|||++||+|+|+.....+++|+..+++.+.
T Consensus 212 SHELRTPLT~I~G~~ElL~~~~---~~~~~~~~~l~~i~~~~~Rm~~LI~dLL~lsrle~~~~~~~~~~vd~~~ll~~l~ 288 (431)
T PRK11006 212 SHELRTPLTVLQGYLEMMEEQP---LEGPMREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVLE 288 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 0866177999999999985799---9809999999999999999999999999997642587521365313999999999
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHH
Q ss_conf 99999987378089997379884689888999999999998888718897879999998049949999997889789888
Q gi|254780413|r 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 (820)
Q Consensus 673 ~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~ 752 (820)
...... ..++..+..++++.+ .|.+|+.+|+|||.||++||+||||+||+|.|++...++ .++|+|+|||+|||+++
T Consensus 289 ~~~~~l-~~~~~~i~~~~~~~~-~v~~D~~~L~qvl~NLi~NAikytp~g~~I~I~~~~~~~-~~~i~V~D~G~GI~~e~ 365 (431)
T PRK11006 289 REAQTL-SQKKHTITFEVDDSL-KVLGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPH-GAEFSVEDNGPGIAPEH 365 (431)
T ss_pred HHHHHH-HHHCCCCCCCCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC-EEEEEEEECCCCCCHHH
T ss_conf 999999-862566655689982-799789999999999999899747999779999999499-89999998387859899
Q ss_pred HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 66423771873478766678886068999999996198699997889953999996357
Q gi|254780413|r 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 (820)
Q Consensus 753 ~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~ 811 (820)
+++||+||||++.+.+++.+||||||||||.||++|||+|+|+|+||+||||+|+||..
T Consensus 366 ~~riFerFyR~d~~rs~~~gGtGLGLaIvK~Ive~HgG~I~v~S~~g~Gt~F~~~lP~~ 424 (431)
T PRK11006 366 IPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPER 424 (431)
T ss_pred HHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf 99862688828888879999554899999999998599899995599855999984865
No 8
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=539.66 Aligned_cols=237 Identities=33% Similarity=0.563 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44668878999999999985234531748999999999973126877888999999999998999999999999986643
Q gi|254780413|r 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 (820)
Q Consensus 572 ~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srie 651 (820)
.+|+.+||+||+|||.|||.||||||||||+|+|-+++|.+..+ ...|+.|++.|.+||+.|++|.||+|||||||
T Consensus 492 ~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L----~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIE 567 (1052)
T TIGR02956 492 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL----TSQQQQYLQVINRSGESLLDILNDILDYSKIE 567 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974887688741351132011368999975058998----88899999999862278999984675467761
Q ss_pred CC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 18--852000331799999999999999987378089997379884-689888999999999998888718897879999
Q gi|254780413|r 652 SG--KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 (820)
Q Consensus 652 aG--~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~ 728 (820)
+| -++++.+++|++.++.+|..+|+.+|..|+|.|.++.+.++| +..||..|||||+.|||+||||||..| .|+++
T Consensus 568 aGGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~G-sv~l~ 646 (1052)
T TIGR02956 568 AGGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRG-SVVLR 646 (1052)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCC-EEEEE
T ss_conf 08746534556778888999999999987740372567427654278875366134476765441320043452-69999
Q ss_pred EEECCCC-----EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEEEECCC
Q ss_conf 9980499-----49999997889789888664237718734787666788860689999999961986---999978899
Q gi|254780413|r 729 TTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK---FYIFSTPAK 800 (820)
Q Consensus 729 ~~~~~~~-----~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~---i~v~S~pG~ 800 (820)
+...++. ++.|.|.||||||+++.++.+|+||.|++.+ .++.+||||||||||+||++|+|+ |+|+|++|+
T Consensus 647 ~~l~~~~~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg-~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~ 725 (1052)
T TIGR02956 647 VSLNDDSSSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEG-RRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQ 725 (1052)
T ss_pred EEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 8855888986634788886247799879998543310121013-731377650689999999970888765016664587
Q ss_pred CEEEEEEECCCCCC
Q ss_conf 53999996357778
Q gi|254780413|r 801 GTLIEIIFPLYDTS 814 (820)
Q Consensus 801 Gt~f~v~lP~~~~~ 814 (820)
||||.+.||+....
T Consensus 726 GScF~F~lpl~~~~ 739 (1052)
T TIGR02956 726 GSCFWFTLPLARGK 739 (1052)
T ss_pred CCEEEEECCCCCCC
T ss_conf 50221242313375
No 9
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=0 Score=525.34 Aligned_cols=241 Identities=35% Similarity=0.556 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76544668878999999999985234531748999999999973126877888999999999998999999999999986
Q gi|254780413|r 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 (820)
Q Consensus 569 ~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~s 648 (820)
.||..++++++++|++|++|||+||||||||||+|+||+++|++..+ ++.+++|++.|.+++++|+.|||||||||
T Consensus 277 ~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~l----~~~q~~~l~~i~~s~~~Ll~lIndiLD~S 352 (920)
T PRK11107 277 VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPL----TPTQRDYLQTIERSANNLLAIINDILDFS 352 (920)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999996648654219999999999856999----99999999999999999999999999999
Q ss_pred HHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 64318852000331799999999999999987378089997379884-68988899999999999888871889787999
Q gi|254780413|r 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 649 rieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
|||+|+++++..+|||.+++++++.++.+.|..|++.+.+.+++++| .|.||+.||+||+.||++||||||+.|+ |.|
T Consensus 353 kiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~G~-I~v 431 (920)
T PRK11107 353 KLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-IDI 431 (920)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC-EEE
T ss_conf 9845983674016789999999999999999973987999978999730653899999999999999997188993-799
Q ss_pred EEEEC--CCC--EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf 99980--499--49999997889789888664237718734787666788860689999999961986999978899539
Q gi|254780413|r 728 STTHT--SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 (820)
Q Consensus 728 ~~~~~--~~~--~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~ 803 (820)
++... .++ .+.|+|+|||+||+++.+++||+||+|+++|.+|+|+||||||+|||+||++|||+|+|+|+||+||+
T Consensus 432 ~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~ 511 (920)
T PRK11107 432 LVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGST 511 (920)
T ss_pred EEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 99999647984899999999705869999997854201567654456798774299999999980991799954899748
Q ss_pred EEEEECCCCCC
Q ss_conf 99996357778
Q gi|254780413|r 804 IEIIFPLYDTS 814 (820)
Q Consensus 804 f~v~lP~~~~~ 814 (820)
|+|++|+....
T Consensus 512 F~Ftlpl~~~~ 522 (920)
T PRK11107 512 FWFHLPLDLNP 522 (920)
T ss_pred EEEEEECCCCC
T ss_conf 99999804766
No 10
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=0 Score=516.24 Aligned_cols=238 Identities=32% Similarity=0.523 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65446688789999999999852345317489999999999731268778889999999999989999999999999866
Q gi|254780413|r 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 (820)
Q Consensus 570 el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sr 649 (820)
++.+|+.++|.+|++|++|||+||||||||||+|+||+++|.+... ++++++|++.|.+|+++|+.||||+|||||
T Consensus 429 ~~~~Ar~~AE~AnrAKS~FLA~MSHEIRTPLNgIlG~~eLL~~~~l----~~~qr~~l~~I~~s~~~LL~lInDILD~Sk 504 (912)
T PRK11466 429 EHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA----LNAQRDDLRAITDSGESLLTILNDILDYSA 504 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999987139767759999999999847999----989999999999999999999999999999
Q ss_pred HHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 4318--852000331799999999999999987378089997379884-6898889999999999988887188978799
Q gi|254780413|r 650 IESG--KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 (820)
Q Consensus 650 ieaG--~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~ 726 (820)
||+| ++++..+||++.+++++++.++++.+..|++.+.+.+++++| .|.+|+.+|+||+.||++||||||+.| .|+
T Consensus 505 iEaG~~~l~l~~~pf~l~~ll~~v~~~~~~~a~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsNAiKFT~~G-~V~ 583 (912)
T PRK11466 505 IEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSNALRFTDEG-SIV 583 (912)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-EEE
T ss_conf 8189981388611568999999999999999983797899972799986086358899999999999870618996-799
Q ss_pred EEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf 99998049949999997889789888664237718734787666788860689999999961986999978899539999
Q gi|254780413|r 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 (820)
Q Consensus 727 v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v 806 (820)
+++. ..++.+.|+|+|||||||++.+++||+||+|++ ++++||||||+|||+||++|||+|+|+|+||+||+|+|
T Consensus 584 l~~~-~~~~~l~~~V~DTGiGI~~e~~~~IF~~F~Q~~----~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G~GS~F~~ 658 (912)
T PRK11466 584 LRSR-TDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 (912)
T ss_pred EEEE-ECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
T ss_conf 9999-869789999850899999999998844761588----99899266899999999987997999716998728999
Q ss_pred EECCCCCCCCC
Q ss_conf 96357778886
Q gi|254780413|r 807 IFPLYDTSHPH 817 (820)
Q Consensus 807 ~lP~~~~~~p~ 817 (820)
+||+.....|.
T Consensus 659 ~LPl~~~~~~~ 669 (912)
T PRK11466 659 RLPLRHATAPV 669 (912)
T ss_pred EEECCCCCCCC
T ss_conf 99777888787
No 11
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=0 Score=488.60 Aligned_cols=240 Identities=25% Similarity=0.444 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 6544668878999999999985234531748999999999973126877888999999----999998999999999999
Q gi|254780413|r 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA----NYIDRSGNLVLDIVNDLL 645 (820)
Q Consensus 570 el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l----~~i~~~~~~l~~li~dlL 645 (820)
.|++.++++.++.++|++|+|+||||||||||+|+||+++|.....++. ++...+++ +.+.+..++|.+||+|||
T Consensus 134 ~Lrqe~E~L~e~~r~K~~Fla~vSHELRTPLTaI~g~~e~L~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~L~~LI~DLL 212 (378)
T PRK09303 134 VLRQENETLLEQLKFKDRLLAMLAHDLRTPLTAASLAVETLELGQIDPS-EELSPALIEQLQDQARRQLEEIERLITDLL 212 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999899999999999999997367615319999999999864257974-166799999999999999999999999999
Q ss_pred HHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 98664318852000331799999999999999987378089997379884689888999999999998888718897879
Q gi|254780413|r 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 (820)
Q Consensus 646 d~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v 725 (820)
|+||+++|++++.++++||.+++.+++..+++.+..+++.+..++++++|.|.||+.+|+|||.|||+|||||||+||.|
T Consensus 213 d~sr~e~g~l~l~~~~~dL~~lv~evi~~~~~~a~~k~i~l~~dip~dlp~V~aD~~rL~QVl~NLL~NAiKyT~~gG~I 292 (378)
T PRK09303 213 EVGRTRWEALQFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQRRIRQVLLNLLDNAIKYTPEGGTI 292 (378)
T ss_pred HHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99887538863146887699999999999898998389789997689997287689999999999999999858999869
Q ss_pred EEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEE
Q ss_conf 99999804994999999788978988866423771873478766678886068999999996198699997889953999
Q gi|254780413|r 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 (820)
Q Consensus 726 ~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~ 805 (820)
+|++..+.+..|.|+|+|||+|||++.+++||+||||.+.+ +..+||||||+|||+||++|||+|||+|+||+||||+
T Consensus 293 ~I~~~~~~~~~V~isV~DtG~GIp~e~~~rIFe~F~R~~~s--~~~~GtGLGLaIvk~IVe~HgG~I~V~S~~g~GS~Ft 370 (378)
T PRK09303 293 TLTMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD--EGTEGYGIGLSVCRRIVEVHYGQIWVDSEPGQGSCFH 370 (378)
T ss_pred EEEEEEECCCEEEEEEEEECCCCCHHHHHHHCCCCEECCCC--CCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 99999813998999999807888989998756363445689--9988312799999999998799799994399835999
Q ss_pred EEECCCC
Q ss_conf 9963577
Q gi|254780413|r 806 IIFPLYD 812 (820)
Q Consensus 806 v~lP~~~ 812 (820)
|+||++.
T Consensus 371 ~tLPv~r 377 (378)
T PRK09303 371 FTLPVYR 377 (378)
T ss_pred EEEECCC
T ss_conf 9982478
No 12
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=100.00 E-value=0 Score=455.25 Aligned_cols=328 Identities=20% Similarity=0.328 Sum_probs=268.7
Q ss_pred HHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECC
Q ss_conf 99997422043078599838721568998848960320786443345645627789999988606984022348887638
Q gi|254780413|r 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 (820)
Q Consensus 455 ~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (820)
..+++++++||+++|.+|+|+++|++++++|||+.++++|+++..++++.+.. ...+......+.....+ +... ..
T Consensus 10 ~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~ 85 (348)
T PRK11073 10 GQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLN--IELMQESLQAGQGFTDN-EVTL-VI 85 (348)
T ss_pred HHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCC--HHHHHHHHHCCCCCCCC-EEEE-EE
T ss_conf 99998660796499897970128399999978598998599689984665301--89999999738974132-3999-98
Q ss_pred CCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 97289999998871788739999865144443457654466887899999999998523453174899999999997312
Q gi|254780413|r 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 (820)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~ 614 (820)
+++.+++..+..+..+ ..++..++|||++|+.++++.+..++ .++.+|++++||||||||++|.||+++|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~l~~~~di~~~k~l~~e~~~~~~~-----~~~~e~~~~iaHelrnPL~~I~g~~~ll~~~- 158 (348)
T PRK11073 86 DGRSHILSLTAQRLPE-GMILLEMAPMDNQRRLSQEQLQHAQQ-----VAARDLVRGLAHEIKNPLGGLRGAAQLLSKA- 158 (348)
T ss_pred CCEEEEEEEEEEECCC-CEEEEEEEECHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_conf 9969999999998258-68999999627999999999999999-----9999999840187478579999999999741-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 68778889999999999989999999999999866431885200033179999999999999998737808999737988
Q gi|254780413|r 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 (820)
Q Consensus 615 ~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~l 694 (820)
..++...+|++.|.++++||.++|+++|+++|... ..+.++..+++++..++.... .+++.+..++.+.+
T Consensus 159 ---~~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~ 228 (348)
T PRK11073 159 ---LPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITESIHKVAERVVQLVSLEL-PDNVRLIRDYDPSL 228 (348)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCC
T ss_conf ---79989999999999999999999999864412688------775479999999999999856-57809999607888
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEECCC---------CEEEEEEEECCCCCCHHHHHHHCCCCEEEC
Q ss_conf 468988899999999999888871-8897879999998049---------949999997889789888664237718734
Q gi|254780413|r 695 PRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSN---------EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 (820)
Q Consensus 695 p~v~~D~~~l~Qvl~NLl~NAik~-t~~gg~v~v~~~~~~~---------~~v~i~V~DtG~GI~~~~~~~iFepF~~~~ 764 (820)
|.+.+|+.+|+|||.|||+||+|| ++.||.|.|.+..... ..++|+|+|||+|||++.+++||+||++++
T Consensus 229 ~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf~ttk 308 (348)
T PRK11073 229 PELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 72644687889999999999999836699779999964333221453233048999999088789899997377836799
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 7876667888606899999999619869999788995399999635
Q gi|254780413|r 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 765 ~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
.+||||||+|||+||++|||+|+|+|.||+ |+|+|+||+
T Consensus 309 ------~~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl 347 (348)
T PRK11073 309 ------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ------CCCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEE
T ss_conf ------898177899999999986998999982891-999999963
No 13
>PRK13560 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=413.82 Aligned_cols=675 Identities=11% Similarity=0.071 Sum_probs=448.5
Q ss_pred EEEEEEECCCCCEE--EECHHHHHHHCCCHHHHCC---CCHHHHHCCCCCCC----HHH----HHHHHHCCCCCCCEEEE
Q ss_conf 10599997999099--9667899662899789749---96888204016882----389----99998637961671688
Q gi|254780413|r 83 VRFTWNIDAHGYLK--EISEELPKTIGNYAFKMIG---MRLCDVSDILHIDP----NNH----IGDLLKRQNTWYGKTTL 149 (820)
Q Consensus 83 ~rfvw~~D~eGr~~--~vn~~~~~~~G~~~~e~iG---r~~~e~~~~~~~~p----~~~----i~~~l~~~~~~~~~~~~ 149 (820)
--|-|.+|++|.|. ||+.+.-++.-..+.+++- +-| -+.++.+.+- ..+ ++.+|+. +.|+-+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (807)
T PRK13560 80 GMFLFALDGDGTFSFPSLLDANGELAAIAKHDLMADKGLLA-MLIGGDDGDFFFANPFRSAETIAMALQS-DDWQEEEGH 157 (807)
T ss_pred EEEEEEECCCCCCCCHHHHHHCHHHHHHCHHHHCCCHHHHH-HEECCCCCCEECCCHHHHHHHHHHHCCC-CCHHHHHCC
T ss_conf 07999975887404356765233688618043326332565-3115466670123467679999875278-865875166
Q ss_pred ECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 61479883799998630015688736305566898522103779999986324334454301432002334421014445
Q gi|254780413|r 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 (820)
Q Consensus 150 ~~~~g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (820)
.+..+. .|++....|-+-.+|+.. +- |..-|++++|++|...+.....++.+.++.+..+.+-+....+.+.+.
T Consensus 158 ~~~~~~---~~~~~~~~~~~~~~~~~~-~~--g~~~DITERKraE~rl~~ql~flq~LlDnipdpvF~kD~~G~ylgcN~ 231 (807)
T PRK13560 158 FRCGDG---RFIDCCLRFERHAHADDQ-VD--GFAEDITERKRAEERIDEALHFLQQLLDNIADPAFWKDEDAKVFGCND 231 (807)
T ss_pred CCCCCC---EEEEECCCHHCCCCHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECH
T ss_conf 666995---056630542108973455-55--677876777789999999999999998548874699779951896209
Q ss_pred CCCCC-C-CHHCCCCCCCCCCCCHHHHH---HHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHH--HHHCCCHHHH----H
Q ss_conf 53100-1-10001334410136101222---20002101520111000000024402333555--4210110122----2
Q gi|254780413|r 230 PPPHL-R-MKNKVSSLTEYYAHKDDVLK---TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ--YFGTLQNNSK----E 298 (820)
Q Consensus 230 ~~~~~-~-~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~ 298 (820)
..... . ..+.+.........+..... ........ .......+......++...+... ...+..+..+ -
T Consensus 232 afe~~~G~~re~i~G~ti~Dl~p~e~ad~y~~~d~~~l~-~~~~~~~E~~v~~~DG~~~~~~v~~nka~~~d~~g~~~Gl 310 (807)
T PRK13560 232 AACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFD-ADGSQIIEAEFQNKDGRTRPVDVIFNHAEFDDKENHCAGL 310 (807)
T ss_pred HHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCEEEE
T ss_conf 999880999999568610127815568999875088641-8875575520377998575799998622333878866568
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CEEEEE-CHHHHHHHCCCCHHHHCCCCC-CHH-------
Q ss_conf 3321000110134565455565789999634997899709-958872-068898837984477224676-112-------
Q gi|254780413|r 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYA-NPSFLLLTKYKSVDDIEIAGG-LST------- 368 (820)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~ild~lp~gv~i~~~-gri~~~-N~a~~~l~G~~~~e~l~~~~~-~~~------- 368 (820)
.....+.+.+..++..+++++.+++.+++++|.++++.+. |+++|+ |++..+++||...+.++..-| .+.
T Consensus 311 vGv~~DITeRK~aEe~LresEer~R~i~E~a~~gI~~~D~~g~i~~~~n~aae~m~G~s~eE~lg~~lw~~~pe~~~e~~ 390 (807)
T PRK13560 311 VGAITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPELNEEFW 390 (807)
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHC
T ss_conf 88876156778899999998999999987366534786267615761261678762687688607743356834413331
Q ss_pred -----HHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -----202455451356789998750586655999999997389449999996324333200233344567888899999
Q gi|254780413|r 369 -----LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 (820)
Q Consensus 369 -----l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~ 443 (820)
.+.....+......++......|..++. ......+++|+..++.. .+.+..|..+...+..++..|||++|++
T Consensus 391 ~~~~~~~~pdgr~~~~~~c~~a~~~r~g~~~~g-~E~~~~RkDGt~~~~~~-~~~pL~D~dG~~~gal~i~~DITERKqA 468 (807)
T PRK13560 391 CGDFQEWYPDGRPMAFDACPMAKTIKGGKIFDG-QEVLIEREDDGPADCSA-YAEPLHDADGNIIGAIALLVDITERKQV 468 (807)
T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC-CEEEEEECCCCEEEEEE-CCEEEECCCCCEEEEEEHHHCCHHHHHH
T ss_conf 340655166656343101236677613787788-63799906996577886-1302256788853311001124277889
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHEEECCC-CEEEEEHHHHHHHHCCCHHHCCC--CCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999999999997422043078599-83872156899884896032078--64433456456277899999886069
Q gi|254780413|r 444 KRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLD 520 (820)
Q Consensus 444 ~~~L~~~~~~L~~ile~~~~gI~~~D~~-G~i~~~N~a~~~l~G~~~~el~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (820)
+++|+.++ .++++++..++.++.+ |-.+.+|.....+|||+++|+++ ..+..+++|++.+.+...+......|
T Consensus 469 EeaLr~sn----~iLEnSp~il~~~~~~~gw~ve~vs~~v~~fGYt~eE~isg~~~~~~lvhPeDr~~v~~~l~~~~~~G 544 (807)
T PRK13560 469 EEQLLLAN----LIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFAAIIHPADLEQVAAEVAEFAAQG 544 (807)
T ss_pred HHHHHHHH----HHHHCCCCEEEEEECCCCCCEEEECCHHHHHCCCHHHHCCCCEEHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999988----88752974047875157862375232145508887884242310120579788888999999874157
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEECCCCCE----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 840223488876389728999999887178873----9999865144443457654466887899999999998523453
Q gi|254780413|r 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 (820)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHEl 596 (820)
. ..+..+.+.+.++|.+.|+..+.....+..| +.++++|||++|++|+.++. +...|.-+|.-|.|-+
T Consensus 545 ~-~~f~~eyRi~~kdGsvrWI~~~~~~irDe~G~V~~~~giv~DIT~~k~aee~l~a-------sL~EKE~LLkEIHHRV 616 (807)
T PRK13560 545 V-DRFEQEYRILGKGGAVCWIDDQSAAERDEEGQISHFEGIVIDISERKHAEEKIKA-------ALTEKEVLLKEIHHRV 616 (807)
T ss_pred C-CCCCEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_conf 5-5220168887699968999701356117888754444467435288889999999-------9998899999877675
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 17489999999999731268778889999999999989999999999999866431885200033179999999999999
Q gi|254780413|r 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 (820)
Q Consensus 597 rtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~ 676 (820)
+|.|..|.+.+. |+.++ ..+++.++.+.....-... ..+|.+.|--| -++..+++.+.+.+.+..+.
T Consensus 617 KNNLQiIsSLL~-LQar~---~~d~ear~aL~esq~RI~S-mAlVHe~Ly~S--------~dl~~Id~~~yi~~L~~~L~ 683 (807)
T PRK13560 617 KNNLQIISSLLD-LQAEK---LHDEEAKCAFAESQDRICA-MALAHEKLYQS--------EDLADIDFLDYIESLTAHLK 683 (807)
T ss_pred HHHHHHHHHHHH-HHHHH---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHCC--------CCCCEECHHHHHHHHHHHHH
T ss_conf 203999999999-88765---5999999999999999999-99999998569--------99765729999999999999
Q ss_pred HHHHHC--CEEEEEEECCCCCEEEEC-HHHHHHHHHHHHHHHHHCCCC---CCEEEEEEEECCCCEEEEEEEECCCCCCH
Q ss_conf 998737--808999737988468988-899999999999888871889---78799999980499499999978897898
Q gi|254780413|r 677 LYANEK--RILIRTSFANNIPRILAD-LRSVKQIALNILSNAIHFTPS---GGQIIISTTHTSNEEVILRVRDTGVGMTN 750 (820)
Q Consensus 677 ~~a~~~--~i~l~~~~~~~lp~v~~D-~~~l~Qvl~NLl~NAik~t~~---gg~v~v~~~~~~~~~v~i~V~DtG~GI~~ 750 (820)
...... .|.++++..+ ..+-.| +.-|-.|+.+|++||+||.-+ .|.|.|+.....++.+.|+|+|||+|||+
T Consensus 684 ~s~~~~~~~I~l~vd~d~--~~L~~d~AiPLgLIlnELVtNAlKHAF~~~~~G~I~Isl~~~~~~~v~L~V~DnG~GlP~ 761 (807)
T PRK13560 684 NSFAIDFGRIDCKIDADD--GCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPA 761 (807)
T ss_pred HHHCCCCCEEEEEEECCC--CEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCC
T ss_conf 973789863899997367--056588876799999999999898608999982799999986799899999879815899
Q ss_pred HHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 886642377187347876667888606899999999619869999788995399999635777
Q gi|254780413|r 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 751 ~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
. |++ ..+.+|||.|++.||++.+|+|.++|. .||+|+|+||+..+
T Consensus 762 ~-----fd~-----------~~s~sLGL~LV~~Lv~QL~G~l~i~s~--~Gt~f~I~FPl~p~ 806 (807)
T PRK13560 762 G-----FDF-----------RAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSPA 806 (807)
T ss_pred C-----CCC-----------CCCCCCHHHHHHHHHHHCCCEEEEECC--CCEEEEEEEECCCC
T ss_conf 9-----897-----------889997699999999974989999859--98699999718999
No 14
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=0 Score=441.66 Aligned_cols=236 Identities=25% Similarity=0.424 Sum_probs=214.2
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 65144443457654466887899999999998523453174899999999997312687788899999999999899999
Q gi|254780413|r 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 (820)
Q Consensus 559 ~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~ 638 (820)
+++++|++.|+++.+.++.+ +.++++|+|||||||||++|.||+++|.++.. .+++.++|++.|.++++|+.
T Consensus 217 ~~~~~R~~Lq~el~r~EKLA-----aLG~LAAgVAHEIRNPLtsI~G~AqlL~~~~~---~~~e~~e~~~iI~~E~~RL~ 288 (455)
T PRK10364 217 RYLRSRQLLQDEMKRKEKLV-----ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAP---AGGEAHQLAQVMAKEADRLN 288 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf 77899999999999998999-----99999999899885649999999999867699---98579999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999866431885200033179999999999999998737808999737988468988899999999999888871
Q gi|254780413|r 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 (820)
Q Consensus 639 ~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~ 718 (820)
+||++||+|||. .++.++++|+++++++++.++++.+..++|.++...++.+|.|.+|+.+|+|||.|||.||++|
T Consensus 289 ~iI~~LL~faRp----~~~~~~~vdL~~li~~~l~l~~~~a~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A 364 (455)
T PRK10364 289 RVVSELLELVKP----THLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQA 364 (455)
T ss_pred HHHHHHHHHHCC----CCCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999987289----9898848849999999999998688648909999738888759888999999999999999997
Q ss_pred CCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 88978799999980499499999978897898886642377187347876667888606899999999619869999788
Q gi|254780413|r 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 (820)
Q Consensus 719 t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p 798 (820)
+++||.|+|++.. .++.+.|+|+|||+|||++.+++||+||||+| .+||||||+|||+||++|||+|+++|.|
T Consensus 365 ~~~gg~I~I~~~~-~~~~V~I~V~DnG~GIp~E~l~rIFePFfTTK------~~GTGLGLaIv~~IVe~HgG~I~v~S~~ 437 (455)
T PRK10364 365 IGQHGVISVTASE-SGAGVKISVTDSGKGIAADQLEAIFTPYFTTK------AEGTGLGLAVVHNIVEQHGGTIQVASQE 437 (455)
T ss_pred CCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCC------CCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 5899779999998-59989999997699979789878658976489------8970288999999999889979999559
Q ss_pred CCCEEEEEEECCCCC
Q ss_conf 995399999635777
Q gi|254780413|r 799 AKGTLIEIIFPLYDT 813 (820)
Q Consensus 799 G~Gt~f~v~lP~~~~ 813 (820)
|+||+|+|+||+...
T Consensus 438 G~GT~FtI~LPl~a~ 452 (455)
T PRK10364 438 GKGATFTLWLPVNIT 452 (455)
T ss_pred CCCEEEEEEEECCCC
T ss_conf 998799999827875
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=0 Score=437.37 Aligned_cols=231 Identities=25% Similarity=0.381 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78999999999985234531748999999999973126877888999999999998999999999999986643188520
Q gi|254780413|r 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 (820)
Q Consensus 578 ~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l 657 (820)
+.+.++.|+.||+.|||||||||++|+|++++|..... ..+++..+++..|..++.++.+||++|||+||||+|.+.+
T Consensus 657 ~aE~ErLRsalLssVSHDLRTPLtsI~G~a~~L~~~~~--~~~~~~~~~~~~I~~e~~rL~rLV~nLLdmsRle~G~l~l 734 (895)
T PRK10490 657 ASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLA--SEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNL 734 (895)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 77777899999986034357869999999999854777--8828899999999999999999999999998763699766
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEE
Q ss_conf 00331799999999999999987378089997379884689888999999999998888718897879999998049949
Q gi|254780413|r 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 (820)
Q Consensus 658 ~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v 737 (820)
..+++++.++|.+++..+++....++|.+ ++++++|.|.+|+.+|+|||.|||.||+||||+|+.|.|+.. ..++.+
T Consensus 735 ~~~~~~l~evv~~al~~~~~~~~~~~i~v--~~~~~~~~v~~D~~lleQVL~NLl~NAiKytp~~~~I~v~a~-~~~~~v 811 (895)
T PRK10490 735 KKEWLTLEEVVGSALQMLEPGLSQHPINL--SLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAH-VEGENL 811 (895)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEE--EECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-EECCEE
T ss_conf 46420699999999999986612696799--956987069878999999999999999985899970999999-979999
Q ss_pred EEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 999997889789888664237718734787666788860689999999961986999978899539999963577788
Q gi|254780413|r 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 738 ~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
.|+|+|+|+|||++.+++||++|+|.+.+ +..+||||||+|||+||++|||+|+++|.||.||+|+|+||+..+-.
T Consensus 812 ~i~V~D~G~GIp~~~~~~IFe~F~R~~~~--~~~~GtGLGLaI~k~IveAhGG~I~~~s~~ggGa~F~~~LPl~~pP~ 887 (895)
T PRK10490 812 QLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAVPGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLPQEKPPE 887 (895)
T ss_pred EEEEEEECCCCCHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCCCC
T ss_conf 99999808987979999755687128999--99997447899999999987998999956998069999832999899
No 16
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=0 Score=443.35 Aligned_cols=234 Identities=25% Similarity=0.379 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44443457654466887899999999998523453174899999999997312687788899999999999899999999
Q gi|254780413|r 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 (820)
Q Consensus 562 te~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li 641 (820)
|||++.|.+|++++++ .+.+++.++|+||+||||++|+||+++++.+.. + ++..+++++.|.++++|...||
T Consensus 435 tER~~LE~qL~qAQKm-----EAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~-~--~~~~~~~L~~I~~aa~Ra~~Lv 506 (831)
T PRK13837 435 TERDALERRLEHARRL-----EAVGTLASGIAHNFNNILGAILGYAEMALNKLR-R--HSRARRHIDEIISSGDRARLII 506 (831)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999-----999999989999870089999999999862069-9--8477899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999866431885200033179999999999999998737808999737988468988899999999999888871889
Q gi|254780413|r 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 (820)
Q Consensus 642 ~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~ 721 (820)
++||+||| +.+..++++||+++|.+++.+++... .++|.|.+.+++++|.|.+|+.+|+||++||+.||.++|+.
T Consensus 507 ~qLL~FSR----~~~~~~~~vdl~~lv~e~~~llr~~l-~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~ 581 (831)
T PRK13837 507 DQILTFGR----KGERRTKPFSLSELVTEIAPLLRVSL-PPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDE 581 (831)
T ss_pred HHHHHHHC----CCCCCCCEECHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999858----99997717749999999999999875-89869999718988538887999999999999999997679
Q ss_pred CCEEEEEEEEC--------------CCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 78799999980--------------4994999999788978988866423771873478766678886068999999996
Q gi|254780413|r 722 GGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 (820)
Q Consensus 722 gg~v~v~~~~~--------------~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~ 787 (820)
||.|+|++... ++.+|+|+|+|||+||+++.++|||||||||| ++|||||||+|++||+.
T Consensus 582 gG~l~I~~~~~~~~~~~~~~~~~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFFTTK------~~GTGLGLAvV~gIV~~ 655 (831)
T PRK13837 582 NGRVDIRLSRVDLRKPKVLAHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTTR------ARGTGLGLATVHGIVSA 655 (831)
T ss_pred CCEEEEEEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCC------CCCCCCCHHHHHHHHHH
T ss_conf 986999985553363232115778998989999986799989899966048986788------99887469999999998
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 198699997889953999996357778
Q gi|254780413|r 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 788 hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
|||.|.|+|+||+||+|+|+||..+..
T Consensus 656 hgG~I~V~S~pG~GTtF~v~LP~~~~~ 682 (831)
T PRK13837 656 HAGYIDVQSTVGRGTRFDVYLPPSSKV 682 (831)
T ss_pred CCCEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 698699972699971899983179887
No 17
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=426.74 Aligned_cols=356 Identities=24% Similarity=0.390 Sum_probs=292.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7888899-999999999999999999742204307859983872156899884896032078644334564562778999
Q gi|254780413|r 434 EPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 (820)
Q Consensus 434 ~~dit~~-~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~ 512 (820)
..+.+.+ +.+++.++++..+|.+++-.+.|||+..|..|.|+.+|..+..++|.+.+++.|+++.+++.-++.-...+.
T Consensus 92 fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~d~y~~~dL 171 (459)
T COG5002 92 FNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLKIEDTYTFEDL 171 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCCHHHHHCCCCCEEHHHH
T ss_conf 97899999999876788888899899987076576457786899350799984867787716537888577543028888
Q ss_pred HHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECC--CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988606984022348887638972899999988717--88739999865144443457654466887899999999998
Q gi|254780413|r 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 (820)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla 590 (820)
+.. .....++... ..++-.+.+..+..+.. ...|+++|+.|+||+.+.|+|. -+|.|
T Consensus 172 ~e~----~~s~lld~~~---~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~Er--------------Refva 230 (459)
T COG5002 172 VEK----NDSLLLDSSD---EEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERER--------------REFVA 230 (459)
T ss_pred HHC----CCCEEEEECC---CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHH--------------HHHHH
T ss_conf 725----9828986047---88637999988888511466440699873143878889999--------------99988
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH
Q ss_conf 5234531748999999999973126877888-999999999998999999999999986643188520003317999999
Q gi|254780413|r 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 (820)
Q Consensus 591 ~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~-~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~ 669 (820)
++||||||||+++.+|.|.|.+ |...+. -...|+..-....+||.+||||||.+||+..+..+|..+.+|+..-+.
T Consensus 231 nvSHElRTPltsmksyLEALe~---ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~fl~ 307 (459)
T COG5002 231 NVSHELRTPLTSMKSYLEALEE---GAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLN 307 (459)
T ss_pred HCCHHHCCCHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6140314736789999999746---8744712326899874788999999999998772576325666578887488999
Q ss_pred HHHHHHHHHHHHCCEE-EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCC
Q ss_conf 9999999998737808-999737988468988899999999999888871889787999999804994999999788978
Q gi|254780413|r 670 EAISLVQLYANEKRIL-IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 (820)
Q Consensus 670 ~~~~~~~~~a~~~~i~-l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI 748 (820)
..+..+...+..+.+. +...++...-+|..|+..+.||+.|+|+||+||+|.||+|+|++... +.++.++|+|.|.||
T Consensus 308 ~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-~~~v~iSI~D~G~gI 386 (459)
T COG5002 308 EIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-ETWVEISISDQGLGI 386 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCEEEEEECCCCCCC
T ss_conf 9999999987567788999608888648996706899999999877752489997399999630-758999974688899
Q ss_pred CHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 988866423771873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 749 ~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
|.+.+++||+.|||++...+|+.+||||||||+|.||++|||+||++|..|+||+|+++||-....
T Consensus 387 Pk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~~ 452 (459)
T COG5002 387 PKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGEA 452 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 840689999988522366540378776129999999997098577760458861799995466766
No 18
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=0 Score=413.49 Aligned_cols=244 Identities=23% Similarity=0.365 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43457654466887899999999998523453174899999999997312687788899999999999899999999999
Q gi|254780413|r 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 (820)
Q Consensus 565 k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dl 644 (820)
.......-+....++.....+.+|++++||||||||++|.|++++|.+... +...+++..|.....+|.++|+||
T Consensus 221 g~La~~fN~Ma~~Le~~~~~rr~f~a~iSHELRTPLt~i~g~le~l~d~~~-----~~~~e~l~~i~~e~~rl~~Lv~dL 295 (467)
T PRK10549 221 GKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-----KFTPESVASLQAEVGTLTKLVDDL 295 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998888751589999999999871655-----457999999999999999999999
Q ss_pred HHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99866431885200033179999999999999998737808999737988468988899999999999888871889787
Q gi|254780413|r 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 (820)
Q Consensus 645 Ld~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~ 724 (820)
|++|+.+.|.+.+..+++|+++++++++..+++.+..+++.+..++++.+ .|.+|+.+|+|||.|||+||+|||++||.
T Consensus 296 l~ls~~~~~~~~~~~~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~-~v~~D~~~L~qvl~NLl~NAikyt~~~g~ 374 (467)
T PRK10549 296 HQLSLSDEGALAYQKTPVDLVPLLEVAGGAFRERFASRGLTLQFSLPDSA-TVFGDPDRLMQLFNNLLENSLRYTDSGGS 374 (467)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99987545675446733338999999999999999845958999759884-69977999999999999999984899987
Q ss_pred EEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 99999980499499999978897898886642377187347876667888606899999999619869999788995399
Q gi|254780413|r 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 (820)
Q Consensus 725 v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f 804 (820)
|.|++... ++.+.|+|+|+|+|||++++++||+||||++.+.++..+|+||||||||+||++|||+|+++|.||.||+|
T Consensus 375 I~I~~~~~-~~~v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f 453 (467)
T PRK10549 375 LHISAEQH-DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSI 453 (467)
T ss_pred EEEEEEEE-CCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEE
T ss_conf 99999997-99999999981888798999986689873888888999961289999999999839989999679985799
Q ss_pred EEEECCCCCCC
Q ss_conf 99963577788
Q gi|254780413|r 805 EIIFPLYDTSH 815 (820)
Q Consensus 805 ~v~lP~~~~~~ 815 (820)
+|+||+.....
T Consensus 454 ~i~LPl~~~~~ 464 (467)
T PRK10549 454 TVELPLERDLQ 464 (467)
T ss_pred EEEEECCCCCC
T ss_conf 99952799988
No 19
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=100.00 E-value=0 Score=408.01 Aligned_cols=238 Identities=25% Similarity=0.428 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43457654466887899999999998523453174899999999997312687788899999999999899999999999
Q gi|254780413|r 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 (820)
Q Consensus 565 k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dl 644 (820)
.+....+..+..++|. .....+|++++||||||||++|.|++|+|.+. ...++.++|++.|..+++||.+||+||
T Consensus 237 ~~La~a~n~M~~~Le~-~~~~e~fva~vSHELRTPLt~I~g~~ElL~~~----~~~e~~~~~l~~I~~e~~RL~~LV~~L 311 (475)
T PRK11100 237 RDLAQALESMRVKLEG-KAYVEQYVQTLTHELKSPLAAIRGAAELLQED----PPPEDRQRFTGNILAQSARLQQLIDRL 311 (475)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999997-99999999854086511799999999997389----998999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99866431885200033179999999999999998737808999737988468988899999999999888871889787
Q gi|254780413|r 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 (820)
Q Consensus 645 Ld~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~ 724 (820)
|++||+|+|...+..+++|+++++++++..+++.+..+++.+....++ +.|.||+.+|+||+.|||.||+||+|+||.
T Consensus 312 L~larle~~~~~~~~~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~~--~~v~~D~~~L~qvl~NLl~NAikys~~~g~ 389 (475)
T PRK11100 312 LELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPDD--AAVLGDPFLLRQALGNLLDNAIDFTPEGGT 389 (475)
T ss_pred HHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 999875158876755487599999999999999998689299995787--669708999999999999999973899977
Q ss_pred EEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 99999980499499999978897898886642377187347876667888606899999999619869999788995399
Q gi|254780413|r 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 (820)
Q Consensus 725 v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f 804 (820)
|.|++... ++.+.|+|+|+|+|||++.+++||+|||+++.+.+ ..+||||||+|||+||++|||+|+++|.||+||+|
T Consensus 390 I~I~~~~~-~~~~~i~V~D~G~GIp~e~l~~IFerFys~~r~~~-~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~f 467 (475)
T PRK11100 390 ITLSAERD-GEQVALSVEDSGPGIPDYALPRIFERFYSLPRPAN-GRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLA 467 (475)
T ss_pred EEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEE
T ss_conf 99999996-99999999984888788999886167803777999-98863079999999999859989999669980799
Q ss_pred EEEECCC
Q ss_conf 9996357
Q gi|254780413|r 805 EIIFPLY 811 (820)
Q Consensus 805 ~v~lP~~ 811 (820)
+|+||.+
T Consensus 468 ~i~LP~~ 474 (475)
T PRK11100 468 TLTLPRH 474 (475)
T ss_pred EEECCCC
T ss_conf 9993899
No 20
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=0 Score=405.56 Aligned_cols=243 Identities=24% Similarity=0.363 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|.......+-.+...++.....+.+|++++||||||||+.|+|++++++.... ..+++++++..+.+..+||.+||+
T Consensus 240 El~~La~~fN~M~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~~---~~~~~~~~l~~~~~e~~rl~~lv~ 316 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSR---SQKELEDVLYSNLEELTRMAKMVS 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999889871899999999999853899---869999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
+||++||++.++..++.+++||++++.+++..+++.+..+++.++... ....|.+|+.+|+|+|.|||+||+||+++|
T Consensus 317 ~lL~lar~e~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NAikys~~g 394 (482)
T PRK09835 317 DMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNALRYTPEG 394 (482)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999987743588766673456999999999999999986892899827--870899879999999999999999848999
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
+.|.|++. ..++.+.|+|+|+|+|||++++++||+||||++.+.+++.+||||||||||.||++|||+|+++|. ++||
T Consensus 395 ~~i~i~~~-~~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt 472 (482)
T PRK09835 395 EAIVVRCQ-TVDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGT 472 (482)
T ss_pred CEEEEEEE-EECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCE
T ss_conf 86999999-829989999996587889899987667975189888899994648999999999982998999963-9918
Q ss_pred EEEEEECCCC
Q ss_conf 9999963577
Q gi|254780413|r 803 LIEIIFPLYD 812 (820)
Q Consensus 803 ~f~v~lP~~~ 812 (820)
+|+|+||-.+
T Consensus 473 ~f~i~lPr~~ 482 (482)
T PRK09835 473 RFVISLPRLE 482 (482)
T ss_pred EEEEEEECCC
T ss_conf 9999930789
No 21
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=100.00 E-value=0 Score=388.65 Aligned_cols=241 Identities=22% Similarity=0.351 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|..........+..+++.....+.+|++++||||||||+.|.++++++.++. + +. ..++.|...++||..||+
T Consensus 221 Ei~~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~-~---~~---~~l~~i~~e~~rl~~li~ 293 (461)
T PRK09470 221 EFRAAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQ-G---ES---KELERIETEAQRLDSMIN 293 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-C---CH---HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999998645553278999999999864044-7---85---999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
+||++||.+.+. .+..+++++++++.++++.++..+..+++.+.+..+++...|.||+.+|+||+.|||+||+||++.
T Consensus 294 ~lL~lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~- 371 (461)
T PRK09470 294 DLLVLSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT- 371 (461)
T ss_pred HHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 999997620546-555651539999999999999999975976999727875489978999999999999999974899-
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
.|.|++.... +.+.|+|+|+|+|||++++++||+||||++.+.++..+||||||||||+||++|||+|+++|.|+.||
T Consensus 372 -~i~v~~~~~~-~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~ 449 (461)
T PRK09470 372 -KIEVGFSVDK-DGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGL 449 (461)
T ss_pred -CEEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf -5899999999-99999999779998999998762797228988889999713889999999998299899997799856
Q ss_pred EEEEEECCCCCC
Q ss_conf 999996357778
Q gi|254780413|r 803 LIEIIFPLYDTS 814 (820)
Q Consensus 803 ~f~v~lP~~~~~ 814 (820)
+|+|+||++..+
T Consensus 450 ~~~i~LPl~~~~ 461 (461)
T PRK09470 450 RLTIWLPLYKRS 461 (461)
T ss_pred EEEEEEECCCCC
T ss_conf 999996588999
No 22
>PRK10337 sensor protein QseC; Provisional
Probab=100.00 E-value=0 Score=378.27 Aligned_cols=235 Identities=18% Similarity=0.241 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|....-..+.+....++.+.....+|.+++||||||||++|.+++|++...... .+.+++++..|.++.+||.+||+
T Consensus 212 El~~L~~a~N~ml~rl~~~~~~~r~F~adaAHELRTPLt~i~~~~e~~~~~~~~---~~~~~~~l~~i~~~~~rl~~lv~ 288 (446)
T PRK10337 212 EVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDD---PQARKKALLQLHSGIDRATRLVD 288 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999978887516899999999998427999---89999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
+||.+||++++.....++++||++++.+++..+.+.+..+++.|.++++...+.+.+|+..|+|++.|||.||+||+|+|
T Consensus 289 ~LL~Lar~d~~~~~~~~~~v~l~~l~~~~v~~~~~~a~~~~i~l~~~~~~~~~~~~~d~~ll~~~l~NLl~NAikytp~g 368 (446)
T PRK10337 289 QLLTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAKIDVRLTLNAHGIKRTGQPLLLSLLVRNLLDNAVRYSPQG 368 (446)
T ss_pred HHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998775446565678175299999999999999999759779996288770671689999999999999999748999
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
|.|.|.... . .|+|+|+|+|||++++++|||||||.++ +..+|+||||+|||+||++|||+|.++|.|+.|+
T Consensus 369 ~~I~v~~~~--~---~l~V~D~G~GIp~e~~~~iFeRFyR~~~---~~~~GsGLGLaIV~~I~~~hgG~i~l~~~~~GG~ 440 (446)
T PRK10337 369 SVVDVTLNA--R---NFTVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGF 440 (446)
T ss_pred CEEEEEEEC--C---EEEEEECCCCCCHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEE
T ss_conf 769999980--7---7999976999999999874279706999---9999826749999999998199899997898927
Q ss_pred EEEEEE
Q ss_conf 999996
Q gi|254780413|r 803 LIEIIF 808 (820)
Q Consensus 803 ~f~v~l 808 (820)
+|+|+|
T Consensus 441 ~~~vt~ 446 (446)
T PRK10337 441 EAKVSW 446 (446)
T ss_pred EEEEEC
T ss_conf 999969
No 23
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=0 Score=379.44 Aligned_cols=239 Identities=19% Similarity=0.296 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|..+......++...++.....+.+|+++|||||||||+.|.+.++++.+ . . +.. .+.+.+...+|..||+
T Consensus 190 Ei~~La~~FN~Ma~~l~~~~~~~r~f~a~vSHELRTPLt~i~~~lell~~-~---~--~~e---~~~l~~~i~~l~~lv~ 260 (433)
T PRK10604 190 SFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN-L---S--AAE---SQALNRDIGQLEALIE 260 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCC-C---C--HHH---HHHHHHHHHHHHHHHH
T ss_conf 59999999999999999999999999874024431689999999997049-9---8--578---9999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
+||++||++.+..++.++++|+.+++.+++..++..+..+++.+... .....+.+|+.+|+|++.||++||+||+ +
T Consensus 261 ~lL~larl~~~~~~l~~~~~dl~~~i~~~~~~~~~~~~~~~i~l~~~--~~~~~~~~D~~~l~~~l~NLl~NA~kys--~ 336 (433)
T PRK10604 261 ELLTYARLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLKTP--HQGDYGALDMRLMERVLDNLLNNALRYS--H 336 (433)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC--CCCCEEEECHHHHHHHHHHHHHHHHHCC--C
T ss_conf 99999763689787877023699999999999997655996799717--9886698789999999999999998718--9
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
|.|.|++... ++.+.|+|+|+|+|||++++++||+||||.+.|..++.+|+||||||||+||++|||+|+|+|.||+||
T Consensus 337 ~~v~v~~~~~-~~~~~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa 415 (433)
T PRK10604 337 STVETSLLLD-GDQATLIVEDDGPGIAPEERERIFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDTSELGGA 415 (433)
T ss_pred CCEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 9789999999-999999999778788989999865794528888899999613889999999998199899996699847
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999963577788
Q gi|254780413|r 803 LIEIIFPLYDTSH 815 (820)
Q Consensus 803 ~f~v~lP~~~~~~ 815 (820)
+|+|+||++.+..
T Consensus 416 ~f~i~LP~~~~~~ 428 (433)
T PRK10604 416 RFSFSWPVWHNIP 428 (433)
T ss_pred EEEEEECCCCCCC
T ss_conf 9999977999999
No 24
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00 E-value=0 Score=383.23 Aligned_cols=465 Identities=18% Similarity=0.224 Sum_probs=356.9
Q ss_pred HHHHHHHHHCCCCEEEEEC-CEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCC-HHHHHHHHHHHHHCCCEEEEE
Q ss_conf 5789999634997899709-95887206889883798447722467611220245545-135678999875058665599
Q gi|254780413|r 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS-DNNAIKPVMLYRSDRTCIAAS 397 (820)
Q Consensus 320 ~~~~~ild~lp~gv~i~~~-gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 397 (820)
..++..+|++|++|-|.+. -.|+|+|.||.++|||.+.|.++....+ +.....| +-... +....-..-|+.
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~---LSn~tTPpeVYQa----LWg~la~qkPW~ 76 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESV---LSNRTTPPEVYQA----LWGSLAEQKPWA 76 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHH----HHHHHHHCCCCC
T ss_conf 568886622880364310145699995663215586562111255401---2685887179999----998863058986
Q ss_pred EEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEE
Q ss_conf 99999973894499999963243332002333445678888999999999999999999997422043078599838721
Q gi|254780413|r 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 (820)
Q Consensus 398 ~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~ 477 (820)
.++-..++||..++ -.++..|.-+..|.-+++.|.++|+|+...-++....+...+.++++++|..++++|+.|||+.-
T Consensus 77 G~LlNRrkDg~lYL-AeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~Ld 155 (496)
T TIGR02938 77 GKLLNRRKDGELYL-AELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLD 155 (496)
T ss_pred CCEECCCCCCCHHH-HHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEC
T ss_conf 51000011653002-22020200014688158732545435788998889764678999987865410005699868816
Q ss_pred HHHHHHHHCCCHHHCCCC----CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC---EEEEEEEEEECCC
Q ss_conf 568998848960320786----443345645627789999988606984022348887638972---8999999887178
Q gi|254780413|r 478 NRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK---LLSLRIIIKKLPF 550 (820)
Q Consensus 478 N~a~~~l~G~~~~el~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 550 (820)
|..|++|.- |+.-+ .+..++.++... .+...-. ....+-+.|...-.+.|| |+.+.........
T Consensus 156 N~~yk~La~----DL~v~epa~~~l~lLre~~~e----~~~~~~~-q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~ 226 (496)
T TIGR02938 156 NLEYKKLAS----DLKVEEPAELLLKLLREELAE----DLEELEN-QEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEE 226 (496)
T ss_pred CHHHHHHHH----HCCCCCCHHHHHHHHHHHHHH----HHHHHCC-CCCEECCCEEEEECCCCCCCCCEEECCCEEEEEC
T ss_conf 776887874----214144179999985087652----7865202-1101015403541688788501020232353113
Q ss_pred C-----------CEEEEEEEEHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 8-----------7399998651444434576544668----878999999999985234531748999999999973126
Q gi|254780413|r 551 S-----------SCYSLTMHDISEWKQEKNKLSHAKK----IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 (820)
Q Consensus 551 ~-----------~~~~~v~~Dite~k~~e~el~~~~~----~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~ 615 (820)
+ ++.+.++-|||++|+.++..+-.-. +.|+...+.-|-|...-|-|..|||-|.....+|.++.-
T Consensus 227 ~~ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl~gP~NlisaA~~~L~RRlG 306 (496)
T TIGR02938 227 DSADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRLQGPLNLISAAISVLERRLG 306 (496)
T ss_pred CCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 64011561689983056636478889999999999989999899888887666888888852871078899998632058
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 87788899999999999899999999999998664318852000331799999999999999987378089997379884
Q gi|254780413|r 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 (820)
Q Consensus 616 ~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp 695 (820)
+..+|+.....|+.+..+|+--+.-.....=.|. .-.+.|||||+++++|++++-++.-..||++.+..+..||
T Consensus 307 D~AGn~a~~~~lqqa~~ag~e~~e~L~~~IP~s~------~e~~~pVNlN~~lrdvi~l~T~rLLA~GIvVdW~Pa~~LP 380 (496)
T TIGR02938 307 DDAGNDAVAALLQQALAAGREALEALEKVIPQSD------AEAVVPVNLNQVLRDVITLLTERLLAAGIVVDWQPAAVLP 380 (496)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCC
T ss_conf 3237979999999998863999997505788772------4454664277899999986105575575415165610162
Q ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCCC----EEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 6898889999999999988887188978----799999980499499999978897898886642377187347876667
Q gi|254780413|r 696 RILADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 (820)
Q Consensus 696 ~v~~D~~~l~Qvl~NLl~NAik~t~~gg----~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~ 771 (820)
+|+|-+.++|-.|-.|+.|||++|...+ ...|.+..+ +.-++++|.|+|||||++..-++|||||+||++..|
T Consensus 381 ~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~-~~li~~~i~DsGPGIP~dlr~kvFEPFFttK~~~Gr-- 457 (496)
T TIGR02938 381 AVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVE-DDLIRVEIEDSGPGIPADLRLKVFEPFFTTKASSGR-- 457 (496)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-CCEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCC--
T ss_conf 22078525789999999999998530784102310102230-856899997358798724422523673226888778--
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 888606899999999619869999788995399999635
Q gi|254780413|r 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 772 ~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
+|.|.||+.++.||-.|+|=|.|+..|-+|+.+.|.||+
T Consensus 458 ~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~~ 496 (496)
T TIGR02938 458 KHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFEV 496 (496)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
T ss_conf 423346268899975049879736888777357776239
No 25
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=370.60 Aligned_cols=228 Identities=29% Similarity=0.485 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 99999999998523453174899999999997312687788899999999999899999999999998664318852000
Q gi|254780413|r 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 (820)
Q Consensus 580 ~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~ 659 (820)
+..+.++.||+.+||||||||++|+|.++.|.... ..+..+...+.++.|.+.++++.++|++|||++||++|.+.++.
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~-~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDG-EALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999998741024672898861488864234-01593769999999999999999999987767777137864144
Q ss_pred EEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 33179999999999999998737808999737988468988899999999999888871889787999999804994999
Q gi|254780413|r 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 (820)
Q Consensus 660 ~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i 739 (820)
+++.+.++|.+++..+......+. +.++++.++|.|.+|...|.||+.|||.||+||+|++..|.|..... ..+++|
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~-~~~v~~ 810 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE-RENVVF 810 (890)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCEEEE
T ss_conf 520399999999998663047835--89955888716764788999999999987874289997699999982-456999
Q ss_pred EEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 99978897898886642377187347876667888606899999999619869999788995399999635777
Q gi|254780413|r 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 740 ~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
.|.|+|+|||++.+++||+|||+...... ..|+||||||||+||++|||+|++++.++.|++|.|.||+...
T Consensus 811 ~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 811 SVIDEGPGIPEGELERIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 99718999885678876465414888778--8876622999999999748868987769993589999406888
No 26
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=100.00 E-value=0 Score=357.38 Aligned_cols=311 Identities=22% Similarity=0.241 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCC--HHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999742204307859983872156899884896--032078644334564562778999998860698402234
Q gi|254780413|r 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 (820)
Q Consensus 450 ~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~--~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (820)
..++..++++++.+||+.+|.+|+|+.+|+++.++|+.. .++.+|++.....+... +..+...+... .+.
T Consensus 219 l~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~~~~~~~-------l~~vl~~~~~~-~d~ 290 (541)
T PRK11086 219 LFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHSWSPVSR-------LKEVLRTGTPR-RDE 290 (541)
T ss_pred HHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHHHCCCHH-------HHHHHHCCCCC-CEE
T ss_conf 9999999985300169997589879998499998743358874312551777275455-------99998448853-107
Q ss_pred EEEEECCCCCEEEEEEEEEECCCC-CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 888763897289999998871788-7399998651444434576544668878999999999985234531748999999
Q gi|254780413|r 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 (820)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~ 606 (820)
+.. ..++.+.+...+....+. .|.++++||+||.++.+++|... +...++|...+||++|||+.|.|+
T Consensus 291 e~~---~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L~~v--------~~~~e~Lra~sHE~~n~L~~I~Gl 359 (541)
T PRK11086 291 EIN---INGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRLDGV--------VNYADALRAQSHEFMNKLHVILGL 359 (541)
T ss_pred EEE---ECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999---899899999777654890689999984427899999999999--------999999876116664057999888
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 99997312687788899999999999899999999999998664318852000331799999999999999987378089
Q gi|254780413|r 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 (820)
Q Consensus 607 ~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l 686 (820)
+++-.. ++..+| |.+-.......++.+++.-+ .|+ +..++ ---..++.++++.+
T Consensus 360 l~l~~~--------d~~~~~---i~~~~~~~~~~~~~l~~~i~----------~p~-la~~L----lgk~~~a~E~gi~L 413 (541)
T PRK11086 360 LHLKSY--------DQLEDY---ILKTANNYQEEIGSLLGKIK----------SPV-IAGFL----LGKISRARELGITL 413 (541)
T ss_pred HHHCHH--------HHHHHH---HHHHHHHHHHHHHHHHHHCC----------CHH-HHHHH----HHHHHHHHHCCCEE
T ss_conf 864308--------999999---99999999999999998611----------688-89999----98899999669859
Q ss_pred EEEECCCCCEEEECHH---HHHHHHHHHHHHHHHCCC--CCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf 9973798846898889---999999999988887188--97879999998049949999997889789888664237718
Q gi|254780413|r 687 RTSFANNIPRILADLR---SVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 (820)
Q Consensus 687 ~~~~~~~lp~v~~D~~---~l~Qvl~NLl~NAik~t~--~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~ 761 (820)
.++.+..+|.+. |+. +|.||+.||+.||+||++ ++|.|.|+... .++.+.|+|+|||+|||++.+++||++||
T Consensus 414 ~i~~~~~l~~~~-~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~-~~~~l~i~V~D~G~GI~~e~~~~IFerg~ 491 (541)
T PRK11086 414 IISEDSQLPDSD-DEDQVHELITILGNLIENALEAVSNEEGGEISVSLHY-RHGWLHIEVSDDGPGIAPEEIEAIFDKGY 491 (541)
T ss_pred EEECCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCC
T ss_conf 970677677888-6466657999999999999997316899679999998-89989999997798859779988717987
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 7347876667888606899999999619869999788995399999635777
Q gi|254780413|r 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 762 ~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
++| ++||||||||||.||++|||+|+|+|+||+||+|+|+||.-..
T Consensus 492 StK------~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~~~ 537 (541)
T PRK11086 492 STK------GSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWDGK 537 (541)
T ss_pred CCC------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 418------9991103999999999859989999669993799999606876
No 27
>TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290 Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. ; GO: 0000155 two-component sensor activity, 0016775 phosphotransferase activity nitrogenous group as acceptor, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=100.00 E-value=0 Score=378.55 Aligned_cols=242 Identities=24% Similarity=0.362 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44443457654466887899999999998523453174899999999997312687788899999999999899999999
Q gi|254780413|r 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 (820)
Q Consensus 562 te~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li 641 (820)
.|.+....+.-.+-..+|.+-+..++|-|.++|||||||+..+|-+|+.+.+.-. .++|++.+..=.+.-+||.+||
T Consensus 238 ~EL~~l~~~FNaML~RLEd~f~rLs~FSaDlAHElRTPltNL~~~tQVaLS~~R~---~~eY~e~l~snlEEl~RL~rMv 314 (483)
T TIGR01386 238 AELRELAQSFNAMLDRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSRPRS---GEEYREVLESNLEELERLSRMV 314 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHEEECCCCC---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6689999999999888999999997317145666401254456650020056889---8899999986189999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEECHHHHHH-HHHHHHHHHHHHCC--EEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 9999986643188520003317999999-99999999987378--08999737988468988899999999999888871
Q gi|254780413|r 642 NDLLDISKIESGKMNLHFEPVSLDEAVS-EAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 (820)
Q Consensus 642 ~dlLd~srieaG~~~l~~~~vdl~~lv~-~~~~~~~~~a~~~~--i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~ 718 (820)
+|+|-++|.+.|++.+++..+||++=+. .+++.+++.|++++ |.|+++..| ..|.||+..++.+|-|||+||+||
T Consensus 315 ~DMLFLAraD~~~~~~~~~~ldL~ae~~l~~~~~fE~lAee~~Piv~l~v~G~P--~~~~gD~~lfrRA~sNLLsNA~rh 392 (483)
T TIGR01386 315 EDMLFLARADNGRLALEREELDLAAELALKVAEYFEPLAEERGPIVSLRVEGEP--AEVRGDALLFRRALSNLLSNALRH 392 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 899989985234567778751278888788887742027678866899983242--056024788899999999999860
Q ss_pred CCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCC-CCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 889787999999804994999999788978988866423771873478766-6788860689999999961986999978
Q gi|254780413|r 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFST 797 (820)
Q Consensus 719 t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~-~~~GtGLGLai~k~iVe~hgG~i~v~S~ 797 (820)
||+||.|.|++. ++.+.++|.|+++|.||||++++||||.|||+|++... +..||||||||||+||++|||++.|+|.
T Consensus 393 tp~g~~I~v~~~-~~~d~~~~~v~N~G~~Ip~e~L~rLFdRFYR~D~aR~~G~~~g~GLGLAIV~SI~~~HGG~~~aeS~ 471 (483)
T TIGR01386 393 TPAGSTIDVRVE-RRADEVRVSVENTGDGIPPEHLSRLFDRFYRVDPARSNGSQEGTGLGLAIVRSIMEAHGGRAEAESE 471 (483)
T ss_pred CCCCCEEEEEEE-ECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899885899996-1477568998358799985235655530026763332766456760489999999823986899864
Q ss_pred CCCCEEEEEEEC
Q ss_conf 899539999963
Q gi|254780413|r 798 PAKGTLIEIIFP 809 (820)
Q Consensus 798 pG~Gt~f~v~lP 809 (820)
++.=|+|.+.||
T Consensus 472 ~~~~t~F~l~fp 483 (483)
T TIGR01386 472 ADGKTRFKLRFP 483 (483)
T ss_pred CCCEEEEEEECC
T ss_conf 892489876339
No 28
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=100.00 E-value=0 Score=364.70 Aligned_cols=232 Identities=18% Similarity=0.288 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|....-+.+.+...+++.+...+.+|++++||||||||++|.|++|+|.+.. . .. .+.+.+..++|..+|+
T Consensus 121 El~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~--~---~~----~~~~~~~i~rl~~li~ 191 (355)
T PRK10755 121 EIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTH--H---ID----VAPLIARLDQMMHSVS 191 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--C---CC----HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999757774038999999999973757--5---31----9999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEEC-HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999986643188520003317-9999999999999998737808999737988468988899999999999888871889
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVS-LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vd-l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~ 721 (820)
+||+++|++.+......+.++ +.+++..+.+.+.+.+..++..+.+..++.-..|.||+.+|+||+.||++||+||+|+
T Consensus 192 ~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~ 271 (355)
T PRK10755 192 QLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPE 271 (355)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999858886434544213259999999999999999975995999658877189968999999999999989974899
Q ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf 78799999980499499999978897898886642377187347876667888606899999999619869999788-99
Q gi|254780413|r 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AK 800 (820)
Q Consensus 722 gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p-G~ 800 (820)
|+.|.|... . ++.+.|+|+|+|+|||++.+++||+||||.+. +++|+||||||||+||++|||+|+++|.| |.
T Consensus 272 g~~I~I~l~-~-~~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~gg 345 (355)
T PRK10755 272 GSNITIKLQ-E-DGGAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERS 345 (355)
T ss_pred CCEEEEEEE-E-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 976999999-7-79889999987999897999885588613899----99987589999999999919989999879898
Q ss_pred CEEEEEEEC
Q ss_conf 539999963
Q gi|254780413|r 801 GTLIEIIFP 809 (820)
Q Consensus 801 Gt~f~v~lP 809 (820)
||+|+|+||
T Consensus 346 Gt~~~v~LP 354 (355)
T PRK10755 346 GTRAWVWLK 354 (355)
T ss_pred EEEEEEEEC
T ss_conf 789999947
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=100.00 E-value=0 Score=356.06 Aligned_cols=228 Identities=21% Similarity=0.329 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|-.+......++.+..++....+.+|+|+|||||||||+.|.+++++|.+. ++ .+.+.|.+..++|.++|+
T Consensus 209 Ev~~l~~aFN~M~~~l~~~~~~r~~~la~vSHeLRTPLT~irl~~e~l~~~------~~---~~~~~i~~~i~~m~~li~ 279 (437)
T PRK09467 209 EVRSVTRAFNQMSAGIKQLEDDRALLMAGVSHDLRTPLTRIRLATEMMSEE------DG---YLAESINKDIEECNAIIE 279 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC------HH---HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999753444327899999998746753------18---999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
++|+|+|.+. ....+++|+++++.+++.... ..+..+.+.+++..+.|.+|+.+|+|++.||+.||+||+ +
T Consensus 280 ~~L~~~r~~~---~~~~~~~dl~~l~~~~~~~~~----~~~~~i~~~~~~~~~~v~~d~~~l~r~l~NLi~NA~ky~--~ 350 (437)
T PRK09467 280 QFIDYLRTDQ---EMPMEMADLNALLGEVIAAES----GYEREIETALYPGPIEVPMNPIAIKRALANLVVNAARYG--N 350 (437)
T ss_pred HHHHHHHHCC---CCCCCCCCHHHHHHHHHHHHH----CCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHCC--C
T ss_conf 9999986215---566751159999999999875----549838996288764898579999999999999887607--9
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
|.|.|++... ++.+.|+|.|+|+|||++++++||+||+|.+.+. ..+|+||||||||+||++|||+|.++|.|+.|+
T Consensus 351 ~~i~V~~~~~-~~~~~i~V~D~GpGI~~e~l~~if~pF~R~d~sR--~~~GsGLGLaIv~~Iv~~HgG~i~l~~~~~gGl 427 (437)
T PRK09467 351 GWIKVSSGTE-GNRAWFQVEDNGPGIPEEQIKHLFQPFTRGDSAR--GSSGTGLGLAIVKRIVDQHQGKVELGNREEGGL 427 (437)
T ss_pred CEEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC--CCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf 8399999986-8999999997599999899987616852188899--999772889999999998699899997799945
Q ss_pred EEEEEECCC
Q ss_conf 999996357
Q gi|254780413|r 803 LIEIIFPLY 811 (820)
Q Consensus 803 ~f~v~lP~~ 811 (820)
+|+|+||+-
T Consensus 428 ~~~i~lPl~ 436 (437)
T PRK09467 428 SARAWLPLP 436 (437)
T ss_pred EEEEEECCC
T ss_conf 999997157
No 30
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-45 Score=350.00 Aligned_cols=336 Identities=20% Similarity=0.291 Sum_probs=267.1
Q ss_pred HHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECC
Q ss_conf 99997422043078599838721568998848960320786443345645627789999988606984022348887638
Q gi|254780413|r 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 (820)
Q Consensus 455 ~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (820)
..++++.+..|+++|.+|.|.|+|.+++.+||.+...+.+.++..++...+. ....+......+....-..-.+. .
T Consensus 10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~gs~--ll~ll~q~~~~~~~~~~~~v~l~--~ 85 (363)
T COG3852 10 GAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFGSL--LLSLLDQVLERGQPVTEYEVTLV--I 85 (363)
T ss_pred HHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCH--HHHHHHHHHHHCCCCCCCEEEEE--E
T ss_conf 7687455785699827782896088899999977888824877887177728--89999899983588510102442--0
Q ss_pred CCCEEEEEEEEEECCCCCE-EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 9728999999887178873-999986514444345765446688789999999999852345317489999999999731
Q gi|254780413|r 535 EEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 (820)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~-~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~ 613 (820)
.|.-..+.....++....| ++..+.-+....+..+++.+. .++++...+..+++|||+|||.+|.|.+|+|...
T Consensus 86 ~g~~~~v~~~v~~v~~~~G~vlle~~~~~~~~ridre~~q~-----a~~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~ 160 (363)
T COG3852 86 LGRSHIVDLTVAPVPEEPGSVLLEFHPRDMQRRLDREQTQH-----AQQRAVKGLVRGLAHEIKNPLGGIRGAAQLLERA 160 (363)
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 78652378998622689974899953257776766999988-----8888999999877887228531014499999745
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 26877888999999999998999999999999986643188520003317999999999999999873780899973798
Q gi|254780413|r 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 (820)
Q Consensus 614 ~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~ 693 (820)
. .++..++|.+.|.+.++|+..||+-|.-||- +......+++++++++.|..+.+..+ ..+|+|.-+|+|.
T Consensus 161 l----pd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~VLerV~~lv~~e~-~~~i~l~rdYDPS 231 (363)
T COG3852 161 L----PDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEVLERVRALVEAEF-ADNVRLIRDYDPS 231 (363)
T ss_pred C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCC
T ss_conf 8----9867789999999999999999999875087----89855354319999999999985436-7755885027998
Q ss_pred CCEEEECHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEECC----CC-----EEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 846898889999999999988887188----9787999999804----99-----4999999788978988866423771
Q gi|254780413|r 694 IPRILADLRSVKQIALNILSNAIHFTP----SGGQIIISTTHTS----NE-----EVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 694 lp~v~~D~~~l~Qvl~NLl~NAik~t~----~gg~v~v~~~~~~----~~-----~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
+|.|.+|+.||.|||+||+.||+++.. .+|+|+++|+..- .| .+.+.|.|||+|||++.++++|.||
T Consensus 232 LP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~ 311 (363)
T COG3852 232 LPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPM 311 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCC
T ss_conf 85323698999999999999999971677877856999722425887167424663116986189999867864300230
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 8734787666788860689999999961986999978899539999963577788
Q gi|254780413|r 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 761 ~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
-++ |.+||||||+|+.+||..|||-|.++|.||. |+|.|.||+++.+.
T Consensus 312 Vs~------r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~~~~~ 359 (363)
T COG3852 312 VSG------REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIRKEAA 359 (363)
T ss_pred CCC------CCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEEECCCCCC
T ss_conf 206------8898661489999989852978987426894-58999863354545
No 31
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=2.8e-45 Score=348.94 Aligned_cols=239 Identities=17% Similarity=0.237 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
|.......+-+....++++-...-+|++++||||||||++|.|++++|..... ..+ +....+.++.+||.++|+
T Consensus 244 Ei~~La~~fN~ml~rl~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~~---~~~---~~~~~~le~i~Rl~~li~ 317 (484)
T PRK10815 244 ELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEKM---SVS---DAEPVMLEQISRISQQIG 317 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCC---CHH---HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999854436434569999999999746998---878---999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
++|++++++++...+..+.+++..++++++..+...+..+++.+.++.++++ .+.||+..|.|++.|||.||+||++++
T Consensus 318 ~lL~~a~~~~~~~~~~~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~~ 396 (484)
T PRK10815 318 YYLHRASMRGEGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLEF 396 (484)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999987038986302555669999999999999999964977999648760-795578999999999999999728886
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
|.|++... ++.+.|.|.|+|+|||++.+++||++|+|.+.+ ..|+||||||||.||++|||+|+++|.|+.||
T Consensus 397 --v~I~~~~~-~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~----r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~ 469 (484)
T PRK10815 397 --VEISARQT-DEHLHIVVEDDGPGIPESKRELIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVASESPLGGA 469 (484)
T ss_pred --EEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf --79999996-999999999739999989998624688779999----99857679999999998899899995699924
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999963577788
Q gi|254780413|r 803 LIEIIFPLYDTSH 815 (820)
Q Consensus 803 ~f~v~lP~~~~~~ 815 (820)
+|+|+||-++++.
T Consensus 470 ~f~I~F~~~~~~p 482 (484)
T PRK10815 470 RMEVIFGRQHSTP 482 (484)
T ss_pred EEEEEECCCCCCC
T ss_conf 8999973877899
No 32
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-43 Score=333.43 Aligned_cols=339 Identities=21% Similarity=0.320 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999742204307859983872156899884896032078644334564562778999998860698
Q gi|254780413|r 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 (820)
Q Consensus 442 ~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (820)
.+..+++++.+.+.++++..+.||+.+|.+|++..+|++++++||.+-+++.|+++....+ ...+.+......+.
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap-----~~~~vf~~~~a~~~ 434 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIAP-----ELEEVFAEAGAAAR 434 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHHHHHH-----HHHHHHHHHHHHCC
T ss_conf 8788899999889999815850389974787077626017888468706764402664213-----78999997654038
Q ss_pred CCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 40223488876389728999999887178873999986514444345765446688789999999999852345317489
Q gi|254780413|r 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 (820)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~ 601 (820)
+..-..-.+.+.++.+.+.+..+.-.-..+.+|+.++-|||....++ .+.+.++.+-.++|||+|||+
T Consensus 435 ~~~~~ev~~~r~g~~rtl~Vq~t~~~~d~~~gyVvt~DDITdLV~AQ------------Rs~AW~dVArRIAHEIKNPLT 502 (712)
T COG5000 435 TDKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDITDLVIAQ------------RSAAWGDVARRIAHEIKNPLT 502 (712)
T ss_pred CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHH------------HHHHHHHHHHHHHHHHCCCCC
T ss_conf 77420100014787415666753214446885699963508999999------------987899999999887249986
Q ss_pred HHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf 9999999997312687788--89999999999989999999999999866431885200033179999999999999998
Q gi|254780413|r 602 AIIGFSEVIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 (820)
Q Consensus 602 ~I~g~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a 679 (820)
+|.-.+|-|..+.-..+.. +...++.+.|.++...+.++||+.-+|+| ...++++..||++++.+++.+.+..
T Consensus 503 PIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afAR----mP~p~~e~~dL~~ll~e~~~L~e~~- 577 (712)
T COG5000 503 PIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFAR----MPAPKLEKSDLRALLKEVSFLYEIG- 577 (712)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHHHHHHCC-
T ss_conf 22002899998837412348999999999999999999999999998714----8998777422999999999999626-
Q ss_pred HHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCC-------CCEEEEEEEECCCCEEEEEEEECCCCCCHHH
Q ss_conf 737808999737988468988899999999999888871889-------7879999998049949999997889789888
Q gi|254780413|r 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-------GGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 (820)
Q Consensus 680 ~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~-------gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~ 752 (820)
...+.+..++..+.....+|+.+|+|+|.||+.||.++... ++.|+++. ...+|.+++.|.|||.|.|.+.
T Consensus 578 -~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~-~~~~g~i~v~V~DNGkG~p~e~ 655 (712)
T COG5000 578 -NDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL-DDADGRIVVDVIDNGKGFPREN 655 (712)
T ss_pred -CCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-ECCCCEEEEEEECCCCCCCHHH
T ss_conf -87769975318986253248999999999998719987531013467764389998-4479849999810898799678
Q ss_pred HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CCCEEEEEEECC
Q ss_conf 6642377187347876667888606899999999619869999788-995399999635
Q gi|254780413|r 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 (820)
Q Consensus 753 ~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p-G~Gt~f~v~lP~ 810 (820)
+.|+||||-|++ -+||||||+|||+|||.|||+|.....| -.|.++.|.||.
T Consensus 656 r~r~~EPYvTtr------~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 656 RHRALEPYVTTR------EKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred HHHHCCCCEECC------CCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 643236714216------56666239999999996388277247899997679998365
No 33
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-45 Score=348.53 Aligned_cols=235 Identities=23% Similarity=0.414 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65446688789999999999852345317489999999999731268778889999999999989999999999999866
Q gi|254780413|r 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 (820)
Q Consensus 570 el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sr 649 (820)
++.+.++.+|++|.....|.+.+||+|++||+.|.+|+++|.+++.+ ..++++.++++.|.+...+|.+||+|+|.||+
T Consensus 509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~-~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSD-ALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989988765158999999986104667999999999766634366-65758899999999999999999997742312
Q ss_pred HHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-CEEEEE
Q ss_conf 4318852000331799999999999999987378089997379884689888999999999998888718897-879999
Q gi|254780413|r 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIIS 728 (820)
Q Consensus 650 ieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g-g~v~v~ 728 (820)
+. ..++.++++|++++|++++..+..+....++.++.. + +|.|.+|+.+|.||+.||+.|||||..++ ..|.|+
T Consensus 588 l~--~~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~ 662 (750)
T COG4251 588 LG--LTEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEIS 662 (750)
T ss_pred HC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEC--C-CCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEE
T ss_conf 05--545777775267899999973453112565247862--5-644640888999999998765521078889815885
Q ss_pred EEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99804994999999788978988866423771873478766678886068999999996198699997889953999996
Q gi|254780413|r 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 (820)
Q Consensus 729 ~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~l 808 (820)
+... +..|++.|+|||+||.+++.+|||.+|.+.++ ..+|.||||||+|||+|+|.|+|+|||||.||+|+||.++|
T Consensus 663 ~~r~-ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~l 739 (750)
T COG4251 663 AERQ-EDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTL 739 (750)
T ss_pred EECC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC--HHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEE
T ss_conf 3325-87307985478777698999888998870375--65514777338999999998484588860478741689984
Q ss_pred CCCCC
Q ss_conf 35777
Q gi|254780413|r 809 PLYDT 813 (820)
Q Consensus 809 P~~~~ 813 (820)
|....
T Consensus 740 p~~~~ 744 (750)
T COG4251 740 PVGGE 744 (750)
T ss_pred ECCCC
T ss_conf 05886
No 34
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=2e-43 Score=335.93 Aligned_cols=240 Identities=22% Similarity=0.327 Sum_probs=212.0
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHHHHHHHHH---HHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6514444345765446688789999--99999985234531748999999999---973126877888999999999998
Q gi|254780413|r 559 HDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV---IKNQRFGPLGNPRYIEYANYIDRS 633 (820)
Q Consensus 559 ~Dite~k~~e~el~~~~~~~e~~~~--~k~~fla~vsHElrtPL~~I~g~~~~---l~~~~~~~~~~~~~~~~l~~i~~~ 633 (820)
..|.++.++|.+|++++..+-++++ +.+++.+.+|||||+||++|.+|++. |++. | ..+...+.+..|..=
T Consensus 356 ~EIaer~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLer--g--r~e~a~~Nl~~I~~L 431 (603)
T COG4191 356 AEIAEREQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLER--G--RTEEARENLERISAL 431 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHH
T ss_conf 899988878999998789999877789988888887887437089998677789999875--8--867777679999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 99999999999998664318852000331799999999999999987378089997379884689888999999999998
Q gi|254780413|r 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 (820)
Q Consensus 634 ~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~ 713 (820)
.+||..|..+|..|+| |-.-..+++.+.++|++++.+++++....++.++..+++..|+|++++.||+|||.|||+
T Consensus 432 teRma~It~~Lk~FAr----k~~~a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~ 507 (603)
T COG4191 432 TERMAAITAHLKSFAR----KSRDAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQ 507 (603)
T ss_pred HHHHHHHHHHHHHHHC----CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHH
T ss_conf 9999889999999833----676666776579999999999887641367626504898775564132209999999999
Q ss_pred HHHHCCC--CCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8887188--97879999998049949999997889789888664237718734787666788860689999999961986
Q gi|254780413|r 714 NAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 (820)
Q Consensus 714 NAik~t~--~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~ 791 (820)
||++++. +.++|.|++. +.++.|+|+|+||||||+|+.+.++|+||||+|+ .++|.||||+||+.|++.+||+
T Consensus 508 NALDA~~~~~~~~i~i~~~-~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~~~GLGLGLaIS~~i~~d~GGs 582 (603)
T COG4191 508 NALDAMAGQEDRRLSIRAQ-REGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----VGKGLGLGLAISQNIARDLGGS 582 (603)
T ss_pred HHHHHHCCCCCCEEEEEEE-ECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHHCCE
T ss_conf 8999845887871699987-1598699998269999897899861377503676----6677560289899899981880
Q ss_pred EEEEEECCCCEEEEEEECCC
Q ss_conf 99997889953999996357
Q gi|254780413|r 792 FYIFSTPAKGTLIEIIFPLY 811 (820)
Q Consensus 792 i~v~S~pG~Gt~f~v~lP~~ 811 (820)
|.|.+.|+.|+.|+|.||..
T Consensus 583 L~v~n~~~~Ga~F~i~L~~a 602 (603)
T COG4191 583 LEVANHPEGGASFTIELRRA 602 (603)
T ss_pred EEEECCCCCCEEEEEEEECC
T ss_conf 79402788844899996157
No 35
>PRK09776 putative sensor protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=268.66 Aligned_cols=363 Identities=13% Similarity=0.076 Sum_probs=269.2
Q ss_pred CEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCC--CCCCCEEEEECCCCCCCEE
Q ss_conf 81059999799909996678996628997897499688820401688238999998637--9616716886147988379
Q gi|254780413|r 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYV 159 (820)
Q Consensus 82 ~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~--~~~~~~~~~~~~~g~~~~~ 159 (820)
+.. ++.++.+|||.+||+++|+|+||+++|+++++|.|+.||.|++.+....+.+..| ++++-+..+.++||+. +
T Consensus 314 aiG-mAlV~~dGr~l~VN~alc~mlGYs~~ELl~ltf~diThPdDl~~dl~~~~~LlaGei~~y~lEKRyirkDG~~--v 390 (1116)
T PRK09776 314 AIG-MALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEKRYYNRDGDV--V 390 (1116)
T ss_pred CCC-EEEECCCCCEEEECHHHHHHHCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCE--E
T ss_conf 664-6998689818981699998849899998529898816962177789999999769966454112467369979--9
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 99986300156887363055668985221037799999863243344543014320023344210144455310011000
Q gi|254780413|r 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 (820)
Q Consensus 160 ~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (820)
|+.++..+++|.+|+...| .+++.|++++|+.++..+++.+
T Consensus 391 W~~ltvSlvRd~~G~p~~f--I~~v~DIterK~aE~~lr~l~e------------------------------------- 431 (1116)
T PRK09776 391 WALLAVSLVRDTDGTPLYF--IAQIEDINELKRTEQVNERLME------------------------------------- 431 (1116)
T ss_pred EEEEEEEEEECCCCCEEEE--EEEEEECHHHHHHHHHHHHHHH-------------------------------------
T ss_conf 9998999997699984489--9999733377999999999999-------------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 13344101361012222000210152011100000002440233355542101101222332100011013456545556
Q gi|254780413|r 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 (820)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (820)
T Consensus 432 -------------------------------------------------------------------------------- 431 (1116)
T PRK09776 432 -------------------------------------------------------------------------------- 431 (1116)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCEEEEEC-CEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 5789999634997899709-958872068898837984477224676112202455451356789998750586655999
Q gi|254780413|r 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 (820)
Q Consensus 320 ~~~~~ild~lp~gv~i~~~-gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 398 (820)
++...++..+.|+|.++. ...+++|....+++|+... +.. ....+ .....+++................++..
T Consensus 432 -rl~la~ea~~iGiwe~d~~~~~i~~~~r~~~l~g~~~~--~~~--~~~~w-~~~ihPdD~~~v~~~~~~~l~~~~~~d~ 505 (1116)
T PRK09776 432 -RITLANEAGGIGIWEWDLKPNIISWDKRMFELYEIPPH--IKP--NWQVW-YACLHPEDRQRVEKEIRDALQGRSPFKL 505 (1116)
T ss_pred -HHHHHHHHCCCCEEEEECCCCCEECCHHHHHHHCCCCC--CCC--CHHHH-HHHCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf -99999862476635520566502113789998488822--266--88999-8723915689999999999715887560
Q ss_pred EEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEH
Q ss_conf 99999738944999999632433320023334456788889999999999999999999974220430785998387215
Q gi|254780413|r 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 (820)
Q Consensus 399 ~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N 478 (820)
+++-++.+|...|+ ........+..+...+..|+..|||++|..+++|.+++++++.++++++++|+.+|.+|+|+++|
T Consensus 506 E~Rl~~~dG~~r~i-~~~a~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~~l~si~d~vi~tD~~~ri~~~N 584 (1116)
T PRK09776 506 EFRIVVPDGEIRHI-RALANRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHITLDSIGEAVVCTDAAMKVTFMN 584 (1116)
T ss_pred EEEEECCCCCEEEE-EEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEC
T ss_conf 46788479978999-86214898689988988731323207789999999999999999834022489973788678886
Q ss_pred HHHHHHHCCCHHHCCCCCCCCCCC---CCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCC---
Q ss_conf 689988489603207864433456---45627789999988606984022348887638972899999988717887---
Q gi|254780413|r 479 RAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 (820)
Q Consensus 479 ~a~~~l~G~~~~el~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 552 (820)
+++++++||+.+++.|+++...+. +++............................++|..+++..++.++.+..
T Consensus 585 paae~~tG~~~~e~~G~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~G~~~~v~~s~~pi~~~~g~~ 664 (1116)
T PRK09776 585 PVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMENPVEICLADTSRSYLEQDVVLHSRSGGSYDVQYSIAPLSTLDGEN 664 (1116)
T ss_pred HHHHHHHCCCHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCE
T ss_conf 99999829887998499878970036644211112199999740787331235368826996899997304513477855
Q ss_pred -EEEEEEEEHHHHHHHHHHHHH
Q ss_conf -399998651444434576544
Q gi|254780413|r 553 -CYSLTMHDISEWKQEKNKLSH 573 (820)
Q Consensus 553 -~~~~v~~Dite~k~~e~el~~ 573 (820)
|++.+++|||++|++++++..
T Consensus 665 ~g~V~v~~Dit~~k~~~~~l~~ 686 (1116)
T PRK09776 665 IGSVLVFQDVTESRAMLRQLSY 686 (1116)
T ss_pred EEEEEEECCHHHHHHHHHHHHH
T ss_conf 4479852012299999999987
No 36
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265 Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=100.00 E-value=5.3e-35 Score=274.25 Aligned_cols=203 Identities=19% Similarity=0.335 Sum_probs=170.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEECHHH
Q ss_conf 99852345317489999999999731268778889999999999989999999999999866431885-20003317999
Q gi|254780413|r 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM-NLHFEPVSLDE 666 (820)
Q Consensus 588 fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~-~l~~~~vdl~~ 666 (820)
+-+=|-|||+|-..-..-....-.+-+..| +=|.+.+++|..+.+||.+++.+|. .++. +-+.+.||+++
T Consensus 489 ~SaFvVHDLKNLvaQLSL~l~NA~~Hk~NP---eFq~DmL~Tv~~~v~RM~~ll~qLr------~~~~p~~~~~~~~l~~ 559 (696)
T TIGR02916 489 MSAFVVHDLKNLVAQLSLLLRNAERHKDNP---EFQDDMLETVESAVNRMKKLLAQLR------EKGLPEEEKKTVDLVD 559 (696)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH------CCCCCCHHHHEEHHHH
T ss_conf 034211025899999999999887417896---6899999989999999999999973------0689740564103899
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEE-CCC--CCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 999999999999873780899973-798--84689888999999999998888718897879999998049949999997
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSF-ANN--IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~-~~~--lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~D 743 (820)
|++++++.-+.+ ..+++ +++ +.+ + .|++|+.||+.|+.||+-||+++|++.|.|.|++..++++.+.|+|.|
T Consensus 560 L~~~~~~~k~~q--~p~~e--~~~~~~~~rl-~~~a~~erl~rV~gHL~QNAlEAT~~~G~V~~~~~~~~~~~a~i~i~D 634 (696)
T TIGR02916 560 LLRRVIASKRAQ--QPRPE--VSIEDTDFRL-SVRADRERLERVLGHLVQNALEATPEEGRVKIRVERECGGAAVIEIED 634 (696)
T ss_pred HHHHHHHHHHHC--CCCEE--EEECCCCEEE-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 999999998631--89448--9971754178-887528889999999999888604999628999874188822799986
Q ss_pred CCCCCCHHH-HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 889789888-664237718734787666788860689999999961986999978899539999963
Q gi|254780413|r 744 TGVGMTNYE-LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 (820)
Q Consensus 744 tG~GI~~~~-~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP 809 (820)
||+||+++. ++|+|+||.|||+ ..|.|+|.+=||++||.|||+|+|+|+||+||+||+.||
T Consensus 635 ~G~GM~~~FiR~rLF~PF~tTK~-----~aGMGIG~YE~~~yv~e~GG~i~V~S~pG~Gt~ftl~LP 696 (696)
T TIGR02916 635 SGCGMSEAFIRERLFKPFDTTKG-----NAGMGIGVYECRQYVEELGGRIEVESTPGKGTIFTLVLP 696 (696)
T ss_pred CCCCCCHHHHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECC
T ss_conf 57899858998407899754456-----678720189999999983890588863588548887449
No 37
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-34 Score=264.98 Aligned_cols=220 Identities=39% Similarity=0.634 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q ss_conf 99999985234531748999999999973126877888999999999998999999999999986643188-52000331
Q gi|254780413|r 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK-MNLHFEPV 662 (820)
Q Consensus 584 ~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~-~~l~~~~v 662 (820)
.+..|++.++||+||||+.+.++++++... .. ....+++..+....+++..+++++++++|++.+. .....+.+
T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG---LL--DPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELV 188 (336)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999888589799999999997414---65--2599999999999999999999999999764457442234645
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 79999999999999998737808999737988468988899999999999888871889787999999804994999999
Q gi|254780413|r 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 (820)
Q Consensus 663 dl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~ 742 (820)
++..++.+++..+...+....+.+....+ ..+.+.+|+.+|.|||.||++||+||++ ++.|.|.+...++ .+.++|.
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~-~i~i~V~ 265 (336)
T COG0642 189 DLAELLEEVVRLLAPLAQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE-QVTISVE 265 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCC-EEEEEEE
T ss_conf 59999999999999876634848998237-6607860788999999999998998668-9859999996387-7999998
Q ss_pred ECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 7889789888664237718734787666788860689999999961986999978899539999963577788
Q gi|254780413|r 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 743 DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
|+|+||+++.++++|+||++++... .||||||+|||++++.|||.|.++|.||.||+|+|+||......
T Consensus 266 D~G~Gi~~~~~~~if~~~~~~~~~~----~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~~~~ 334 (336)
T COG0642 266 DTGPGIPEEELERIFEPFFRTDKSR----SGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAPAAA 334 (336)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCC
T ss_conf 0789979889998818863479998----98863299999999987998999507999779999984776555
No 38
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-30 Score=241.50 Aligned_cols=315 Identities=21% Similarity=0.287 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHH--HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999974220430785998387215689988489603--207864433456456277899999886069840223
Q gi|254780413|r 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 (820)
Q Consensus 449 ~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~--el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (820)
.-.++..++++++-+||+.+|..|.|+.+|.++++++|+... +.+|+++.+.+.|... +..+...+.+. .+
T Consensus 212 ~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~~~------l~~vl~~~~~~-~~ 284 (537)
T COG3290 212 TLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDSD------LPEVLETGKPQ-HD 284 (537)
T ss_pred HHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC------CHHHHHCCCCC-CC
T ss_conf 999999999987636289987898576112889998465676756446610376156367------57787507763-11
Q ss_pred EEEEEECCCCCEEEEEEEEEECCCC-CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 4888763897289999998871788-739999865144443457654466887899999999998523453174899999
Q gi|254780413|r 527 KITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 (820)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g 605 (820)
.+.. -.|.++-++..+.+..+. .|+++.+||-|+-++.-++|.+.+..++. |-..+||..|=|+.|.|
T Consensus 285 ~e~~---~ng~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~ya~a--------LRaq~HEfmNkLhtI~G 353 (537)
T COG3290 285 EEIR---INGRLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQYAEA--------LRAQSHEFMNKLHTILG 353 (537)
T ss_pred HHHH---CCCEEEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_conf 3441---477599998523788897768999876377899999999989999999--------98852888888999987
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 99999731268778889999999999989999999999999866431885200033179999999999999998737808
Q gi|254780413|r 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 (820)
Q Consensus 606 ~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~ 685 (820)
..++= +|.+..+.|.+.++.-..+++.+.-- + . +.++...+---..+|.+.++.
T Consensus 354 Llql~-----------~yd~a~~~I~~~~~~qq~~~~~l~~~--i---------~----~~~lAg~LlgK~~rArElgv~ 407 (537)
T COG3290 354 LLQLG-----------EYDDALDYIQQESEEQQELIDSLSEK--I---------K----DPVLAGFLLGKISRARELGVS 407 (537)
T ss_pred HHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHH--C---------C----CHHHHHHHHHHHHHHHHCCCE
T ss_conf 88505-----------37899999999876404568999985--1---------2----088899988689999972965
Q ss_pred EEEEECCCCCE--EEECHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 99973798846--898889999999999988887188---9787999999804994999999788978988866423771
Q gi|254780413|r 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTP---SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 686 l~~~~~~~lp~--v~~D~~~l~Qvl~NLl~NAik~t~---~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
+..+....+|. -.-+..-+--|+-||+.||..++- ++.+|.+++..+. +.+.++|+||||||||+..++||+.=
T Consensus 408 l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~-~~lvieV~D~G~GI~~~~~~~iFe~G 486 (537)
T COG3290 408 LIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRG-DELVIEVADTGPGIPPEVRDKIFEKG 486 (537)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC-CEEEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 99757986788987667678999999988778888515578967999998369-87999995799998968877787348
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 87347876667888606899999999619869999788995399999635777
Q gi|254780413|r 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 761 ~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
+.+|+ .+|.|.||++||++|+.+||.|+++|+++.||+|+|++|-..+
T Consensus 487 ~Stk~-----~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~ 534 (537)
T COG3290 487 VSTKN-----TGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKE 534 (537)
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 41467-----7887612889999998749669995078981499998888766
No 39
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.98 E-value=7.3e-30 Score=236.62 Aligned_cols=246 Identities=19% Similarity=0.300 Sum_probs=201.7
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6514444345765446688789999--99999985234531748999999999973126877888999999999998999
Q gi|254780413|r 559 HDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 (820)
Q Consensus 559 ~Dite~k~~e~el~~~~~~~e~~~~--~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~ 636 (820)
..|.+|+++|..|+.++.++-.+.. ..++-+-.+||||+.|||++..|.--.. ........+...+|++.|..-.+|
T Consensus 423 ~EveeR~e~ea~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~-~A~e~~~s~qa~~~L~kie~L~eR 501 (673)
T COG4192 423 AEVEERQEAEAHLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSAR-LALEEAPSAQAATSLDKIENLTER 501 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987789999998999877888889885575688999999878-888517458899899988779999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf 99999999998664318852000331799999999999999987378089997379884689888999999999998888
Q gi|254780413|r 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 (820)
Q Consensus 637 l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAi 716 (820)
|..|||.|.-|+|-.+++ -...||+|+.++..+.++++.+..++.+.+.. |-+.|+|+||..+|+|||.||+.||+
T Consensus 502 ~~~Iv~sLRqF~Rk~s~~--~~lqpV~L~~~v~~AweLl~~khk~rQ~~Li~--ptD~~~V~gd~v~ieQVlvNl~~Nal 577 (673)
T COG4192 502 MGKIVNSLRQFARKNSSD--ESLQPVRLNSVVEQAWELLQTKHKRRQIKLIN--PTDDLMVMGDAVSIEQVLVNLIVNAL 577 (673)
T ss_pred HHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf 999999999997525777--87641109999999999998542000244237--76530000015649999999999888
Q ss_pred HCCCCC-CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 718897-8799999980499499999978897898886642377187347876667888606899999999619869999
Q gi|254780413|r 717 HFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 (820)
Q Consensus 717 k~t~~g-g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~ 795 (820)
+++..- ..|.|.+--...+..++.|.|||+|-|-+..+++|.||.+.| .-|.||||+||.+|+|.|.|++.+-
T Consensus 578 dA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK------~vgLGlGLSIsqSlmeqmqG~l~lA 651 (673)
T COG4192 578 DASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK------EVGLGLGLSISQSLMEQMQGRLALA 651 (673)
T ss_pred HHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCC------CCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 6641578627998642764215899844899984567788607766431------0055532567899999842744486
Q ss_pred EECCCCEEEEEEECCCCCCC
Q ss_conf 78899539999963577788
Q gi|254780413|r 796 STPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 796 S~pG~Gt~f~v~lP~~~~~~ 815 (820)
|.--+|.++-..|-+.+.-+
T Consensus 652 StLt~nA~ViL~f~v~~~~~ 671 (673)
T COG4192 652 STLTKNAMVILEFQVDEKYR 671 (673)
T ss_pred HHCCCCCEEEEEEEECCHHC
T ss_conf 55135748999984131201
No 40
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.95 E-value=2.7e-27 Score=217.78 Aligned_cols=111 Identities=33% Similarity=0.582 Sum_probs=102.3
Q ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 88899999999999888871889787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL 778 (820)
+|+.+|+||+.|||+||+||++.++.|.|++... ++.+.|+|+|||+|||+++++++|+||++++.. ....+|+||||
T Consensus 1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL 78 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD-GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR-SRKIGGTGLGL 78 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCEEEEEEEECCCCCCHHHHHHCCCCCEECCCC-CCCCCCCCHHH
T ss_conf 9889999999999999999677997899999983-999999999889973989996426994777999-98879766489
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 999999996198699997889953999996357
Q gi|254780413|r 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 (820)
Q Consensus 779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~ 811 (820)
+|||.++++|||+|+++|.+++||+|+|+||+.
T Consensus 79 ~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~ 111 (111)
T smart00387 79 SIVKKLVELHGGEISVESEPGGGTTFTITLPLE 111 (111)
T ss_pred HHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf 999999998799899996599818999999819
No 41
>pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Probab=99.95 E-value=9.3e-27 Score=213.89 Aligned_cols=111 Identities=30% Similarity=0.542 Sum_probs=102.5
Q ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 88899999999999888871889787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL 778 (820)
+|+.+|.||+.||++||+||+++++.|.|++... ++.+.|+|+|+|+|||+++++++|+||+|++.. .+..+|+||||
T Consensus 1 ~d~~~l~~i~~nll~NAik~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL 78 (111)
T pfam02518 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERD-GGRLRITVEDNGIGIPPEDLPKIFEPFFRTDKD-SRKVGGTGLGL 78 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHCCCCEECCCC-CCCCCCCCHHH
T ss_conf 9889999999999999999779997599999995-999999999899995989998874991777999-97779776479
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 999999996198699997889953999996357
Q gi|254780413|r 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 (820)
Q Consensus 779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~ 811 (820)
+|||.+++.|||+|+++|.++.||+|+|+||+.
T Consensus 79 ~i~~~~~~~~~g~i~~~s~~~~Gt~~~i~lp~~ 111 (111)
T pfam02518 79 SIVRKLVELHGGTITVESEPGGGTTFTFTLPLE 111 (111)
T ss_pred HHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEC
T ss_conf 999999998799899996599838999999709
No 42
>PRK13559 hypothetical protein; Provisional
Probab=99.95 E-value=3.2e-23 Score=188.04 Aligned_cols=303 Identities=16% Similarity=0.179 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHCCHHEEECC---CCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999742204307859---98387215689988489603207864433456456277899999886069840223
Q gi|254780413|r 450 EVMQLCSILEATSDGIAIINR---EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 (820)
Q Consensus 450 ~~~~L~~ile~~~~gI~~~D~---~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (820)
+...|...++.+..+|++.|+ |.-|+|+|++|++|+||+.+|++|+++.-+..|+..+.....++.....+... .
T Consensus 43 ~~~~~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lTGYs~~EviGrncrfLqGp~t~~~~v~~ir~ai~~~~~~--~ 120 (363)
T PRK13559 43 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAGTDPAAVAKIRAAIAAERVV--V 120 (363)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHHCCCHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCE--E
T ss_conf 31479999974774389968999999889988799976398979984999241089999989999999999839946--9
Q ss_pred EEEEEECCCCCEEEEEEEEEECCCCCE----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 488876389728999999887178873----9999865144443457654466887899999999998523453174899
Q gi|254780413|r 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 (820)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~ 602 (820)
.+++.+.|+|..+|...++.++.++.| ++++..|||++|+.+.+.. .+..++.-|.|=.+|-|..
T Consensus 121 ~el~nyrKDGs~fwn~l~isPV~D~~G~v~~fig~q~DvTd~~~~~a~e~-----------~~~~LlrEl~HRVKN~Lav 189 (363)
T PRK13559 121 VELLNYRKDGSPFWNALHLGPIYDEDGKLLYFFGSQWDVTDIRAVRALEA-----------HERRLAREVDHRSKNVFAV 189 (363)
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_conf 99999826998247768988879899979999999985155420455899-----------9999999988876619999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf 99999999731268778889999999999989999999--999-999866431885200033179999999999999998
Q gi|254780413|r 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI--VND-LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 (820)
Q Consensus 603 I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~l--i~d-lLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a 679 (820)
|.+.+.+ ..+. . ...++.+.+.. |+..| +.+ ||. . -..+.++|.++|...+.-+.+
T Consensus 190 V~Si~rl-q~R~---~---~~~~~~~~l~~---RI~ALa~aH~~Ll~--~-------~~~~~v~l~~ll~~~l~~~~~-- 248 (363)
T PRK13559 190 VDSIVRL-TGRA---D---DASLYAAAIQE---RVQALARAHETLLD--E-------RGWETVEVEELIRAQVAPYAP-- 248 (363)
T ss_pred HHHHHHH-HCCC---C---CHHHHHHHHHH---HHHHHHHHHHHHHC--C-------CCCCCEEHHHHHHHHHHHCCC--
T ss_conf 9999996-5347---9---84999999999---99999999999865--7-------776623299999999985078--
Q ss_pred HHCCEEEEEEECCCCCEEEEC---HHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEE-CCCCEEEEEEEECCCCCCHHH
Q ss_conf 737808999737988468988---8999999999998888718---897879999998-049949999997889789888
Q gi|254780413|r 680 NEKRILIRTSFANNIPRILAD---LRSVKQIALNILSNAIHFT---PSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYE 752 (820)
Q Consensus 680 ~~~~i~l~~~~~~~lp~v~~D---~~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~-~~~~~v~i~V~DtG~GI~~~~ 752 (820)
.+..+.++. |.|..+ ...|-=||--|++||+||. .++|+|.|++.. .+++.+.|.++|+|.+.++.
T Consensus 249 --~~~ri~~~g----p~v~l~~~~A~~L~LilhELaTNA~KyGals~~~G~V~V~w~~~~~~~~l~l~W~E~Ggp~v~~- 321 (363)
T PRK13559 249 --RGTRVAFEG----PGIRLGAASVQPLGLVLHELAVNAIKHGALSADAGRISISWRPSREGGGLVLDWQEQGGPTPPK- 321 (363)
T ss_pred --CCCEEEEEC----CCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC-
T ss_conf --886699988----9756868887789999999987088735667899779999998178987999997789999989-
Q ss_pred HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 664237718734787666788860689999999-961986999978899539999963577
Q gi|254780413|r 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLYD 812 (820)
Q Consensus 753 ~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iV-e~hgG~i~v~S~pG~Gt~f~v~lP~~~ 812 (820)
-..+|+|.-|...+| ...||++..+=.|. |+.++|.+|+.+
T Consensus 322 ------------------p~~~GFGs~LI~~~v~~qL~G~v~~~~~~~-Gl~~~i~~Plrq 363 (363)
T PRK13559 322 ------------------LQKRGFGTVIISAMVESQLKGQIEKDWADD-GLLARIEIPVRQ 363 (363)
T ss_pred ------------------CCCCCCHHHHHHHHHHHHCCCEEEEEECCC-EEEEEEEEECCC
T ss_conf ------------------999985699999998987598799998799-089999996689
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.94 E-value=2.2e-24 Score=196.49 Aligned_cols=412 Identities=14% Similarity=0.112 Sum_probs=256.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCC
Q ss_conf 222332100011013456545556578999963499789970-9958872068898837984477224676112202455
Q gi|254780413|r 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 (820)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~ 374 (820)
...-..+++.+.+++++.....++.++..++|++|.+||..+ .|+++++|.+|++.+||...+.++.. ..+ +....
T Consensus 180 ~~~~g~~~DITERKraE~rl~~ql~flq~LlDnipdpvF~kD~~G~ylgcN~afe~~~G~~re~i~G~t-i~D--l~p~e 256 (807)
T PRK13560 180 DQVDGFAEDITERKRAEERIDEALHFLQQLLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMS-IHD--FAPAQ 256 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECHHHHHHCCCCHHHHCCCC-CCC--CCCHH
T ss_conf 555567787677778999999999999999854887469977995189620999988099999956861-012--78155
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCEEE--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4513567899987505866559999999973894499--99996324333200233344567888899999999999999
Q gi|254780413|r 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL--AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 (820)
Q Consensus 375 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~g~~~~--~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~ 452 (820)
..+........... .+...-++. . +...+++.+ .+.+...+..+..+.+.+.++...|||+||+++++|+++++
T Consensus 257 ~ad~y~~~d~~~l~-~~~~~~~E~--~-v~~~DG~~~~~~v~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEe 332 (807)
T PRK13560 257 PADDYQEADAAKFD-ADGSQIIEA--E-FQNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKED 332 (807)
T ss_pred HHHHHHHHHHHHHC-CCCCEEEEE--E-EECCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 68999875088641-887557552--0-3779985757999986223338788665688887615677889999999899
Q ss_pred HHHHHHHHHCCHHEEECCCCEEEEE-HHHHHHHHCCCHHHCCCCCCCCCC---------------CCCCHHHHHHH--HH
Q ss_conf 9999997422043078599838721-568998848960320786443345---------------64562778999--99
Q gi|254780413|r 453 QLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFL---------------EQNTPSVMNHY--LT 514 (820)
Q Consensus 453 ~L~~ile~~~~gI~~~D~~G~i~~~-N~a~~~l~G~~~~el~g~~~~~~~---------------~~~~~~~~~~~--~~ 514 (820)
+|+.++|+++.+|+.+|++|+|++. |+++++|+||+.+|++|.+++..- .|+.++...+. +.
T Consensus 333 r~R~i~E~a~~gI~~~D~~g~i~~~~n~aae~m~G~s~eE~lg~~lw~~~pe~~~e~~~~~~~~~~pdgr~~~~~~c~~a 412 (807)
T PRK13560 333 MLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPELNEEFWCGDFQEWYPDGRPMAFDACPMA 412 (807)
T ss_pred HHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHHHH
T ss_conf 99999873665347862676157612616787626876886077433568344133313406551666563431012366
Q ss_pred HHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCC----EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_conf 88606984022348887638972899999988717887----3999986514444345765446688789999-------
Q gi|254780413|r 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------- 583 (820)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~Dite~k~~e~el~~~~~~~e~~~~------- 583 (820)
.....+.... ..+.+...++|+.+++.....++.+.. |.+++++||||||++|++|++.+..++...-
T Consensus 413 ~~~r~g~~~~-g~E~~~~RkDGt~~~~~~~~~pL~D~dG~~~gal~i~~DITERKqAEeaLr~sn~iLEnSp~il~~~~~ 491 (807)
T PRK13560 413 KTIKGGKIFD-GQEVLIEREDDGPADCSAYAEPLHDADGNIIGAIALLVDITERKQVEEQLLLANLIVENSPLVLFRWKA 491 (807)
T ss_pred HHHHCCCCCC-CCEEEEEECCCCEEEEEECCEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7761378778-863799906996577886130225678885331100112427788999999988887529740478751
Q ss_pred -----------H-------HHHHHH-------HH-HHHHCCHHHHHHHHHHHHHHC------------------------
Q ss_conf -----------9-------999998-------52-345317489999999999731------------------------
Q gi|254780413|r 584 -----------H-------KSDFLA-------RV-SHEIRTPLTAIIGFSEVIKNQ------------------------ 613 (820)
Q Consensus 584 -----------~-------k~~fla-------~v-sHElrtPL~~I~g~~~~l~~~------------------------ 613 (820)
. ..+|++ .+ .+++++..+.+..+..--.+.
T Consensus 492 ~~gw~ve~vs~~v~~fGYt~eE~isg~~~~~~lvhPeDr~~v~~~l~~~~~~G~~~f~~eyRi~~kdGsvrWI~~~~~~i 571 (807)
T PRK13560 492 EEGWPVELVSKNITQFGYEPDEFISGKRMFAAIIHPADLEQVAAEVAEFAAQGVDRFEQEYRILGKGGAVCWIDDQSAAE 571 (807)
T ss_pred CCCCCEEEECCHHHHHCCCHHHHCCCCEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEE
T ss_conf 57862375232145508887884242310120579788888999999874157552201688876999689997013561
Q ss_pred --CCCCC-------CC--HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH
Q ss_conf --26877-------88--89-------------99999999998999999999999986643188520003317999999
Q gi|254780413|r 614 --RFGPL-------GN--PR-------------YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 (820)
Q Consensus 614 --~~~~~-------~~--~~-------------~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~ 669 (820)
..|.. .| ++ ..-+++.|+.-.+.=+++|..||.+..- +.. .=.....+.
T Consensus 572 rDe~G~V~~~~giv~DIT~~k~aee~l~asL~EKE~LLkEIHHRVKNNLQiIsSLL~LQar---~~~----d~ear~aL~ 644 (807)
T PRK13560 572 RDEEGQISHFEGIVIDISERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAE---KLH----DEEAKCAFA 644 (807)
T ss_pred CCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC----CHHHHHHHH
T ss_conf 1788875444446743528888999999999988999998776752039999999998876---559----999999999
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEE
Q ss_conf 9999999998737808999737988468988899999999999888871-889787999999
Q gi|254780413|r 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTT 730 (820)
Q Consensus 670 ~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~-t~~gg~v~v~~~ 730 (820)
++..-++..|.-+..- .-..++-.| -+.+.+.+|+.+-... ....+.|.+.+.
T Consensus 645 esq~RI~SmAlVHe~L---y~S~dl~~I-----d~~~yi~~L~~~L~~s~~~~~~~I~l~vd 698 (807)
T PRK13560 645 ESQDRICAMALAHEKL---YQSEDLADI-----DFLDYIESLTAHLKNSFAIDFGRIDCKID 698 (807)
T ss_pred HHHHHHHHHHHHHHHH---HCCCCCCEE-----CHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9999999999999998---569997657-----29999999999999973789863899997
No 44
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.93 E-value=7e-21 Score=170.87 Aligned_cols=331 Identities=15% Similarity=0.215 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHHCCHHEEECCC-CEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-
Q ss_conf 999999999999997422043078599-838721568998848960320786443345645627789999988606984-
Q gi|254780413|r 445 RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR- 522 (820)
Q Consensus 445 ~~L~~~~~~L~~ile~~~~gI~~~D~~-G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 522 (820)
.+|+..+.--.-|+...|.|+.++|-+ .+.+..|.-|..++- +-+......+... .+|..
T Consensus 336 ~eL~~~~~l~~eIIs~lP~GlLVYdF~sN~~i~SNkIAdhLLP----------------hl~LqkI~~MA~q--H~GvIQ 397 (881)
T PRK10618 336 GELRILRAINEEIVSLLPLGLLVYDFSSNRTVISNKIADHLLP----------------HLNLQKITTMAEQ--HQGVIQ 397 (881)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHCC----------------CCCHHHHHHHHHH--HCCEEE
T ss_conf 8999998868889854875069997468957730267886557----------------6678999999997--378689
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 02234888763897289999998871788739999865144443457654466887899999999998523453174899
Q gi|254780413|r 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 (820)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~ 602 (820)
...+.++. .+.+.-..... .-++-+++|--...-....|.+|+++.++-..++..|+.+|.+||+.|+..
T Consensus 398 ~tInNevY---------EIr~~rSq~~p-~T~LFii~DqDkEvLvnKkLq~AqreYeKN~qaRk~~l~Ni~~el~~Pl~~ 467 (881)
T PRK10618 398 ATINNELY---------EIRMFRSQVAP-RTQLFIIRDQDREVLVNKKLQQAQREYEKNQQARRAFLQNIGDELKEPVQS 467 (881)
T ss_pred EEECCEEE---------EEEEEECCCCC-CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98836067---------88854225787-537999975758999889999999999866999999999999998778999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999731268778889999999999989999999999999866431885200033179999999999999998737
Q gi|254780413|r 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 (820)
Q Consensus 603 I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~ 682 (820)
+.-.+.-|... ...+.+..+...++++.++|+++--+.++|++.-....++|.+.+++++++...-|..++|
T Consensus 468 l~~~~~~l~~~--------~~~~~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~e~Lp~i~~K 539 (881)
T PRK10618 468 LAELAAQLNAP--------ESQQLLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVPEVLPAIKRK 539 (881)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999986252--------4467999999999999999988999988860567656771049999999999876898742
Q ss_pred CEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC--CEEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf 8089997379884-689888999999999998888718897879999998049--9499999978897898886642377
Q gi|254780413|r 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKP 759 (820)
Q Consensus 683 ~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~--~~v~i~V~DtG~GI~~~~~~~iFep 759 (820)
|+.+-...-...- ...||+.-|+.|+.=|+.-||--|.=| .|++++..+++ +.+.|+|.|||.|++.++++.+--|
T Consensus 540 GL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~~G-KItl~v~~~~~~~~~l~i~i~DTG~Gls~~El~Nl~~P 618 (881)
T PRK10618 540 GLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQYG-KITLEVDQDESSEERLTFRILDTGEGVSIHEIDNLHFP 618 (881)
T ss_pred CCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHCCCC
T ss_conf 70333234798899704789999999999998881114452-59999825877786389999547888788888553797
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 187347876667888606899999999619869999788995399999635777
Q gi|254780413|r 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 760 F~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
|-- ++..++-+.|.||-..+|+.+...|||++.+.|.++-||.++|+||+...
T Consensus 619 Fl~-~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp~~~~ 671 (881)
T PRK10618 619 FLN-QTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLKMLPA 671 (881)
T ss_pred CCC-CHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCC
T ss_conf 768-31221113788729999999999848967884156776647998426765
No 45
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.92 E-value=1.1e-24 Score=198.83 Aligned_cols=102 Identities=37% Similarity=0.648 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 999999999888871889-7879999998049949999997889789888664237718734787666788860689999
Q gi|254780413|r 704 VKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 (820)
Q Consensus 704 l~Qvl~NLl~NAik~t~~-gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k 782 (820)
|+||+.||++||+||+++ .+.|.|++. ..++.+.|+|+|||+|||++.++++|+||++... ....+|+||||+|||
T Consensus 1 l~~vl~nLl~NAik~~~~~~~~I~i~~~-~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~~g~GlGL~i~~ 77 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVE-RDGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR--SRKGGGTGLGLSIVK 77 (103)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEEE-ECCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC--CCCCCCCCCHHHHHH
T ss_conf 9699999999999867899948999999-8399999999977994088999760697501788--877898650599999
Q ss_pred HHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99996198699997889953999996
Q gi|254780413|r 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 (820)
Q Consensus 783 ~iVe~hgG~i~v~S~pG~Gt~f~v~l 808 (820)
.++++|||+|+++|.+|+||+|+|+|
T Consensus 78 ~i~~~~~G~i~i~s~~~~Gt~~~i~l 103 (103)
T cd00075 78 KLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred HHHHHCCCEEEEEECCCCCEEEEEEC
T ss_conf 99998899899996599919999989
No 46
>KOG0519 consensus
Probab=99.91 E-value=2.3e-25 Score=203.73 Aligned_cols=239 Identities=26% Similarity=0.295 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 457654466887899999999--998523453174899999999997312687788899999999999899999999999
Q gi|254780413|r 567 EKNKLSHAKKIAEKESSHKSD--FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 (820)
Q Consensus 567 ~e~el~~~~~~~e~~~~~k~~--fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dl 644 (820)
...++.+.....+.+.-.+++ |++++|||||+||++ | +.....++..+..++.|.+.++.++.....++|++
T Consensus 201 ~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~----~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i 274 (786)
T KOG0519 201 TLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--G----MLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDI 274 (786)
T ss_pred HHHHHHHHHCCCCCHHCCCCCHHCCCCCCCEEECCCCC--C----CCCEEECCCCCHHHHHHHCCCHHHHHCHHHHHHHH
T ss_conf 55212566512530002742011134456324434445--6----64122034421568987430012200001377776
Q ss_pred HHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCE-EEECHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9986643188520003317999999999999999873780899973798846-898889999999999988887188978
Q gi|254780413|r 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 (820)
Q Consensus 645 Ld~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~-v~~D~~~l~Qvl~NLl~NAik~t~~gg 723 (820)
+|.+++++|++++.-.+|++..++..++..+.+.+..+++.+-..+++++|. +.+|+.+++||+.|+++||||||..|.
T Consensus 275 ~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~ 354 (786)
T KOG0519 275 LDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGH 354 (786)
T ss_pred HHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 40113532355403223452666677787766655136734652078777642035610110003332014435444662
Q ss_pred EEEEEEEECC--------------------------------C---------------CEEEEEEEECCCCCCHHHHHH-
Q ss_conf 7999999804--------------------------------9---------------949999997889789888664-
Q gi|254780413|r 724 QIIISTTHTS--------------------------------N---------------EEVILRVRDTGVGMTNYELEK- 755 (820)
Q Consensus 724 ~v~v~~~~~~--------------------------------~---------------~~v~i~V~DtG~GI~~~~~~~- 755 (820)
|.++..... + ..-.+.+.|+|+||+......
T Consensus 355 -i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 433 (786)
T KOG0519 355 -LEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSN 433 (786)
T ss_pred -EEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHH
T ss_conf -2466651211004678997545776535155667888741331242204212235766520223666406850233046
Q ss_pred HCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 237718734787666788860689999999961986999978899539999963577
Q gi|254780413|r 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 (820)
Q Consensus 756 iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~ 812 (820)
+|.+|-|...+.++.++|||+|+.+|+.+|+.++|.|.+.|.+..|++|++.+++..
T Consensus 434 ~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~ 490 (786)
T KOG0519 434 VFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLT 490 (786)
T ss_pred HHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 555451466100345687645332223288998867432110034752223312356
No 47
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=99.87 E-value=2.3e-19 Score=159.73 Aligned_cols=236 Identities=9% Similarity=0.005 Sum_probs=129.2
Q ss_pred CCCCCC--CCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH--HHHHHHHHCCC----CCC
Q ss_conf 843557--7898105999979990999667899662899789749968882040168823--89999986379----616
Q gi|254780413|r 73 TFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQN----TWY 144 (820)
Q Consensus 73 ~~~~~~--~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~--~~i~~~l~~~~----~~~ 144 (820)
+++|+. ..-|.. |+.+|.+|+++++||+|++++||+++|++|+++.++.+. ++.+. ..+...+..+. .+.
T Consensus 11 ~~~fr~~lE~s~~G-IviiD~~GrIv~~N~aa~~l~GYs~eEllG~~~~~L~p~-d~~~~~~~~l~~~~~~g~~~~~g~~ 88 (799)
T PRK11359 11 DGIFFPALEQNMMG-AVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPR-DLRPAHPEYIRHNREGGKARVEGMS 88 (799)
T ss_pred HHHHHHHHHHCCCE-EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCC-CCCHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 79999999618854-999969990998718999987929999859988992785-3331239999987742655445640
Q ss_pred CEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCC
Q ss_conf 71688614798837999986300156887363055668985221037799999863243344543014-32002334421
Q gi|254780413|r 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYD 223 (820)
Q Consensus 145 ~~~~~~~~~g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~~ 223 (820)
.+....++||+. +|++++..|+ +.+|.+. | .++++|++++.+.++..+.+ ....+... ..+.++....-
T Consensus 89 ~E~~~~RKDGs~--~~velsvs~i-~~~g~i~-~--l~ivrDITee~a~~e~~r~l----~~~ld~~~~~I~i~D~~g~i 158 (799)
T PRK11359 89 RELQLEKKDGSK--IWTRFALSKV-SAEGKVY-Y--LALVRDASVEMAQKEQTRQL----IIAVDHLDRPVIVLDPERHI 158 (799)
T ss_pred EEEEEECCCCCE--EEEEEEEEEE-CCCCCEE-E--EEEEEECCHHHHHHHHHHHH----HHHHHCCCCEEEEECCCCCE
T ss_conf 489998588889--9999999776-4799289-9--99999768999999999999----99986268729999189878
Q ss_pred CCCCCCCCCCCCC-HHCCCCCC--CCCCCCHHHH-HHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 0144455310011-00013344--1013610122-220002101520111000000024402333555421011012223
Q gi|254780413|r 224 IFSQQSPPPHLRM-KNKVSSLT--EYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 (820)
Q Consensus 224 ~~~~~~~~~~~~~-~~~~~~l~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (820)
...+......... .++..... .....+.... .................+......++...|......++.+..+..
T Consensus 159 ~~vN~a~~el~Gy~~eEl~G~~~~~ll~~pe~~~~~~~~~~~~l~~~~~~~~E~~~~~kdG~~~wv~~s~~pi~d~~g~~ 238 (799)
T PRK11359 159 VQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHL 238 (799)
T ss_pred EEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCE
T ss_conf 99877899985998789748988998348788479999999998648973058999826997999998988998488988
Q ss_pred HHHHCCCCCHHHHHHHHHHHH
Q ss_conf 321000110134565455565
Q gi|254780413|r 300 FEYLSHRNHPSLSAYFDEGEN 320 (820)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~ 320 (820)
........+++.+++.++.+.
T Consensus 239 ~~~v~i~~DITErr~~~~le~ 259 (799)
T PRK11359 239 QNLVMTFSDITEERQIRQLEG 259 (799)
T ss_pred EEEEEEEEECCHHHHHHHHHH
T ss_conf 899999973158889999998
No 48
>PRK09776 putative sensor protein; Provisional
Probab=99.87 E-value=1.8e-19 Score=160.55 Aligned_cols=266 Identities=11% Similarity=-0.032 Sum_probs=195.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 1013456545556578999963499789970-995887206889883798447722467611220245545135678999
Q gi|254780413|r 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 (820)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~ 385 (820)
.....++...+++.+++.+++..++|+.+.. .|+++++|+++|+++||...+.+ ...+.+ +.++.+.. ......
T Consensus 291 ~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlGYs~~ELl-~ltf~d-iThPdDl~---~dl~~~ 365 (1116)
T PRK09776 291 AFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELR-GLTFQQ-LTWPEDLN---KDLQQV 365 (1116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHH-HCCHHH-HCCCCCHH---HHHHHH
T ss_conf 9998888877679999999874666469986898189816999988498999985-298988-16962177---789999
Q ss_pred HHHHCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 87505866559999999973894499999963243332002333445678888999999999999999999997422043
Q gi|254780413|r 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 (820)
Q Consensus 386 ~~~~~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI 465 (820)
.....|..-.+..+-+-+++||...|. .+.....++..+....+++.+.||+++|++|++++++.++++.+.++...||
T Consensus 366 ~~LlaGei~~y~lEKRyirkDG~~vW~-~ltvSlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iGi 444 (1116)
T PRK09776 366 EKLLSGEINSYSMEKRYYNRDGDVVWA-LLAVSLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIGI 444 (1116)
T ss_pred HHHHCCCCCCCCCEEEEECCCCCEEEE-EEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999769966454112467369979999-9899999769998448999997333779999999999999999986247663
Q ss_pred EEECCCCEEEEEHHHHHHHHCCCHHHC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf 078599838721568998848960320-7864433456456277899999886069840223488876389728999999
Q gi|254780413|r 466 AIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 (820)
Q Consensus 466 ~~~D~~G~i~~~N~a~~~l~G~~~~el-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (820)
|-+|.....++||..+.+++|++.+.- ....+....+|++...+...+.....+..+...+..+ +.++|.+.++...
T Consensus 445 we~d~~~~~i~~~~r~~~l~g~~~~~~~~~~~w~~~ihPdD~~~v~~~~~~~l~~~~~~d~E~Rl--~~~dG~~r~i~~~ 522 (1116)
T PRK09776 445 WEWDLKPNIISWDKRMFELYEIPPHIKPNWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRI--VVPDGEIRHIRAL 522 (1116)
T ss_pred EEEECCCCCEECCHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEE--ECCCCCEEEEEEE
T ss_conf 55205665021137899984888222668899987239156899999999997158875604678--8479978999862
Q ss_pred E--EECCCCC--EEEEEEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--8717887--3999986514444345765446688789
Q gi|254780413|r 545 I--KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 (820)
Q Consensus 545 ~--~~~~~~~--~~~~v~~Dite~k~~e~el~~~~~~~e~ 580 (820)
. ....++. +++++..|||++|+++++|.+.++++..
T Consensus 523 a~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~ 562 (1116)
T PRK09776 523 ANRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHI 562 (1116)
T ss_pred EEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 1489868998898873132320778999999999999999
No 49
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.87 E-value=2.1e-18 Score=152.76 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=142.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 8523453174899999999997----312687788899999999999899999999999998664318852000331799
Q gi|254780413|r 590 ARVSHEIRTPLTAIIGFSEVIK----NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 (820)
Q Consensus 590 a~vsHElrtPL~~I~g~~~~l~----~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~ 665 (820)
+.|+|||..+|+-.++|..+-. +........++..+.+..+.+.......-+..||.--|. .....+|.
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl-------~l~~~~L~ 438 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRL-------TIQEANLG 438 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHH
T ss_conf 89999844126657899999999999874225653889999999999999999999999998322-------67756879
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHH---HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 99999999999998737808999737988468988899---999999999888871889787999999804994999999
Q gi|254780413|r 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS---VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 (820)
Q Consensus 666 ~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~---l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~ 742 (820)
..++..++.++.+ .++.+++++ .+|...-|+.+ +-||+.+.|+|++||+. ++.|.|++...+++.+.++|+
T Consensus 439 ~AL~~~~~~~~~q---~~~~i~l~~--~l~~~~l~~~~~i~llrIvqEALtN~~KHA~-A~~V~V~~~~~~~~~v~l~V~ 512 (568)
T PRK10935 439 SALEEMLDQLRNQ---TSAKITLDC--RLPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPDGEVTVSIR 512 (568)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCEEEEEEE
T ss_conf 9999999999751---194699970--6887778888999999999999999998089-987999999748987999997
Q ss_pred ECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 788978988866423771873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 743 DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
|||+||++.. ..+.++||.|.+.-++..||++.++|.||.||+|+++||..++.
T Consensus 513 DnG~Gf~~~~------------------~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~~~~ 566 (568)
T PRK10935 513 DDGVGIGELK------------------EPEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQQEP 566 (568)
T ss_pred ECCCCCCCCC------------------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 7994789878------------------88998575999999996699899997799966999985898889
No 50
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.80 E-value=7e-17 Score=141.57 Aligned_cols=166 Identities=20% Similarity=0.285 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEECHHH---HHHH
Q ss_conf 8999999999999986643188520003317999999999999999873--7808999737988468988899---9999
Q gi|254780413|r 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRS---VKQI 707 (820)
Q Consensus 633 ~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~--~~i~l~~~~~~~lp~v~~D~~~---l~Qv 707 (820)
+...+.++++||-+-- ++..-|.+..+....-.+++-.+.. |.|.|.+. .. .+..|..- |.--
T Consensus 314 ~~~~l~r~~~dLq~~v--------m~~RMvP~~~lf~r~~R~VRdlar~~gK~V~L~i~--G~--dtelDr~Ile~L~dP 381 (662)
T PRK10547 314 SMGQLQRNARDLQESV--------MSIRMMPMEYVFSRFPRLVRDLAGKLGKQVELTLV--GS--STELDKSLIERIIDP 381 (662)
T ss_pred HHHHHHHHHHHHHHHH--------HHHCCEEHHHHHHHHHHHHHHHHHHHCCEEEEEEE--CC--CEEEHHHHHHHHHHH
T ss_conf 9999999999999999--------98625218998888789999999986982599996--68--677719999988879
Q ss_pred HHHHHHHHHHCC------------CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHH---------------------H
Q ss_conf 999998888718------------8978799999980499499999978897898886---------------------6
Q gi|254780413|r 708 ALNILSNAIHFT------------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL---------------------E 754 (820)
Q Consensus 708 l~NLl~NAik~t------------~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~---------------------~ 754 (820)
|+.||.||+.|. |+-|+|++++. ..+++|.|+|+|.|.||+.+.+ .
T Consensus 382 L~HLlRNAvDHGIE~peeR~a~GKp~~G~I~l~a~-~~g~~v~I~v~DDGrGiD~e~Ir~kAv~kGL~~~e~lsd~e~~~ 460 (662)
T PRK10547 382 LTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAE-HQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDDEVGM 460 (662)
T ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEE-ECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99998742430489988998759997279999999-85999999998189998999999999984999853389999999
Q ss_pred HHCCC-CEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 42377-187347876667888606899999999619869999788995399999635777
Q gi|254780413|r 755 KAMKP-FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 755 ~iFep-F~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
-||.| |+|.+.- + ..-|-|.||-+||.-|+.+||+|.|+|+||+||+|++.||+.-+
T Consensus 461 LIF~PGFSTa~~V-t-~lSGRGVGmDVV~~~v~~l~G~v~v~S~~G~GT~F~l~lPlTla 518 (662)
T PRK10547 461 LIFAPGFSTAEQV-T-DVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLTLA 518 (662)
T ss_pred HHHCCCCCCCCCC-C-CCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCHHH
T ss_conf 9717998623223-5-68886646899999999829989999608980799997887899
No 51
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=99.78 E-value=8.9e-16 Score=133.50 Aligned_cols=240 Identities=14% Similarity=0.121 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEE-ECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCC--
Q ss_conf 555657899996349978997-09958872068898837984477224676112202455451356789998750586--
Q gi|254780413|r 316 DEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT-- 392 (820)
Q Consensus 316 ~~~~~~~~~ild~lp~gv~i~-~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~-- 392 (820)
..++..++..++++|+||++. ..|+++++|+++++++||...+.++.. +..++..+ ....... ........+.
T Consensus 8 ~~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~GYs~eEllG~~--~~~L~p~d-~~~~~~~-~l~~~~~~g~~~ 83 (799)
T PRK11359 8 NAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNN--IDMLIPRD-LRPAHPE-YIRHNREGGKAR 83 (799)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCC-CCHHHHH-HHHHHHHCCCCC
T ss_conf 4547999999961885499996999099871899998792999985998--89927853-3312399-999877426554
Q ss_pred EEEEEEEEEEEEECCCEEEEE-EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCC
Q ss_conf 655999999997389449999-9963243332002333445678888999999999999999999997422043078599
Q gi|254780413|r 393 CIAASARLHTIQWNRENSLAM-TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 (820)
Q Consensus 393 ~~~~~~~~~~i~~~g~~~~~l-~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~ 471 (820)
......++...+++|...++. .+.+. +..+. ..+..+..|+|+++ +++++.+++..++++++++|+++|.+
T Consensus 84 ~~g~~~E~~~~RKDGs~~~velsvs~i---~~~g~-i~~l~ivrDITee~----a~~e~~r~l~~~ld~~~~~I~i~D~~ 155 (799)
T PRK11359 84 VEGMSRELQLEKKDGSKIWTRFALSKV---SAEGK-VYYLALVRDASVEM----AQKEQTRQLIIAVDHLDRPVIVLDPE 155 (799)
T ss_pred CCCCEEEEEEECCCCCEEEEEEEEEEE---CCCCC-EEEEEEEEECCHHH----HHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 456404899985888899999999776---47992-89999999768999----99999999999986268729999189
Q ss_pred CEEEEEHHHHHHHHCCCHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf 838721568998848960320786443345-6456277899999886069840223488876389728999999887178
Q gi|254780413|r 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 (820)
Q Consensus 472 G~i~~~N~a~~~l~G~~~~el~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (820)
|+|+++|+++++++||+++|+.|+.+..++ .|+........+......+. .+..+...+.++|..+|+..+..++.+
T Consensus 156 g~i~~vN~a~~el~Gy~~eEl~G~~~~~ll~~pe~~~~~~~~~~~~l~~~~--~~~~E~~~~~kdG~~~wv~~s~~pi~d 233 (799)
T PRK11359 156 RHIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTA--RDQDEFLLLTRTGEKIWIKASISPVYD 233 (799)
T ss_pred CCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf 878998778999859987897489889983487884799999999986489--730589998269979999989889984
Q ss_pred CC----EEEEEEEEHHHHHHHHH
Q ss_conf 87----39999865144443457
Q gi|254780413|r 551 SS----CYSLTMHDISEWKQEKN 569 (820)
Q Consensus 551 ~~----~~~~v~~Dite~k~~e~ 569 (820)
.. +++++++|||++|+.++
T Consensus 234 ~~g~~~~~v~i~~DITErr~~~~ 256 (799)
T PRK11359 234 VLAHLQNLVMTFSDITEERQIRQ 256 (799)
T ss_pred CCCCEEEEEEEEEECCHHHHHHH
T ss_conf 88988899999973158889999
No 52
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.73 E-value=3.9e-15 Score=128.76 Aligned_cols=169 Identities=21% Similarity=0.341 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEECHHHHH
Q ss_conf 999998999999999999986643188520003317999999999999999873--780899973798846898889999
Q gi|254780413|r 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVK 705 (820)
Q Consensus 628 ~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~--~~i~l~~~~~~~lp~v~~D~~~l~ 705 (820)
+........+.+++.+|-+--. +..-+.+..++..--.+++-.+.+ |.|.|.+.-. .+..|..-|.
T Consensus 364 ~el~~~~~~l~~~~~~LQd~vm--------~~RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~----~telDksIlE 431 (716)
T COG0643 364 EELDEALRQLSRLTTDLQDEVM--------KIRMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGE----DTELDKSILE 431 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHCEEHHHHHHHCCHHHHHHHHHHCCEEEEEEECC----CEEEHHHHHH
T ss_conf 9999999999999999999999--------970003999874440999999998699169999648----7134298998
Q ss_pred HH---HHHHHHHHHHCC------------CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHH------------------
Q ss_conf 99---999998888718------------897879999998049949999997889789888------------------
Q gi|254780413|r 706 QI---ALNILSNAIHFT------------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE------------------ 752 (820)
Q Consensus 706 Qv---l~NLl~NAik~t------------~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~------------------ 752 (820)
++ |+.||.||+.+. |+-|+|+++.. ..++.++|+|+|.|.||+++.
T Consensus 432 ~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~-~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~ 510 (716)
T COG0643 432 RLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY-HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAET 510 (716)
T ss_pred HHCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEE-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCC
T ss_conf 8646699888500110589889998759898636999998-379869999956899879999999999829988677520
Q ss_pred ------HHHHCCC-CEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf ------6642377-1873478766678886068999999996198699997889953999996357
Q gi|254780413|r 753 ------LEKAMKP-FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 (820)
Q Consensus 753 ------~~~iFep-F~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~ 811 (820)
..-||.| |+|.+. .+. --|-|.||=+||.-|+.+||+|.|+|+||+||+|+|.||+.
T Consensus 511 lSd~Ei~~LIF~PGFSTa~~-Vtd-vSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 511 LSDEEILNLIFAPGFSTAEQ-VTD-VSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred CCHHHHHHHHHCCCCCCCHH-HHC-CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf 79999998873699873411-101-65776578999999997399899996278976999966879
No 53
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.73 E-value=6e-14 Score=120.12 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=136.2
Q ss_pred HHHHHHH----CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 8523453----174899999999997312687788899999999999899999999999998664318852000331799
Q gi|254780413|r 590 ARVSHEI----RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 (820)
Q Consensus 590 a~vsHEl----rtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~ 665 (820)
+.++.|| -..|+.+.--+++|.... +...+..++.+..|........+-+..||.--|. ....-+|.
T Consensus 363 ~~IARELHDslaQ~Ls~Lkiq~~~l~~~~--~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~-------~l~~~~l~ 433 (569)
T PRK10600 363 ATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPESSRELLSQIRNELNASWAQLRELLTTFRL-------QLTEPGLR 433 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHH
T ss_conf 99999988887222789999999999730--5798889999999999999999999999998355-------77756679
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEC
Q ss_conf 99999999999998737808999737988468988-89999999999988887188978799999980499499999978
Q gi|254780413|r 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILAD-LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 (820)
Q Consensus 666 ~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D-~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~Dt 744 (820)
..+...+..++.+ .++.+++++......+-.. ...+-||+..-|+|++|+.... .|.|++... ++.+.+.|+|+
T Consensus 434 ~aL~~~i~~~~~~---~g~~i~l~~~~~~~~l~~~~~i~l~rIvqEALsNv~KHA~A~-~v~V~l~~~-~~~~~l~I~Dd 508 (569)
T PRK10600 434 PALEASCEEFSAR---FGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQAS-EVVVTVAQN-DNQVKLSVQDN 508 (569)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEEC-CCEEEEEEEEC
T ss_conf 9999999999976---097799995588667987899999999999999999708998-799999976-99899999889
Q ss_pred CCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 8978988866423771873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 745 G~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
|+|++++ ...+.+.||.|-+.=++..||++.++|.||+||+|+++||=....
T Consensus 509 G~Gf~~~------------------~~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~P~~~~ 560 (569)
T PRK10600 509 GCGVPEN------------------AERSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFIPEKTF 560 (569)
T ss_pred CCCCCCC------------------CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 9898988------------------888999781599999997699899986699958999997589887
No 54
>PRK13557 histidine kinase; Provisional
Probab=99.70 E-value=5.8e-16 Score=134.85 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=96.0
Q ss_pred EEEEEC---CCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCC--HHHHHHHHHCCCCCCCEEEEECCCCCCCEE
Q ss_conf 599997---999099966789966289978974996888204016882--389999986379616716886147988379
Q gi|254780413|r 85 FTWNID---AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159 (820)
Q Consensus 85 fvw~~D---~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p--~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~ 159 (820)
-+|.+| +||+++|||++|++|+||+.+|++|+++..+.++.. ++ ...+++++..+.+|.++..++++||+.+|
T Consensus 40 ~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~~~~L~~p~~-~~~~~~~~~~~i~~~~~~~~E~~n~rKDG~~~w- 117 (538)
T PRK13557 40 PMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPET-DRATVADVRDAIAERREIATEILNYRKDGSSFW- 117 (538)
T ss_pred CEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCHHHCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEE-
T ss_conf 389935899998799983999998795999986999877089889-999999999999759936879999879999999-
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 9998630015688736305566898522103779999986324
Q gi|254780413|r 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 (820)
Q Consensus 160 ~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~ 202 (820)
+.++..|++|.+|++.+| ++|.+|++++++.++.++..++
T Consensus 118 -~~~~i~pv~d~~G~~~~~--~~i~~DITerk~~E~~L~qaqk 157 (538)
T PRK13557 118 -NALFVSPVYNDAGDLVYF--FGSQLDVSRRRDAEDALRQAQK 157 (538)
T ss_pred -EEEEEEEEECCCCCEEEE--EEEEECHHHHHHHHHHHHHHHH
T ss_conf -998999999899999999--9988344499999999999999
No 55
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.64 E-value=4.1e-13 Score=113.95 Aligned_cols=190 Identities=19% Similarity=0.280 Sum_probs=116.3
Q ss_pred HHHHHHHCCHHHHHHHHHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 85234531748999999999---973126877888999999999998999999999999986643188520003317999
Q gi|254780413|r 590 ARVSHEIRTPLTAIIGFSEV---IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 590 a~vsHElrtPL~~I~g~~~~---l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
..+|+||.--+.--+....+ +... ......++.++-++.+.+-.+ +-++++...-+ +|.+...+-..
T Consensus 172 ~RIARdLHDsv~q~L~~i~m~~~~~~~-~~~~~~e~~~~~l~~i~~~~~---e~l~evR~~v~------~Lrp~~l~~~~ 241 (365)
T COG4585 172 NRIARDLHDSVGQSLTAISMLLALLLL-LADEDAEKAQEELKEIEKLLR---EALQEVRALVR------DLRPVELEGLG 241 (365)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHH------HCCCHHHHHHH
T ss_conf 998898506687999999999999887-212684889999999999999---99999999999------71973221211
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECC
Q ss_conf 9999999999998737808999737988468-988899999999999888871889787999999804994999999788
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v-~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG 745 (820)
++......+..--...++.+........+++ ..-..-|-.|++--|+||+||...- .|.|.....++ .++++|+|||
T Consensus 242 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~-~v~V~l~~~~~-~l~l~V~DnG 319 (365)
T COG4585 242 LVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQAT-EVRVTLERTDD-ELRLEVIDNG 319 (365)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCC-EEEEEEEECC
T ss_conf 799999999998775083788615764467996899999999999998998757845-69999998298-8999999899
Q ss_pred CCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 97898886642377187347876667888606899999999619869999788995399999635
Q gi|254780413|r 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 746 ~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
+|.+++.. |+|+||.=-|.=|+..||++.++|.||+||+++|.+|+
T Consensus 320 ~Gf~~~~~-------------------~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 320 VGFDPDKE-------------------GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred CCCCCCCC-------------------CCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 78897645-------------------77766766999999869989998559997799999509
No 56
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.61 E-value=2e-12 Score=108.97 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=146.0
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 6514444345765446688789999999999852345317489999999999731268778889999999999989999-
Q gi|254780413|r 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV- 637 (820)
Q Consensus 559 ~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l- 637 (820)
.++++++.++..+... .|..++.-+.|-++|-|..|.+.+.+-.+. .. ++ ..++ ...+..|+
T Consensus 2 ~~~~~~~~~e~~~~~~---------~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~-~~---~~-~~e~---~~~~~~Ri~ 64 (221)
T COG3920 2 LLTTARKETEERLAES---------EKELLLREIHHRVKNNLQIISSLLRLQARK-FE---DE-VLEA---LRESQNRIQ 64 (221)
T ss_pred CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CH-HHHH---HHHHHHHHH
T ss_conf 0478888899999999---------899999999999887999999999977752-36---67-8999---999988999
Q ss_pred -HHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEC-HHHHHHHHHHHHHHH
Q ss_conf -999999999866431885200033179999999999999998737808999737988468988-899999999999888
Q gi|254780413|r 638 -LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD-LRSVKQIALNILSNA 715 (820)
Q Consensus 638 -~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D-~~~l~Qvl~NLl~NA 715 (820)
+.++.++|.-| ....++...+++.+...+.+....+.+.+.....+.+ .+-.| +.-|--|+--|++||
T Consensus 65 sla~~He~L~~s---------~~~~~~~~~y~~~L~~~l~~~~~~~~~~~~~~~~~~~-~l~~d~A~~Lgliv~EL~tNa 134 (221)
T COG3920 65 SLALIHELLYKS---------GDDTWDFASYLELLASNLFPSYGGKDIRLILDSGPNV-FLDPDTAVPLGLIVHELVTNA 134 (221)
T ss_pred HHHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE-EECHHHHHHHHHHHHHHHHHH
T ss_conf 999999998068---------8651759999999999988762788752788228862-267367889999999999988
Q ss_pred HHCCCC---CCEEEEEEEECCCC-EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHH-HHCCC
Q ss_conf 871889---78799999980499-49999997889789888664237718734787666788860689999999-96198
Q gi|254780413|r 716 IHFTPS---GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMG 790 (820)
Q Consensus 716 ik~t~~---gg~v~v~~~~~~~~-~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iV-e~hgG 790 (820)
+||.-. +|.|.|.+....++ ...+.|+|+|.|+|.+. || ...|||+.+++.+| +..||
T Consensus 135 ~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~------~~-----------~~~g~G~~Lv~~lv~~q~~g 197 (221)
T COG3920 135 LKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA------PL-----------SRGGFGLQLVERLVPEQLGG 197 (221)
T ss_pred HHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCC------CC-----------CCCCCHHHHHHHHHHHHCCC
T ss_conf 98617888997799999984799717999987898988888------87-----------89983799999999996797
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 6999978899539999963577788
Q gi|254780413|r 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 791 ~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
.+...+.. ||.|+|.||+.+...
T Consensus 198 ~~~~~~~~--Gt~~~i~~~~~~~~~ 220 (221)
T COG3920 198 ELEDERPD--GTEFRLRFPLSEAAS 220 (221)
T ss_pred EEEEECCC--CEEEEEEEECCCCCC
T ss_conf 27997499--779999988644346
No 57
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.60 E-value=5.3e-12 Score=105.86 Aligned_cols=186 Identities=20% Similarity=0.283 Sum_probs=129.8
Q ss_pred HHHHH----HCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 52345----31748999999999973126877888999999999998999999999999986643188520003317999
Q gi|254780413|r 591 RVSHE----IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 591 ~vsHE----lrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
.+|.| +=.-|++|.-.+.++.+. . ..++...+..+.|...+.++.+-+.+++.-=|. .......|.+
T Consensus 306 ~IARELHDEiGQ~LTAIr~~a~~i~r~--~-~~~~~~~~~a~~I~~l~~~i~~~vR~ll~~LRP------~~LDdLGL~~ 376 (497)
T PRK11644 306 DVARELHDEIGQTITAIRTQASIVKRL--A-ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRP------RQLDDLTLEQ 376 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHCCHHH
T ss_conf 999970003405999999999998632--6-997668999999999999999999999986090------3111248999
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECC
Q ss_conf 99999999999987378089997379884689-88899999999999888871889787999999804994999999788
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~-~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG 745 (820)
.++..+..++.+ ..++.+..+...+...+. .-..-+-.|.+--+.|++||.... +|.|+....+ +.+.++|+|+|
T Consensus 377 AL~~Lv~e~~~~--~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A~-~V~I~L~~~~-~~l~L~I~DDG 452 (497)
T PRK11644 377 AIRSLMRELELE--DRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADAS-AVTIQGWQQD-ERLMLVIEDNG 452 (497)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECC-CEEEEEEEECC
T ss_conf 999999987652--5795599982687667982468899999999999999737887-6999999769-98999998899
Q ss_pred CCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 97898886642377187347876667888606899999999619869999788995399999635
Q gi|254780413|r 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 746 ~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
+|++++. ...|+||.=-|.=|++.||++.++|.+ ||++.|.+|-
T Consensus 453 ~Gf~~~~-------------------~~~G~GL~GMrERV~aLGG~l~I~S~~--GT~I~V~LP~ 496 (497)
T PRK11644 453 SGLPPGS-------------------GQQGFGLRGMQERVSALGGTLTISCTH--GTRLSVTLPQ 496 (497)
T ss_pred CCCCCCC-------------------CCCCCCCHHHHHHHHHCCCEEEEEECC--CCEEEEECCC
T ss_conf 8989898-------------------999989267999999749979998289--9779995899
No 58
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.57 E-value=2.3e-12 Score=108.54 Aligned_cols=183 Identities=23% Similarity=0.302 Sum_probs=122.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHH
Q ss_conf 85234531748999999999973126877888999999999998999999999999986643188520003317999999
Q gi|254780413|r 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 (820)
Q Consensus 590 a~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~ 669 (820)
-...|.|.|-|+.|.++++.- ...++.+.+...++.+. .++++. -..+++.+=+.
T Consensus 264 qi~pHfL~NtL~~I~~~~~~~-----------~~~~~~~~v~~l~~llR------~~l~~~--------~~~~~l~~E~~ 318 (456)
T COG2972 264 QINPHFLYNTLETIRMLAEED-----------DPEEAAKVVKALSKLLR------YSLSNL--------DNIVTLEIELL 318 (456)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHH------HHHHCC--------CCCCCHHHHHH
T ss_conf 126168999999999998735-----------79999999999999999------750065--------55341999999
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEECCCCEEEEEEEEC
Q ss_conf 9999999998737808999737988468-9888999999999998888718----8978799999980499499999978
Q gi|254780413|r 670 EAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVRDT 744 (820)
Q Consensus 670 ~~~~~~~~~a~~~~i~l~~~~~~~lp~v-~~D~~~l~Qvl~NLl~NAik~t----~~gg~v~v~~~~~~~~~v~i~V~Dt 744 (820)
-+...+..+-.+-+..|++..+-+.... .-|| .-++++||-||++|. .+||.|.|..... ++.+.++|+||
T Consensus 319 ~~~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p---~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~-~~~i~i~i~Dn 394 (456)
T COG2972 319 LIEKYLEIQKLRIGDRLEVPLPIDEELEPLIDP---KLVLQPLVENAIEHGIEPKRPGGSIAISAKKQ-DDVIQISISDN 394 (456)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC-CCEEEEEECCC
T ss_conf 999999999819987999972037533202327---88988879999998620469995799999405-87999997769
Q ss_pred CCCCCHHHHHHHCCCCEEECCCCCCCCCC-CCCHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEECCCC
Q ss_conf 89789888664237718734787666788-860689999999961986--999978899539999963577
Q gi|254780413|r 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEG-TGLGLPLAKAMVDANMGK--FYIFSTPAKGTLIEIIFPLYD 812 (820)
Q Consensus 745 G~GI~~~~~~~iFepF~~~~~~~~~~~~G-tGLGLai~k~iVe~hgG~--i~v~S~pG~Gt~f~v~lP~~~ 812 (820)
|+||+++....+.. +.++ .|+||.=++.....|-|. +.++|.+|+||++.++.|...
T Consensus 395 g~g~~~~~~~~~~~-----------~~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 395 GPGIDEEKLEGLST-----------KGENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred CCCCCHHHHHHHHH-----------CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHHC
T ss_conf 99958788866764-----------1577777358879999987189762179996489589999986301
No 59
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.57 E-value=8.1e-12 Score=104.50 Aligned_cols=189 Identities=19% Similarity=0.277 Sum_probs=147.5
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 8523453174899999999997---3126877888999999999998999999999999986643188520003317999
Q gi|254780413|r 590 ARVSHEIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 590 a~vsHElrtPL~~I~g~~~~l~---~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
+.|+-||.--|.-.++|..+=. .....+...++.++.+..|+.+.+-.=+-+..||.--|. +.+.-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCHHH
T ss_conf 9999987789999999999999999842786566879999999999999999999999998787-------605676389
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 99999999999987378089997379884689888---999999999998888718897879999998049949999997
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADL---RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~---~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~D 743 (820)
.++++++.++.+ .++.+++++ .+|...-++ ..+-||+.-=++||+|+.. +..|.|++...+ |.+.++|+|
T Consensus 447 AL~~~~~~f~~q---tg~~~~l~~--qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~~~-g~~~~~VeD 519 (574)
T COG3850 447 ALEQMLAEFSNQ---TGITVTLDY--QLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQND-GQVTLTVED 519 (574)
T ss_pred HHHHHHHHHHHC---CCCEEEEEC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECC-CEEEEEEEE
T ss_conf 999999999734---697388725--6898899878999999999999998998526-675899998659-648999942
Q ss_pred CCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 8897898886642377187347876667888606899999999619869999788995399999635
Q gi|254780413|r 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 744 tG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
||+||++. ..+ .| --||.|-+.=....+|.+.+++.||.||.|.++||=
T Consensus 520 nG~Gi~~~-----------~e~------~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~ 568 (574)
T COG3850 520 NGVGIDEA-----------AEP------SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPP 568 (574)
T ss_pred CCCCCCCC-----------CCC------CC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECC
T ss_conf 88377975-----------677------88-723699999999725757776459998179999564
No 60
>PRK13559 hypothetical protein; Provisional
Probab=99.55 E-value=3.9e-13 Score=114.18 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=87.2
Q ss_pred EEEECCC---CCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH--HHHHHHHHCCCCCCCEEEEECCCCCCCEEE
Q ss_conf 9999799---90999667899662899789749968882040168823--899999863796167168861479883799
Q gi|254780413|r 86 TWNIDAH---GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160 (820)
Q Consensus 86 vw~~D~e---Gr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~--~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~ 160 (820)
+.-+|+. .-++|+|++|++|+||+.+|++||++.-+-.+ +.+|. .++++++..+..+..+.++|++||+.+|..
T Consensus 58 ~~itd~~~~d~PIiy~N~aF~~lTGYs~~EviGrncrfLqGp-~t~~~~v~~ir~ai~~~~~~~~el~nyrKDGs~fwn~ 136 (363)
T PRK13559 58 MCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGA-GTDPAAVAKIRAAIAAERVVVVELLNYRKDGSPFWNA 136 (363)
T ss_pred EEEECCCCCCCCEEEECHHHHHHHCCCHHHHCCCCCHHCCCC-CCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE
T ss_conf 899689999998899887999763989799849992410899-9998999999999983994699999982699824776
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHH
Q ss_conf 998630015688736305566898522103779999986
Q gi|254780413|r 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 (820)
Q Consensus 161 v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~ 199 (820)
+ ...||+|.+|++..| ||+..|+++.++.++....
T Consensus 137 l--~isPV~D~~G~v~~f--ig~q~DvTd~~~~~a~e~~ 171 (363)
T PRK13559 137 L--HLGPIYDEDGKLLYF--FGSQWDVTDIRAVRALEAH 171 (363)
T ss_pred E--EEEEEECCCCCEEEE--EEEEEEECCCCCHHHHHHH
T ss_conf 8--988879899979999--9999851554204558999
No 61
>PRK03660 anti-sigma F factor; Provisional
Probab=99.51 E-value=3.2e-13 Score=114.79 Aligned_cols=103 Identities=26% Similarity=0.419 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCC
Q ss_conf 88999999999998888718---897879999998049949999997889789888664237718734787666788860
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGL 776 (820)
|-..+.-++-..+.|||+|. .++|.|.|+.... ++.+.|+|+|+|+||++ ++..|+||+++++. .+++||
T Consensus 36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~-~~~l~I~V~D~G~Gid~--~~~~~~P~~t~~~~----~~~~Gl 108 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIE-DEELEITVRDEGKGIED--VEEARQPLFTTKPE----LERSGM 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCC--HHHCCCCCCCCCCC----CCCCCH
T ss_conf 999999999999999998603679992799999980-99999999973789473--76643887766876----675640
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 6899999999619869999788995399999635777
Q gi|254780413|r 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 777 GLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
||+|.++|+ .++.++|.||+||+|+++-.+...
T Consensus 109 Gl~li~~Lm----DeVei~s~~g~GTtV~m~k~l~~~ 141 (146)
T PRK03660 109 GFTFMESFM----DEVEVESEPGKGTTIRMKKKLKKS 141 (146)
T ss_pred HHHHHHHHC----CEEEEEECCCCCEEEEEEEEECCC
T ss_conf 589999838----869999559997899999997554
No 62
>PRK10060 RNase II stability modulator; Provisional
Probab=99.41 E-value=1.8e-11 Score=102.02 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=88.9
Q ss_pred CCCCCCCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH--HHHHHHHHCCCCCCCEEEEEC
Q ss_conf 435577898105999979990999667899662899789749968882040168823--899999863796167168861
Q gi|254780413|r 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWP 151 (820)
Q Consensus 74 ~~~~~~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~--~~i~~~l~~~~~~~~~~~~~~ 151 (820)
.||....-- |..+|++|++..||++|++++||+.+|++|+++..+.....-++. ..+...+.+++.|.||.-+.+
T Consensus 115 ~Vfe~a~eg---I~ItD~~~~I~~vN~af~~iTGy~~~eviG~n~~~l~~s~~~~~~~~~~~~~~l~~~~~w~gE~w~r~ 191 (663)
T PRK10060 115 QVVSEANSV---IVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIKT 191 (663)
T ss_pred HHHHCCCCE---EEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 998545864---99997999988786797788689999918998799835755448899999999974981898888740
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 479883799998630015688736305566898522103779999986324
Q gi|254780413|r 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 (820)
Q Consensus 152 ~~g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~ 202 (820)
++|..+..|.. ..+.+..|...-| .+++..|+++++..++..+.++.
T Consensus 192 k~G~~~~~~~~---~~v~~~~~~~~~~-~i~~f~DITe~k~~ee~l~~lA~ 238 (663)
T PRK10060 192 RKGQRLFLFRN---KFVHSGSGKNEIF-LICSGTDITEERRAQERLRILAN 238 (663)
T ss_pred CCCCEEEEEEE---EEEECCCCCEEEE-EEEEEEECCHHHHHHHHHHHHHC
T ss_conf 58964579887---8776078970699-99988880489999999998736
No 63
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.37 E-value=7.2e-12 Score=104.89 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=70.7
Q ss_pred HHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 99999997422043078599838721568998848960320786443345645627789999988606984022348887
Q gi|254780413|r 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 (820)
Q Consensus 452 ~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (820)
++|++++|+++++|+++|.+|+|+++|++++++|||++++++|+++..++++++.......+......+.. ....+...
T Consensus 1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~ 79 (112)
T pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEE-SRGGEVSF 79 (112)
T ss_pred CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEEE
T ss_conf 97999998342461999899999999165332258636674375201245753439999999999981997-68877652
Q ss_pred ECCCCCEEEEEEEEEECCCCC---EEEEEEEEH
Q ss_conf 638972899999988717887---399998651
Q gi|254780413|r 532 STKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 (820)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~---~~~~v~~Di 561 (820)
+.++|+.+|+..+..++.+.. +++++++||
T Consensus 80 ~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI 112 (112)
T pfam00989 80 RVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI 112 (112)
T ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf 879998999999999999199999999999849
No 64
>pfam00512 HisKA His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases.
Probab=99.36 E-value=3.2e-12 Score=107.47 Aligned_cols=66 Identities=48% Similarity=0.761 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999998523453174899999999997312687788899999999999899999999999998664318
Q gi|254780413|r 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 (820)
Q Consensus 584 ~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG 653 (820)
+|.+|++++||||||||++|.|++++|.+... ++.+.+|++.|.+++++|..||+++|+|||+++|
T Consensus 1 ~k~~f~~~isHelrtPL~~i~~~~~~l~~~~~----~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~e~g 66 (66)
T pfam00512 1 AKSEFLANLSHELRTPLTAIRGYLELLLDTEL----SEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98899998729871848888748899887232----7999999997689999999999999999865489
No 65
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.32 E-value=2.5e-08 Score=78.90 Aligned_cols=310 Identities=17% Similarity=0.193 Sum_probs=171.8
Q ss_pred HHHCCH-HEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE--EE---
Q ss_conf 742204-307859983872156899884896032078644334564562778999998860698402234888--76---
Q gi|254780413|r 459 EATSDG-IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GS--- 532 (820)
Q Consensus 459 e~~~~g-I~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 532 (820)
+--+|| .+++|.+|+ .+..--..++.|++++.+..|...+.....+.....+|....+-.+-. ..
T Consensus 90 dyG~DGYFF~YD~~G~---------NlvHPrQpelvG~nlw~L~D~rGd~~Iq~Li~kAq~GGG~~qYlWeKPSs~e~v~ 160 (459)
T COG4564 90 DYGSDGYFFVYDYQGT---------NLVHPRQPELVGQNLWQLTDPRGDRVIQALIAKAQEGGGLHQYLWEKPSSHETVD 160 (459)
T ss_pred CCCCCCEEEEEECCCC---------CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
T ss_conf 6588853899945886---------1457787454563255411877585999999997707975777413897444234
Q ss_pred -----CCCCCEEEEEEEEEECCCCCE----------------EE----------------EEEEEHHHHHHHHHHHHHHH
Q ss_conf -----389728999999887178873----------------99----------------99865144443457654466
Q gi|254780413|r 533 -----TKEEKLLSLRIIIKKLPFSSC----------------YS----------------LTMHDISEWKQEKNKLSHAK 575 (820)
Q Consensus 533 -----~~~~~~~~~~~~~~~~~~~~~----------------~~----------------~v~~Dite~k~~e~el~~~~ 575 (820)
.+-..|-|+-.+...+.+... ++ +....+.+++.+-..|++..
T Consensus 161 KLsyaa~ldkW~WMiGTGlYldDv~~~~~~~~~~~~anId~tf~~Vv~iavv~vllV~~t~lalNl~ehRlAD~kLkeL~ 240 (459)
T COG4564 161 KLSYAAGLDKWEWMIGTGLYLDDVSAETAAAQAAVRANIDTTFLIVVLIAVVAVLLVFATCLALNLREHRLADKKLKELA 240 (459)
T ss_pred HHCCCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42113576631124203302275899999999998617452679999999999999999998731198774555799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8878999999999985234531----748999999999973126877888999999999998999999999999986643
Q gi|254780413|r 576 KIAEKESSHKSDFLARVSHEIR----TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 (820)
Q Consensus 576 ~~~e~~~~~k~~fla~vsHElr----tPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srie 651 (820)
++-..-.++-=+.+|.||. +-|-++.-..++.......|.+. ....|.+++.++..-|+.+.-+|.
T Consensus 241 ---qrvv~tQedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH-- 310 (459)
T COG4564 241 ---QRVVDTQEDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH-- 310 (459)
T ss_pred ---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf ---9984120678999999875007777799999999996267799888-----750156678999989999998502--
Q ss_pred CCCCCCCEEEEC---HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 188520003317---9999999999999998737808999737988468-988899999999999888871889787999
Q gi|254780413|r 652 SGKMNLHFEPVS---LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 652 aG~~~l~~~~vd---l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v-~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
+|.+..+| |...++..++.++ ++.++.++...+...-.+ ..-.+-|-.|.+.-++|--++... .+|+|
T Consensus 311 ----~LRP~~LDDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A-trv~i 382 (459)
T COG4564 311 ----DLRPRALDDLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA-TRVTI 382 (459)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEE
T ss_conf ----357455544307999999999864---3668379997057864478278889999999998778860687-17999
Q ss_pred EEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99980499499999978897898886642377187347876667888606899999999619869999788995399999
Q gi|254780413|r 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 (820)
Q Consensus 728 ~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~ 807 (820)
... ..++.|.+.|+|||+|.+-+.... +=.||||-=-+.=+...||++.|+|+|. ||.+++.
T Consensus 383 ll~-~~~d~vql~vrDnG~GF~~~~~~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~ 444 (459)
T COG4564 383 LLQ-QMGDMVQLMVRDNGVGFSVKEALQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVL 444 (459)
T ss_pred EEC-CCCCCEEEEEECCCCCCCCHHHCC----------------CCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEE
T ss_conf 861-577606999823899856165316----------------7556451009999997486589975698-7279998
Q ss_pred ECCCCC
Q ss_conf 635777
Q gi|254780413|r 808 FPLYDT 813 (820)
Q Consensus 808 lP~~~~ 813 (820)
||+.-+
T Consensus 445 Lp~~~~ 450 (459)
T COG4564 445 LPLDAS 450 (459)
T ss_pred ECCHHH
T ss_conf 140466
No 66
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.31 E-value=1.8e-11 Score=101.92 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=77.5
Q ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf 999979990999667899662899789749968882040168823-8999998637961671688614798837999986
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls 164 (820)
||.+|++|+|+++|++|++++|++.++++|++|.++.++...+.. ..+.++++.+..+. .......+|.. .|+.++
T Consensus 8 i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~--~~~~~~ 84 (110)
T pfam08448 8 LAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERALRRALEGEEPID-FLEELLLNGEE--RHYELR 84 (110)
T ss_pred HEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEE-EEEEECCCCCC--EEEEEE
T ss_conf 379949996999934746670989899809512100680345667778999973895588-66430258852--000435
Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCHHH
Q ss_conf 3001568873630556689852210377
Q gi|254780413|r 165 ALPIYSRNREFSGFRGFGIVHVNRVDND 192 (820)
Q Consensus 165 ~~Pv~d~~g~~~G~rG~gv~r~~~~~~~ 192 (820)
..|++|.+|++.|+ +++++|++++++
T Consensus 85 ~~pi~d~~G~~~g~--v~~~~DITerKq 110 (110)
T pfam08448 85 LTPLRDPDGEVIGV--LVISRDITERRR 110 (110)
T ss_pred EEEEECCCCCEEEE--EEEEEECCHHCC
T ss_conf 76689899999999--999998833129
No 67
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.31 E-value=2.4e-09 Score=86.41 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEECHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEECHHHHH
Q ss_conf 999989999999999999866431885200-03317999999999999999873--780899973798846898889999
Q gi|254780413|r 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLH-FEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVK 705 (820)
Q Consensus 629 ~i~~~~~~l~~li~dlLd~srieaG~~~l~-~~~vdl~~lv~~~~~~~~~~a~~--~~i~l~~~~~~~lp~v~~D~~~l~ 705 (820)
.|+++.++.+.+|-+|-.|-|- .++.. .+.|+|.+-++.+-+-++-+-.+ .+..+.+++++.+-++.--+ -
T Consensus 386 ~IR~npdkAreLil~LS~yfR~---NL~~~~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~-f-- 459 (557)
T COG3275 386 VIRRNPDKARELILYLSTYFRY---NLENNTQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPS-F-- 459 (557)
T ss_pred HHCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCH-H--
T ss_conf 8617827999999999999998---734787158655999999999998998644884479994687775336861-6--
Q ss_pred HHHHHHHHHHHHCC----CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf 99999998888718----89787999999804994999999788978988866423771873478766678886068999
Q gi|254780413|r 706 QIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 (820)
Q Consensus 706 Qvl~NLl~NAik~t----~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~ 781 (820)
+++-|+-||||+. .+.|.|+|++..++. .+.+.|+|||.||+|+ .-.|+|+||+.+
T Consensus 460 -ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~-~l~i~VeDng~li~p~------------------~~~g~giGL~nv 519 (557)
T COG3275 460 -ILQPLVENAIKHGISQLKDTGRVTISVEKEDA-DLRIEVEDNGGLIQPD------------------EEDGTGIGLANV 519 (557)
T ss_pred -HHHHHHHHHHHHCCCCHHCCCCEEEEEEEECC-EEEEEEECCCCCCCCC------------------CCCCCCHHHHHH
T ss_conf -67788888887536444208817999998088-3899994188776997------------------788987178899
Q ss_pred HHHHHHCCC---EEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 999996198---699997889953999996357778
Q gi|254780413|r 782 KAMVDANMG---KFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 782 k~iVe~hgG---~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
++=++.|=| -++++|.+..||+|.+++|...+.
T Consensus 520 ~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 520 HKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRTA 555 (557)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf 999998648210313786167786899994476556
No 68
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.26 E-value=4.4e-11 Score=99.13 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=84.6
Q ss_pred HHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
Q ss_conf 97422043078599838721568998848960320786443345645627789999988606984022348887638972
Q gi|254780413|r 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 (820)
Q Consensus 458 le~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (820)
+|++|++|+++|.+|+|+++|+++++++|++.++++|+++.++++++..+.....+..+..++.....+ ... ..+|.
T Consensus 1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~ 77 (110)
T pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERALRRALEGEEPIDFL-EEL--LLNGE 77 (110)
T ss_pred CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-EEE--CCCCC
T ss_conf 998573537994999699993474667098989980951210068034566777899997389558866-430--25885
Q ss_pred EEEEEEEEEECC--CCC--EEEEEEEEHHHHHH
Q ss_conf 899999988717--887--39999865144443
Q gi|254780413|r 538 LLSLRIIIKKLP--FSS--CYSLTMHDISEWKQ 566 (820)
Q Consensus 538 ~~~~~~~~~~~~--~~~--~~~~v~~Dite~k~ 566 (820)
..++.++..++. ++. +++++++|||++|+
T Consensus 78 ~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq 110 (110)
T pfam08448 78 ERHYELRLTPLRDPDGEVIGVLVISRDITERRR 110 (110)
T ss_pred CEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf 200043576689899999999999998833129
No 69
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.25 E-value=4.4e-11 Score=99.10 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCC-CEEEEECCCCCCCEEEEE
Q ss_conf 5999979990999667899662899789749968882040168823-89999986379616-716886147988379999
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY-GKTTLWPIEGTNLYVPID 162 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~-~~~~~~~~~g~~~~~~v~ 162 (820)
.||.+|++|+++|+|+++++++||+++|++|+++.++.++.+.... ..+.+.+..+..+. .+....++||+. +|++
T Consensus 13 ~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~--~~~~ 90 (112)
T pfam00989 13 GIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVSFRVPDGRP--RHVE 90 (112)
T ss_pred HEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCE--EEEE
T ss_conf 61999899999999165332258636674375201245753439999999999981997688776528799989--9999
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf 8630015688736305566898522
Q gi|254780413|r 163 LAALPIYSRNREFSGFRGFGIVHVN 187 (820)
Q Consensus 163 ls~~Pv~d~~g~~~G~rG~gv~r~~ 187 (820)
+++.|++|.+|.. |+. +++||+
T Consensus 91 ~~~~pi~d~~g~~-g~v--~i~rDI 112 (112)
T pfam00989 91 VRASPVRDAGGEI-GFL--GVLRDI 112 (112)
T ss_pred EEEEEEECCCCCE-EEE--EEEECC
T ss_conf 9999999199999-999--999849
No 70
>TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction.
Probab=99.24 E-value=1.3e-10 Score=95.74 Aligned_cols=123 Identities=21% Similarity=0.348 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE--
Q ss_conf 999999999974220430785998387215689988489603207864433456456277899999886069840223--
Q gi|254780413|r 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-- 526 (820)
Q Consensus 449 ~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 526 (820)
.++.++++++++++++++++|.+|.++++|+++++++||+.+++.|+++..+++++........+......+......
T Consensus 2 ~~e~~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T TIGR00229 2 ESEERYRAIFESSPDAIIVVDLEGNILYVNPAFEELFGYSAEELLGRNVLELIPEEDREELRERIERLLETGEREPVSEE 81 (130)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 15899999862245426887057615750325777617875895387510002764146899999876326754320123
Q ss_pred EEEEEECCCCCEEEEEEEEEECCC--C--CEEEEEEEEHHHHHHHHHHH
Q ss_conf 488876389728999999887178--8--73999986514444345765
Q gi|254780413|r 527 KITLGSTKEEKLLSLRIIIKKLPF--S--SCYSLTMHDISEWKQEKNKL 571 (820)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~Dite~k~~e~el 571 (820)
....+..++|..+|+.....++.+ + .+++++++|||++|.+++++
T Consensus 82 ~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~d~t~~~~~~~~l 130 (130)
T TIGR00229 82 RRVLGRRKDGSEIWVEVSVSPIRDSNGGVLGVLGIVRDITERKEAEEAL 130 (130)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCC
T ss_conf 4666443789688998730100001377036776652114789988509
No 71
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.17 E-value=2.9e-09 Score=85.84 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=53.6
Q ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCC--CCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf 99979990999667899662899789749968882040168--8238999998637961671688614798837999986
Q gi|254780413|r 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 (820)
Q Consensus 87 w~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~--~p~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls 164 (820)
...+++.++.|+|++|++++||.+.+++|++..-+- ..+. ++...+..++..+..|+.+-.++++||+.+| .+..
T Consensus 175 ~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~lq-~~~~~~e~~~~~~~ai~~~~~~~ve~r~~r~dG~~~w--~~~~ 251 (674)
T PRK13558 175 DATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQ-GPKTNEDRVAEFWTAITEDHDTQVVLRNYRRDGSLFW--NQVD 251 (674)
T ss_pred CCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHC-CCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE--EECC
T ss_conf 688888743886012365318981786497401210-6888805799999997558863345333146883787--4124
Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 30015688736305566898522103779999986324
Q gi|254780413|r 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 (820)
Q Consensus 165 ~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~ 202 (820)
..|++|.+|.+..|-| +-+++++++.+++.++.-.+
T Consensus 252 i~pi~Dedg~v~~~Vg--~~~DiteRke~E~~L~~~~~ 287 (674)
T PRK13558 252 ISPIYDEDGTVSHYVG--FQMDVSERMAAQQELQGERQ 287 (674)
T ss_pred CCCCCCCCCCEEEEEE--ECCCHHHHHHHHHHHHHHHH
T ss_conf 5521057885899986--21447788999999998688
No 72
>KOG0787 consensus
Probab=99.17 E-value=2.9e-08 Score=78.44 Aligned_cols=196 Identities=15% Similarity=0.207 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCEEEECHHHHHHHHHHHHHHHHHHCC---EEEE
Q ss_conf 7788899999999999899999999999998664318852------000331799999999999999987378---0899
Q gi|254780413|r 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN------LHFEPVSLDEAVSEAISLVQLYANEKR---ILIR 687 (820)
Q Consensus 617 ~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~------l~~~~vdl~~lv~~~~~~~~~~a~~~~---i~l~ 687 (820)
|......+.+|+.--.+--.+.-|+|+-+-+-- .|+.+ .-...+++.++|.++.+..+--...+= =++.
T Consensus 167 p~~~~~iqyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~ 244 (414)
T KOG0787 167 PVTEKNIQYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELI 244 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC--CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 406778999999999988999999865552002--799987664433179999999999999999999998633797067
Q ss_pred EEECCCCCEEEECHHHHHHHHHHHHHHHHHCCC----CCC----EEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCC
Q ss_conf 973798846898889999999999988887188----978----799999980499499999978897898886642377
Q gi|254780413|r 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTP----SGG----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 (820)
Q Consensus 688 ~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~----~gg----~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFep 759 (820)
.....++..-.+=|.-|.-++.-|+.||.++|= ..+ .|.|.+. .++..+.|.|+|-|-||+.+..+++|.=
T Consensus 245 i~~~~a~~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~-~gdeDl~ikISDrGGGV~~~~~drlf~Y 323 (414)
T KOG0787 245 IEGHNALSFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVA-KGDEDLLIKISDRGGGVPHRDIDRLFSY 323 (414)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 537666767604561899999999999999999974448888998599986-3886358997137899680578999866
Q ss_pred CEEECCCCC------CCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 187347876------66788860689999999961986999978899539999963577788
Q gi|254780413|r 760 FGQIPNSQQ------IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 760 F~~~~~~~~------~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
-|.|.+... ..-.|-|.||+|||.-.+--||.+.+.|-.|-||-+-|.|-....+.
T Consensus 324 ~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787 324 MYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSMEA 385 (414)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCC
T ss_conf 12568898778877676665556873799999994887057852035442689952688641
No 73
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.16 E-value=1e-07 Score=74.40 Aligned_cols=186 Identities=20% Similarity=0.295 Sum_probs=136.9
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 99985234531748999999999973126877888999999999998999999999999986643188520003317999
Q gi|254780413|r 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 587 ~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
+.+--.--||-.-.++|..-+.++.+ . .+++..+...+.|..=+.+.-+-+..||.==|.. ......+.+
T Consensus 305 ~vARELHDeIGQnITAIr~Qa~ivkR--~--~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~------~LDdL~l~q 374 (497)
T COG3851 305 DVARELHDEIGQNITAIRTQAGIVKR--A--ADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPR------QLDDLTLEQ 374 (497)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCHHH
T ss_conf 99999899864607899999999986--5--7977788788999999989999999998715973------222257899
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 99999999999987378089997379884689888---999999999998888718897879999998049949999997
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADL---RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~---~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~D 743 (820)
++...+..|+ ..+++|+...+...+- -.-|+ .-|-.+.+.++.|-+|+.... +|+|..- .++..+.++|+|
T Consensus 375 ai~~l~~Em~--~~ergihcq~~~~~n~--~~ldet~rvTLyRl~QE~LNNI~KHA~AS-~V~i~l~-~~~e~l~Lei~D 448 (497)
T COG3851 375 AIRSLLREME--LEERGIHCQLDWRINE--TALDETQRVTLYRLCQELLNNICKHADAS-AVTIQLW-QQDERLMLEIED 448 (497)
T ss_pred HHHHHHHHHH--HHHCCEEEEEECCCCC--CCCCCCEEEEHHHHHHHHHHHHHHCCCCC-EEEEEEE-ECCCEEEEEEEC
T ss_conf 9999999852--5445627987056676--67885437728999999999997500226-2799995-178189999825
Q ss_pred CCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 889789888664237718734787666788860689999999961986999978899539999963
Q gi|254780413|r 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 (820)
Q Consensus 744 tG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP 809 (820)
+|+|+|+. .+=+|+||.=-+.=|.+.||++.++| -.||.+.|.||
T Consensus 449 dG~Gl~~~-------------------~~v~G~Gl~GmrERVsaLGG~l~lss--q~GTrviVnLP 493 (497)
T COG3851 449 DGSGLPPG-------------------SGVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred CCCCCCCC-------------------CCCCCCCCCHHHHHHHHHCCCEEEEE--CCCCEEEEECC
T ss_conf 88678999-------------------98567572008999997478258874--36858999460
No 74
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=99.15 E-value=2.2e-10 Score=94.04 Aligned_cols=65 Identities=48% Similarity=0.748 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999998523453174899999999997312687788899999999999899999999999998664318
Q gi|254780413|r 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 (820)
Q Consensus 585 k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG 653 (820)
+++|++.+||||||||++|++++++|.+.. .+++..+|++.|.++++++..||+++|+|||++.|
T Consensus 2 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~----~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~ 66 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTE----LSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 889999976987081888999988653027----99999999998899999999999999999873699
No 75
>PRK10060 RNase II stability modulator; Provisional
Probab=99.12 E-value=3.1e-09 Score=85.57 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEC-CEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 4565455565789999634997899709-958872068898837984477224676112202455451356789998750
Q gi|254780413|r 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 (820)
Q Consensus 311 ~~~~~~~~~~~~~~ild~lp~gv~i~~~-gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 389 (820)
....+....++...++++.+.||+|.+. ++|+.+|++|.++|||...+.++... ..++.... ........+.....
T Consensus 102 ~~~~~~~~l~lAa~Vfe~a~egI~ItD~~~~I~~vN~af~~iTGy~~~eviG~n~--~~l~~s~~-~~~~~~~~~~~~l~ 178 (663)
T PRK10060 102 VARDLSHGLSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSV--FKLFMSRR-EAAASRRNIRGFFR 178 (663)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCH--HHHHCCCC-CCHHHHHHHHHHHH
T ss_conf 8999998879999998545864999979999887867977886899999189987--99835755-44889999999997
Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Q ss_conf 58665599999999738944999999632433320023-33445678888999999999999---------------999
Q gi|254780413|r 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN-MPQNGIEPEDVDTRINKRKMEIE---------------VMQ 453 (820)
Q Consensus 390 ~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~-~~~~~~~~dit~~~~~~~~L~~~---------------~~~ 453 (820)
.+.. +..+....+++|.....+.. ....+..+.. ...+....|||++|..+++|+.. .++
T Consensus 179 ~~~~--w~gE~w~r~k~G~~~~~~~~--~~v~~~~~~~~~~~i~~f~DITe~k~~ee~l~~lA~~D~LTgLPNR~~~~~r 254 (663)
T PRK10060 179 SGNA--YEVERWIKTRKGQRLFLFRN--KFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAIQEL 254 (663)
T ss_pred CCCC--EEEEEEEEECCCCEEEEEEE--EEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 4981--89888874058964579887--8776078970699999888804899999999987367742386628999999
Q ss_pred HHHHHHHH---CCHHEEECCCCEEEEEHHHH
Q ss_conf 99999742---20430785998387215689
Q gi|254780413|r 454 LCSILEAT---SDGIAIINREGIILSTNRAV 481 (820)
Q Consensus 454 L~~ile~~---~~gI~~~D~~G~i~~~N~a~ 481 (820)
|...+... ..+|+.+|.|+ +-.+|..+
T Consensus 255 L~~ai~~~~~~~~AvlfiDLD~-FK~INDt~ 284 (663)
T PRK10060 255 IDHAIAQADNNQVGIVYLDLDN-FKKVNDAY 284 (663)
T ss_pred HHHHHHHCCCCCEEEEEEECCC-CCHHHHCC
T ss_conf 9999971769938999997867-68344662
No 76
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=99.09 E-value=6.4e-09 Score=83.29 Aligned_cols=340 Identities=13% Similarity=0.118 Sum_probs=201.0
Q ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCC-----CCCCEEEEECCCCCCCEEEE
Q ss_conf 9997999099966789966289978974996888204016882389999986379-----61671688614798837999
Q gi|254780413|r 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-----TWYGKTTLWPIEGTNLYVPI 161 (820)
Q Consensus 87 w~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~-----~~~~~~~~~~~~g~~~~~~v 161 (820)
--+|.+|-+..|--.=..+.--...++.||.|.|+..+.. ..++...|...- +++-+..+ .+.-++.-+|+
T Consensus 10 L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~~es---~~k~~~~l~~a~~~g~~a~r~~~~~-~~~P~~~ElP~ 85 (453)
T TIGR02040 10 LLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVTEES---KEKVEALLSEAKRTGVGAVRVELNR-FVLPSDLELPM 85 (453)
T ss_pred EEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHH---HHHHHHHHHHCCCCCCCHHHHHHHH-HCCCCCCCCCE
T ss_conf 5551787077644288552414130245884444135778---9999999971468888577776654-11799972440
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 98630015688736305566898522103779999----98632433445430143200233442101444553100110
Q gi|254780413|r 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 (820)
Q Consensus 162 ~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (820)
.....-.-+.+|+-.|.--|| ||.+...+..+. ++..++
T Consensus 86 ~F~~~~L~~sdGk~~~vLa~G--rdLr~vA~lqq~lv~AQ~AmEr----------------------------------- 128 (453)
T TIGR02040 86 EFVLVRLGASDGKDEGVLALG--RDLRAVAELQQRLVEAQQAMER----------------------------------- 128 (453)
T ss_pred EEEEECCCCCCCCCCCEEEEC--CCCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_conf 346761678788887358884--6524789999999999878888-----------------------------------
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 00133441013610122220002101520111000000024402333555421011012223321000110134565455
Q gi|254780413|r 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 (820)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (820)
.-..+++
T Consensus 129 -------------------------------------------------------------------------DYW~lR~ 135 (453)
T TIGR02040 129 -------------------------------------------------------------------------DYWKLRE 135 (453)
T ss_pred -------------------------------------------------------------------------HHHHHHH
T ss_conf -------------------------------------------------------------------------7999866
Q ss_pred HHHHHHHHHHHCCCCEEEEE--CCEEEEECHHHHHHHCCCCH--HHHCCCCCCHHHHCC--CCCCHHHHHHHHHHHHHCC
Q ss_conf 56578999963499789970--99588720688988379844--772246761122024--5545135678999875058
Q gi|254780413|r 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDR 391 (820)
Q Consensus 318 ~~~~~~~ild~lp~gv~i~~--~gri~~~N~a~~~l~G~~~~--e~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~g 391 (820)
.+.+|+.+++-...+|++.+ ++||+-+|+++..++|.... +.|-+. -|.. +..........+...+..|
T Consensus 136 ~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~-----~~~~e~~~~~~~~l~~~l~~~~atg 210 (453)
T TIGR02040 136 METRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGR-----EFPQELEEREREELELLLREVRATG 210 (453)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCC-----HHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 75444335411488679985365347786799999850267750123111-----3431466454368999998643015
Q ss_pred CEEEEEEEEEE-----------EEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66559999999-----------9738944999999632433320023334456788889999999999999999999974
Q gi|254780413|r 392 TCIAASARLHT-----------IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 (820)
Q Consensus 392 ~~~~~~~~~~~-----------i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~ 460 (820)
...+....+.. .+.++.+.+.+.+.++......+.. -....-|..+++.
T Consensus 211 ~A~~~~i~l~~~~~~~~v~~s~~r~~~~~~fL~~l~~~~~~~~~~~~--------------------~s~~sml~~l~~~ 270 (453)
T TIGR02040 211 KAAEVRILLAESRKELLVVVSLFRQDSESLFLVRLSPAGASAAVGDV--------------------LSENSMLAKLVEE 270 (453)
T ss_pred CCCCCEEEECCCCCCEEEEEEEEECCCCCHHHEEECCCCCCCCCCCC--------------------CCCHHHHHHHHHH
T ss_conf 77871787457887317887764023664101130311244677776--------------------6742789999974
Q ss_pred HCCHHEEECCCCEEEEEHHHHHHHHCCC-HHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 2204307859983872156899884896-032078644334564562778999998860698402234888763897289
Q gi|254780413|r 461 TSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 (820)
Q Consensus 461 ~~~gI~~~D~~G~i~~~N~a~~~l~G~~-~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (820)
+||+|+.+|.+|+|..+|.+|.++...+ ++.+.|+.+..++.-.. -...-.+..+...|....+.-.+.+..+...-+
T Consensus 271 ~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v~G~~L~~wL~R~~-vDL~Vll~nl~~~G~vrLyAt~L~~~~Ga~~~v 349 (453)
T TIGR02040 271 APDAIVVVDADGRIKRANEAFLELVEVSSKEAVRGRTLDRWLGRSG-VDLAVLLSNLRRTGQVRLYATTLKGELGAETEV 349 (453)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCC-HHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
T ss_conf 2987999778873288889999898717754531332355416775-338987762421685367631100243530368
Q ss_pred EEEEEEEECCCCCEEEEEEEEHHHHHH
Q ss_conf 999998871788739999865144443
Q gi|254780413|r 540 SLRIIIKKLPFSSCYSLTMHDISEWKQ 566 (820)
Q Consensus 540 ~~~~~~~~~~~~~~~~~v~~Dite~k~ 566 (820)
.++.+.....+.+.++.++|||..+-.
T Consensus 350 EISAa~~~~~~~P~lvl~iRdisRrl~ 376 (453)
T TIGR02040 350 EISAAAVDQGERPKLVLVIRDISRRLT 376 (453)
T ss_pred HHHHHHHCCCCCCEEEEEEECHHHHCC
T ss_conf 778787438998369998701234302
No 77
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=99.07 E-value=4.4e-10 Score=91.81 Aligned_cols=64 Identities=42% Similarity=0.666 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999852345317489999999999731268778889999999999989999999999999866
Q gi|254780413|r 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 (820)
Q Consensus 583 ~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sr 649 (820)
.++.+|++.+||||||||++|+|+++++.+.... .+.+.++++.|.++.+++..+|+++|++||
T Consensus 2 ~~~~~~~a~iaHelrtPL~~i~~~~~~l~~~~~~---~~~~~~~~~~i~~~~~~l~~lv~~~l~~~~ 65 (65)
T cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLD---DEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3599999987298704888886014898856688---699999999999999999999999998609
No 78
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.07 E-value=2.6e-09 Score=86.09 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=92.9
Q ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 5999979990999667899662899789749968882040168823-899999863796167168861479883799998
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~l 163 (820)
+||--|++|+|.-+|++|+.++|++.++++|++..|+..+...+-. ..=.+++..+.+...+.-.-..||. ..++++
T Consensus 167 li~~rd~~g~f~gCNrafe~~~G~~e~eliG~t~~d~~~~e~a~~~~~~D~~v~~~~~~~~~e~w~~~~dG~--~~~~e~ 244 (779)
T PRK11091 167 LVYYRNEDGEFSGCNRAMELLTGKSEKQLVGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGR--KACFEL 244 (779)
T ss_pred CEEEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC--EEEEEE
T ss_conf 157877987653410999988099989984998355279988999997389998647982111346648986--678998
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHH-HHHHHHHHHHHHHCCCC
Q ss_conf 6300156887363055668985221037799999-86324334454301432
Q gi|254780413|r 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-KRLDKKFSHLHEIKKGH 214 (820)
Q Consensus 164 s~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~ 214 (820)
.-.|.||..|++.|.-| +.||+++++++++.. .....+..-++...+..
T Consensus 245 ~k~P~~d~~g~~~G~~g--~~rDITerk~aeeaLE~AsraKS~FLAnMSHEI 294 (779)
T PRK11091 245 RKVPFYDRVGKRHGLMG--FGRDITERKRYQDALEKASRDKTTFISTISHEL 294 (779)
T ss_pred EEEEEECCCCCEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64013538997887863--001601778999999999999999998726875
No 79
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.04 E-value=2.7e-10 Score=93.38 Aligned_cols=299 Identities=14% Similarity=0.077 Sum_probs=183.8
Q ss_pred CCCCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCC---HHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 57789810599997999099966789966289978974996888204016882---389999986379616716886147
Q gi|254780413|r 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGKTTLWPIE 153 (820)
Q Consensus 77 ~~~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p---~~~i~~~l~~~~~~~~~~~~~~~~ 153 (820)
....-|+- |=-||---.+.|+|.+|.+++||.++|+|||+=+-+++.- .| ...++..|++..+|+|+-+++++|
T Consensus 9 tVdqAp~A-ISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~t--TPpeVYQaLWg~la~qkPW~G~LlNRrkD 85 (496)
T TIGR02938 9 TVDQAPVA-ISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRT--TPPEVYQALWGSLAEQKPWAGKLLNRRKD 85 (496)
T ss_pred HHHHCCCE-EEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf 66228803-6431014569999566321558656211125540126858--87179999998863058986510000116
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98837999986300156887363055668985221037799999863243344543014320023344210144455310
Q gi|254780413|r 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 (820)
Q Consensus 154 g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (820)
|+.|- -+|+..|+.|..|+-+.|- |..|++++.-..++..
T Consensus 86 g~lYL--AeLtvaPvlneaGeT~hfl--GMHRd~tElh~Leq~V------------------------------------ 125 (496)
T TIGR02938 86 GELYL--AELTVAPVLNEAGETTHFL--GMHRDVTELHRLEQRV------------------------------------ 125 (496)
T ss_pred CCHHH--HHHCCCCHHCCCCCCEEEE--CCCCCHHHHHHHHHHH------------------------------------
T ss_conf 53002--2202020001468815873--2545435788998889------------------------------------
Q ss_pred CCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 01100013344101361012222000210152011100000002440233355542101101222332100011013456
Q gi|254780413|r 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 (820)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (820)
T Consensus 126 -------------------------------------------------------------------------------- 125 (496)
T TIGR02938 126 -------------------------------------------------------------------------------- 125 (496)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCEE-EEECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 545556578999963499789-9709958872068898837984477224676112202455451356789998750586
Q gi|254780413|r 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 (820)
Q Consensus 314 ~~~~~~~~~~~ild~lp~gv~-i~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 392 (820)
..+....+.+++.+|+++. ++..||++.-|+.|+++.- +|........ +... ..+........+....
T Consensus 126 --~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk~La~-----DL~v~epa~~-~l~l-Lre~~~e~~~~~~~q~-- 194 (496)
T TIGR02938 126 --ANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYKKLAS-----DLKVEEPAEL-LLKL-LREELAEDLEELENQE-- 194 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHHHHHH-----HCCCCCCHHH-HHHH-HHHHHHHHHHHHCCCC--
T ss_conf --764678999987865410005699868816776887874-----2141441799-9998-5087652786520211--
Q ss_pred EEEEEEEEEEEEECCCE-EEEEEEEECCCCCCCHHH---------HHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q ss_conf 65599999999738944-999999632433320023---------33445678888999999--------9999999999
Q gi|254780413|r 393 CIAASARLHTIQWNREN-SLAMTFIPFEKANQFPEN---------MPQNGIEPEDVDTRINK--------RKMEIEVMQL 454 (820)
Q Consensus 393 ~~~~~~~~~~i~~~g~~-~~~l~~~~~~~~d~~~~~---------~~~~~~~~dit~~~~~~--------~~L~~~~~~L 454 (820)
..+..+.-++...||+ ..|+++......-..+.. ....-++.||++.|..+ ++|.++|+++
T Consensus 195 -~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~l 273 (496)
T TIGR02938 195 -KAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKL 273 (496)
T ss_pred -CEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -0101540354168878850102023235311364011561689983056636478889999999999989999899888
Q ss_pred HHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 9999742204307859983872156899884896032078644334564562778999998860698402
Q gi|254780413|r 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 (820)
Q Consensus 455 ~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
.++=|+...+|+-+..-=.+ =.+|..++..- +. ..-..+.....++.....|..+.
T Consensus 274 e~~rEtl~AAIhrl~gP~Nl---isaA~~~L~RR--------lG---D~AGn~a~~~~lqqa~~ag~e~~ 329 (496)
T TIGR02938 274 EALRETLSAAIHRLQGPLNL---ISAAISVLERR--------LG---DDAGNDAVAALLQQALAAGREAL 329 (496)
T ss_pred HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHC--------CC---CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88766688888885287107---88999986320--------58---32379799999999988639999
No 80
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.99 E-value=5e-09 Score=84.07 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE----CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5556578999963499789970----995887206889883798447722467611220245545135678999875058
Q gi|254780413|r 316 DEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 (820)
Q Consensus 316 ~~~~~~~~~ild~lp~gv~i~~----~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g 391 (820)
+...+.....+|..|++|.+.. ..+++|+|.+|.+++||...+.++....+ +..+.. .......+.-....+
T Consensus 154 ~~e~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~---lq~~~~-~~e~~~~~~~ai~~~ 229 (674)
T PRK13558 154 ESERRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRF---LQGPKT-NEDRVAEFWTAITED 229 (674)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHH---HCCCCC-CHHHHHHHHHHHHCC
T ss_conf 9999988756640572599846888887438860123653189817864974012---106888-805799999997558
Q ss_pred CEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 66559999999973894499999963243332002333445678888999999999999999999997422043
Q gi|254780413|r 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 (820)
Q Consensus 392 ~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI 465 (820)
....++ ++..+++|. .+|......+..|..+.+.++++...|+++||..+++|+.+.+.|..+++..+..|
T Consensus 230 ~~~~ve--~r~~r~dG~-~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~~L~RiN~LI 300 (674)
T PRK13558 230 HDTQVV--LRNYRRDGS-LFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDRVNGLM 300 (674)
T ss_pred CCCEEE--EEEECCCCC-EEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 863345--333146883-78741245521057885899986214477889999999986889999999999999
No 81
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.79 E-value=4.5e-07 Score=69.78 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHCCCCEE-EEECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCE-E
Q ss_conf 556578999963499789-97099588720688988379844772246761122024554513567899987505866-5
Q gi|254780413|r 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-I 394 (820)
Q Consensus 317 ~~~~~~~~ild~lp~gv~-i~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~-~ 394 (820)
+.....+.+++++.+||. +++.|+++.+|+++.+++||...+.++.. +..++..+.. ..........+.. .
T Consensus 258 ~~~~~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~--~~~l~~~~~~-----~~~~~~~l~~~~~~~ 330 (607)
T PRK11360 258 EARTLNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQP--YSMLFDNTQF-----YSPVLDTLEHGTEHV 330 (607)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCHHH-----HHHHHHHHHCCCCCC
T ss_conf 999989999861046699997999499983899998587978985967--9995795767-----799999985377421
Q ss_pred EEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999973894499999963243332002333445678888999999999999999999
Q gi|254780413|r 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 (820)
Q Consensus 395 ~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ 456 (820)
..+..+ ..+++ ...+.....+..+..+...+.+.+..|+|++++.++++++.+ +|.+
T Consensus 331 ~~~~~~--~~~~~--~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~e-rlaa 387 (607)
T PRK11360 331 ALEISF--PGRDR--TIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARAE-RLAA 387 (607)
T ss_pred CEEEEE--CCCCC--EEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHH-HHHH
T ss_conf 248996--05883--499999985357689858899999995778999999999999-9999
No 82
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.77 E-value=2.2e-07 Score=72.07 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 999999999998888718---89787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r 702 RSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 (820)
Q Consensus 702 ~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL 778 (820)
..++=++---+.|||+|. .+.+.|.|.....++ .+.|.|+|+|.|++++....-..|+...++-. .....||||
T Consensus 41 ~di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~-~l~i~V~D~G~gfD~~~~~~~~~P~~~~~~l~--~~~~gGlGl 117 (158)
T PRK04069 41 EDLKIAVSEACTNAVQHAYKEEEVGEINIRFEIYED-RLEIVVADNGDSFDYETTKSKIGPYDPSEPID--DLREGGLGL 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-EEEEEEEECCCCCCHHHCCCCCCCCCCCCCHH--HCCCCCCHH
T ss_conf 889999999999999975156999479999999599-99999999174879567432458888888611--136787409
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECC--CCCCCCCCCC
Q ss_conf 99999999619869999788995399999635--7778886569
Q gi|254780413|r 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPHDCI 820 (820)
Q Consensus 779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~--~~~~~p~~~~ 820 (820)
+|.|+|++ ++.++| +.||+++++-=+ .+..+-||||
T Consensus 118 ~lI~~lmD----eV~~~~--~~Gt~v~m~K~l~~~e~~~~~~~~ 155 (158)
T PRK04069 118 FLIETLMD----DVTVYK--DSGVTVSMTKYINREQVENNGERI 155 (158)
T ss_pred HHHHHHCC----EEEEEE--CCCEEEEEEEEECHHHCCCCCCCC
T ss_conf 99997525----589990--898299999996715515676612
No 83
>TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction.
Probab=98.73 E-value=1.2e-07 Score=73.88 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=82.8
Q ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHH-HHHHHHCCC-CCCCEEEE---ECCCCCCCEE
Q ss_conf 599997999099966789966289978974996888204016882389-999986379-61671688---6147988379
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTL---WPIEGTNLYV 159 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~-i~~~l~~~~-~~~~~~~~---~~~~g~~~~~ 159 (820)
.+|.+|.+|+|+++|+++++++||+.++++|+++.++.++.+.+.... +...+..+. ........ .+++|.. .
T Consensus 17 ~~~~~d~~g~~~~~n~~~~~~~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~ 94 (130)
T TIGR00229 17 AIIVVDLEGNILYVNPAFEELFGYSAEELLGRNVLELIPEEDREELRERIERLLETGEREPVSEERRVLGRRKDGSE--I 94 (130)
T ss_pred CEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCE--E
T ss_conf 26887057615750325777617875895387510002764146899999876326754320123466644378968--8
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHH
Q ss_conf 9998630015688736305566898522103779999
Q gi|254780413|r 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 (820)
Q Consensus 160 ~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~ 196 (820)
|++++..|+++..|...++- ++++|++.++..++.
T Consensus 95 ~~~~~~~~~~~~~g~~~~~~--~~~~d~t~~~~~~~~ 129 (130)
T TIGR00229 95 WVEVSVSPIRDSNGGVLGVL--GIVRDITERKEAEEA 129 (130)
T ss_pred EEEEECCCCCCCCCCEEEEE--EEEECHHHHHHHHHC
T ss_conf 99873010000137703677--665211478998850
No 84
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.9e-07 Score=71.18 Aligned_cols=11 Identities=36% Similarity=0.295 Sum_probs=4.4
Q ss_pred CCEEEEECHHH
Q ss_conf 99588720688
Q gi|254780413|r 338 HGNLFYANPSF 348 (820)
Q Consensus 338 ~gri~~~N~a~ 348 (820)
+|.+.++++.-
T Consensus 214 dG~~~vf~r~t 224 (538)
T COG1389 214 DGNLVVFPRST 224 (538)
T ss_pred CCCEEEECCCH
T ss_conf 98678713314
No 85
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=98.62 E-value=1.2e-06 Score=66.53 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=70.8
Q ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 5999979990999667899662899789749968882040168823-899999863796167168861479883799998
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~l 163 (820)
++|.+|.+|+++++|+++++++|++.++++|+++.++.++.+.... ..+...+..+..+..+......+|. ..|+.+
T Consensus 4 ~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~ 81 (103)
T cd00130 4 GVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKDGS--VIWVLV 81 (103)
T ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC--EEEEEE
T ss_conf 899997989899998899998798878916996542455211699999999999749985248999999999--999999
Q ss_pred EEEEEECCCCCEEEEEEEEEEEE
Q ss_conf 63001568873630556689852
Q gi|254780413|r 164 AALPIYSRNREFSGFRGFGIVHV 186 (820)
Q Consensus 164 s~~Pv~d~~g~~~G~rG~gv~r~ 186 (820)
...|+++.++...++.+ ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~d 102 (103)
T cd00130 82 SLTPIRDEGGEVIGLLG--VVRD 102 (103)
T ss_pred EEEEEECCCCCEEEEEE--EEEC
T ss_conf 99999999989999999--9982
No 86
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=3e-06 Score=63.77 Aligned_cols=229 Identities=15% Similarity=0.111 Sum_probs=124.2
Q ss_pred HHHHHHCCCCEEE-EECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 9999634997899-709958872068898837984477224676112202455451356789998750586655999999
Q gi|254780413|r 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 (820)
Q Consensus 323 ~~ild~lp~gv~i-~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 401 (820)
..++++.+.++.+ .....+.++|......++.......+. .+.......... .+. ..........+.
T Consensus 4 ~~~l~~~~~~~~vi~~~~~~~~~~~~a~~~~~~~~~~~i~~--~~~~i~~~~~~~------~v~----~~~~~~~~~~~~ 71 (560)
T COG3829 4 EGILKSILDGPVVIDKNTGIDVANALALAKRQKNAEAVIGR--PLREILETLGME------RVE----QSRDKELTERLK 71 (560)
T ss_pred HHHHHHCCCCEEEEECCCCEEEECHHHHHHHHCCEEEEECC--CHHHHHCCCCCC------EEE----CCCCCCEEEEEE
T ss_conf 44566504640899717754760337776510544787423--411111125862------341----067652013554
Q ss_pred EEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHH
Q ss_conf 997389449999996324333200233344567888899999999-9999999999997422043078599838721568
Q gi|254780413|r 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 (820)
Q Consensus 402 ~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~-L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a 480 (820)
.+ . ....+..-+..+..+.+.++.....++++....-+. |....+.|..+++.+.++++++|.+|.++++|.+
T Consensus 72 --~~-~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~ 145 (560)
T COG3829 72 --LK-V---KRIVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKA 145 (560)
T ss_pred --CC-C---EEEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHH
T ss_conf --06-4---04898178524127744455125451498999999999999999999986256745998699968998477
Q ss_pred HHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECC---CCCEEEEE
Q ss_conf 998848960320786443345645627789999988606984022348887638972899999988717---88739999
Q gi|254780413|r 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLT 557 (820)
Q Consensus 481 ~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v 557 (820)
+..++|+++++++|+++.+++........ ..+...+.+........ ..+.. . .+..++. .-.|.+.+
T Consensus 146 ~~~~~gl~~e~~~gk~~~~v~~~~~~s~~----l~vl~~~kp~~~~~~~~---~~~~~-i--~~~~pv~~~g~l~G~v~~ 215 (560)
T COG3829 146 YAKLLGLSPEEVLGKHLLDVVSAGEDSTL----LEVLRTGKPIRDVVQTY---NGNKI-I--VNVAPVYADGQLIGVVGI 215 (560)
T ss_pred HHHHHCCCHHHHCCCCHHHHHHCCCCCEE----HHHHHCCCCCEEEEEEE---CCCCE-E--EEECCEECCCCEEEEEEE
T ss_conf 89883999899819718988723677410----11341588512035530---48734-6--764447317827889975
Q ss_pred EEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 8651444434576544668878
Q gi|254780413|r 558 MHDISEWKQEKNKLSHAKKIAE 579 (820)
Q Consensus 558 ~~Dite~k~~e~el~~~~~~~e 579 (820)
++|+++.++...++...+..+.
T Consensus 216 ~~~~~~l~~l~~~~~~~~~~~~ 237 (560)
T COG3829 216 SKDVSELERLTRELEESEGLLR 237 (560)
T ss_pred ECCHHHHHHHHHHHHHHHHHHC
T ss_conf 2024888999999998753220
No 87
>TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea, but also in a few eukayotes, such as the plant Arabidopsis thaliana . This enzyme assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein that mediates double-strand DNA breaks during meiotic recombination in eukaryotes . Therefore, though related to type IIA topoisomerases, topoisomerase VI may have a distinctive mechanism of action. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=98.58 E-value=1.3e-07 Score=73.72 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC---EEEEEEEECCC-------CEEEEEEEECCCCCCHHHHHHHC
Q ss_conf 9999999999988887188978---79999998049-------94999999788978988866423
Q gi|254780413|r 702 RSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN-------EEVILRVRDTGVGMTNYELEKAM 757 (820)
Q Consensus 702 ~~l~Qvl~NLl~NAik~t~~gg---~v~v~~~~~~~-------~~v~i~V~DtG~GI~~~~~~~iF 757 (820)
..|-||+--|+.||++|+++-| .|.|++..-++ .+..|.|.|||||||.++++++|
T Consensus 27 RsL~~~ihElVtNSLDAcEEAGILP~I~v~I~~~g~seGrGGr~HY~v~VEDNGPGIP~~~IPkVF 92 (662)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKSEGRGGRDHYKVVVEDNGPGIPEEYIPKVF 92 (662)
T ss_pred HHHHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
T ss_conf 889999999971424676643799840589898527778999962079984078899700013132
No 88
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.53 E-value=2.8e-06 Score=63.94 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=33.6
Q ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCC
Q ss_conf 999979990999667899662899789749968882040168823899999863796
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~~ 142 (820)
|+.+|..|+++.+|++.++++|.+.++++|++..++...++ +.+.+..+..
T Consensus 93 V~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~i~~~~~~~~------~~~~l~~~~~ 143 (513)
T PRK10820 93 VLSIDMKSKVELANPASCQLFGQSEERLRNHTAAQLINGFN------FLRWLESEPQ 143 (513)
T ss_pred EEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHCCCCC------HHHHHHCCCC
T ss_conf 89985998199763999998498968877979999718756------9999862898
No 89
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.48 E-value=2.1e-06 Score=64.88 Aligned_cols=10 Identities=10% Similarity=0.514 Sum_probs=4.0
Q ss_pred CHHHHHHHHH
Q ss_conf 7999999999
Q gi|254780413|r 663 SLDEAVSEAI 672 (820)
Q Consensus 663 dl~~lv~~~~ 672 (820)
++.+.+....
T Consensus 494 ~~~~~~~~i~ 503 (533)
T PRK04184 494 DIEEVLAKLL 503 (533)
T ss_pred CHHHHHHHHH
T ss_conf 0589999999
No 90
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.47 E-value=7.9e-06 Score=60.66 Aligned_cols=109 Identities=8% Similarity=0.101 Sum_probs=76.0
Q ss_pred CCCCCCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 35577898105999979990999667899662899789749968882040168823899999863796167168861479
Q gi|254780413|r 75 VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 (820)
Q Consensus 75 ~~~~~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~~~~~~~~~~~~~g 154 (820)
.|...+-++ --+|.+|+++++|+++++++||+.++++|+++.++.+....+ ...+.+.+..+..+....+.+..+|
T Consensus 12 Il~~~~d~I---iv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (348)
T PRK11073 12 ILNSLINSI---LLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLN-IELMQESLQAGQGFTDNEVTLVIDG 87 (348)
T ss_pred HHHHHHHHH---EEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCC-HHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 998660796---499897970128399999978598998599689984665301-8999999973897413239999899
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHH
Q ss_conf 883799998630015688736305566898522103779999
Q gi|254780413|r 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 (820)
Q Consensus 155 ~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~ 196 (820)
.. .++.++..|+.+ +.+ +...++++..+..++.
T Consensus 88 ~~--~~~~~~~~~~~~--~~~-----l~~~~di~~~k~l~~e 120 (348)
T PRK11073 88 RS--HILSLTAQRLPE--GMI-----LLEMAPMDNQRRLSQE 120 (348)
T ss_pred EE--EEEEEEEEECCC--CEE-----EEEEEECHHHHHHHHH
T ss_conf 69--999999998258--689-----9999962799999999
No 91
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=98.44 E-value=3.7e-06 Score=63.09 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=76.5
Q ss_pred HCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 22043078599838721568998848960320786443345645627789999988606984022348887638972899
Q gi|254780413|r 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 (820)
Q Consensus 461 ~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (820)
.+++|+++|.+|.|+++|+++++++|++++++.|+++..++++++.......+......+... ..+.....++|...+
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~ 78 (103)
T cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPV--TLEVRLRRKDGSVIW 78 (103)
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHEECCHHHHHHHHHHHHHHHCCCCC--EEEEEEECCCCCEEE
T ss_conf 962899997989899998899998798878916996542455211699999999999749985--248999999999999
Q ss_pred EEEEEEECCCC----CEEEEEEEEH
Q ss_conf 99998871788----7399998651
Q gi|254780413|r 541 LRIIIKKLPFS----SCYSLTMHDI 561 (820)
Q Consensus 541 ~~~~~~~~~~~----~~~~~v~~Di 561 (820)
+.....+..+. .+++.+.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~di 103 (103)
T cd00130 79 VLVSLTPIRDEGGEVIGLLGVVRDI 103 (103)
T ss_pred EEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 9999999999998999999999829
No 92
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.43 E-value=8.3e-07 Score=67.82 Aligned_cols=95 Identities=29% Similarity=0.434 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 999999999998888718---89787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r 702 RSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 (820)
Q Consensus 702 ~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL 778 (820)
.-++-++-.=+.|||=|. ..+|.|.|.+...+. .+.++|.|+|+||. .++.+-+|.||+++...| +|+|-
T Consensus 38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~-~~~~~v~D~G~GI~--~lE~A~~PLyTskPeLER----SGMGF 110 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDD-EVSITVRDEGIGIE--NLEEAREPLYTSKPELER----SGMGF 110 (137)
T ss_pred HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECC-EEEEEEEECCCCHH--HHHHHCCCCCCCCCCCCC----CCCCE
T ss_conf 555433322321205314563799778999996054-89999864675723--378532664579987220----67860
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999999619869999788995399999
Q gi|254780413|r 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807 (820)
Q Consensus 779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~ 807 (820)
. +.|.-=-.|.|+|+++.||++.+.
T Consensus 111 T----vME~FMD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 111 T----VMESFMDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred E----EECCCCCCEEEEECCCCCCEEEEE
T ss_conf 1----211124512686238998468875
No 93
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.41 E-value=1.6e-06 Score=65.76 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=65.1
Q ss_pred EEEECHHHHHHHCCCHHHHCCC--CHHHHHCCCCCCCHH-HHHHH-HHCCCCCCCEEEEECCCCCCCEEEEEEEEEEEEC
Q ss_conf 9996678996628997897499--688820401688238-99999-8637961671688614798837999986300156
Q gi|254780413|r 95 LKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNN-HIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 (820)
Q Consensus 95 ~~~vn~~~~~~~G~~~~e~iGr--~~~e~~~~~~~~p~~-~i~~~-l~~~~~~~~~~~~~~~~g~~~~~~v~ls~~Pv~d 170 (820)
++|+|+++++|+||+++++.+. .|.++.||.|.+... .+.+. ...+.+|..+-...+++|+ +.|+..++.|++|
T Consensus 1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~dG~--~~wi~~~~~~~~d 78 (90)
T pfam08447 1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRKDGE--YRWVEARGRPIRD 78 (90)
T ss_pred CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--EEEEEEEEEEEEC
T ss_conf 99999899998499901107998899987190568899988788886058740468999815993--9999999999999
Q ss_pred CCCCEEEEEE
Q ss_conf 8873630556
Q gi|254780413|r 171 RNREFSGFRG 180 (820)
Q Consensus 171 ~~g~~~G~rG 180 (820)
.+|++..+.|
T Consensus 79 ~~G~~~~~~G 88 (90)
T pfam08447 79 ENGKPVRVIG 88 (90)
T ss_pred CCCCEEEEEE
T ss_conf 9999999996
No 94
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=98.32 E-value=0.00045 Score=47.76 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHH
Q ss_conf 33445678888999999999999999999997422043078599838721568998848960320786443345645627
Q gi|254780413|r 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 (820)
Q Consensus 428 ~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~ 507 (820)
...... .+++..+..+..+.....+++.+++..+++++.+|.+|.+.++|+++.+++|+...+..+.............
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 167 (232)
T COG2202 89 LGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEE 167 (232)
T ss_pred HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCCHHHHCCCCCHH
T ss_conf 555301-1157788899998757999999995689679999099989997589999869798998277606540346304
Q ss_pred H-HHHHHHHHHCCCCCCEEEEEEEEECCCCCE-EEEEEEEEECCC---CCEEEEEEEEHHHHHHH
Q ss_conf 7-899999886069840223488876389728-999999887178---87399998651444434
Q gi|254780413|r 508 V-MNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPF---SSCYSLTMHDISEWKQE 567 (820)
Q Consensus 508 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~v~~Dite~k~~ 567 (820)
. .......... ........+.....++|.. ............ ...+.....|+++++..
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 231 (232)
T COG2202 168 RRELELARALAE-GRGGPLEIEYRVRRKDGERVRWILSRISPVRDDGEIVGVVGIARDITERKQA 231 (232)
T ss_pred HHHHHHHHHHHC-CCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHH
T ss_conf 667899999752-4576405899999438979999998731324688577899998734689974
No 95
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=98.27 E-value=1.4e-06 Score=66.05 Aligned_cols=64 Identities=28% Similarity=0.515 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999997422043078599838721568998848960320786443345645627789999988
Q gi|254780413|r 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 (820)
Q Consensus 453 ~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~ 516 (820)
+++.++++++++|+++|.+|+|+++|+++++++||+++++.|+++..++++++.......+...
T Consensus 2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~ 65 (67)
T smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEALQRL 65 (67)
T ss_pred HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 7999999655798588699948998859999889099999599899946998999999999987
No 96
>KOG0519 consensus
Probab=98.23 E-value=3.5e-06 Score=63.26 Aligned_cols=226 Identities=20% Similarity=0.206 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45765446688789999999999852345317489999999999731268778889999999999989999999999999
Q gi|254780413|r 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 (820)
Q Consensus 567 ~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd 646 (820)
....+..++++...+..+...++..++|..++|.+.+++...++.....-.. ...--++...++...+..++++-.+
T Consensus 368 ~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~---~~~~~i~~~~~~~~~~~~~~q~~~~ 444 (786)
T KOG0519 368 SNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSP---DSGLEIQTVMRSSNVFTSLIQADPD 444 (786)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECC---CCCEEEEECCCCHHHHHHHHCCCHH
T ss_conf 6789975457765351556678887413312422042122357665202236---6640685023304655545146610
Q ss_pred HHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHH--CCCCCC
Q ss_conf 8664318852000331799999999999999987378089997379884-6898889999999999988887--188978
Q gi|254780413|r 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH--FTPSGG 723 (820)
Q Consensus 647 ~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik--~t~~gg 723 (820)
.++...|..........|..++.............+...+...+..+.| .+.+|..++.|++.+..+|+.+ ++..|.
T Consensus 445 ~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 524 (786)
T KOG0519 445 ITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGR 524 (786)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 03456876453322232889988674321100347522233123568873101103445445554301222320033576
Q ss_pred EEEEEEEEC----------------------C-CCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 799999980----------------------4-99499999978897898886642377187347876667888606899
Q gi|254780413|r 724 QIIISTTHT----------------------S-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 (820)
Q Consensus 724 ~v~v~~~~~----------------------~-~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai 780 (820)
....+.-.. . +-++++.+.++..++........|.-|-+......+...+-++.|+.
T Consensus 525 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (786)
T KOG0519 525 EQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLAL 604 (786)
T ss_pred CEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 20699980126654111443105666436661002442233103034677772045655400345420024555420123
Q ss_pred HHHHHHHCCCEEEEE
Q ss_conf 999999619869999
Q gi|254780413|r 781 AKAMVDANMGKFYIF 795 (820)
Q Consensus 781 ~k~iVe~hgG~i~v~ 795 (820)
|+..++.+.|.+++.
T Consensus 605 ~~~~~~~~~~~~~~~ 619 (786)
T KOG0519 605 CPENSQLMEGNIGLV 619 (786)
T ss_pred CHHHHHHHHCCCCCC
T ss_conf 656777753143355
No 97
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.20 E-value=3.9e-06 Score=62.88 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHC-CCCCCEEEEEE
Q ss_conf 8899999999999888871-88978799999
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHF-TPSGGQIIIST 729 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~-t~~gg~v~v~~ 729 (820)
+...++.++.+|-.----| +|.|-++.+..
T Consensus 570 s~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l 600 (612)
T PRK00095 570 TLEEMNALLRQLEATENPGTCPHGRPTYIEL 600 (612)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
T ss_conf 9999999999997289969598999288993
No 98
>pfam10090 DUF2328 Uncharacterized protein conserved in bacteria (DUF2328). Members of this family of hypothetical bacterial proteins have no known function.
Probab=98.18 E-value=0.00079 Score=46.01 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997312687788899999999999899999999999998664318852000331799999999999999987
Q gi|254780413|r 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 (820)
Q Consensus 601 ~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~ 680 (820)
.+|....|+|.+... +..++.++.|..|+.....- |-|-|+-=|.-. .-+.++++++-.-+...+ .
T Consensus 2 GAI~NGLELL~~~~~-----~~~~~~m~LI~~Sa~~A~aR----l~F~RlAfGaag-~~~~i~~~e~~~~~~~~~----~ 67 (181)
T pfam10090 2 GAIVNGLELLDDEGD-----PEMGPEMALIRESARNASAR----LRFFRLAFGAAG-AGQQIDLAEAKSVLEGYL----A 67 (181)
T ss_pred CCHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHH----HHHHHHHHCCCC-CCCCCCHHHHHHHHHHHH----H
T ss_conf 312555888707898-----64168999999999999999----999999808468-888569999999999998----3
Q ss_pred HCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 37808999737988468988899999999999888871889787999999804994999999788978988866423771
Q gi|254780413|r 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 681 ~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
..++.+.+.++.+. . +...-|+++||+-=+..++|.||.|.|......++.+.++-+=.-+.++++...-+=-.=
T Consensus 68 ~~r~~l~W~~~~~~----~-~k~~vklllnl~l~~~~AlprGG~i~V~~~~~~~~~~~v~a~g~r~~~~~~~~~~L~g~~ 142 (181)
T pfam10090 68 GGRITLDWQLERDL----L-PKPEVKLLLNLLLIAEDALPRGGEIDVGEGSDGAGGWRVTAEGERLRIDPDLWAALAGGA 142 (181)
T ss_pred CCCEEEEECCCCCC----C-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf 88538983587454----8-879999999999999975477877899984178975999997046789978999856999
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 87347876667888606899999999619869999788
Q gi|254780413|r 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 (820)
Q Consensus 761 ~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p 798 (820)
.......--.=-++...+++..|++|.++...
T Consensus 143 ------~~~~l~~~~VQ~~~l~~la~~~G~~l~~~~~~ 174 (181)
T pfam10090 143 ------PEEELDARNVQFYLLPLLAREAGGTLSYEITE 174 (181)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf ------87789987649999999999869911788649
No 99
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.07 E-value=0.00015 Score=51.34 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHEEECC-CCEEEEEHHHHHHHHCCCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999742204307859-98387215689988489603---207864433456456277899999886
Q gi|254780413|r 442 INKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVE---DILRKPFTVFLEQNTPSVMNHYLTEIL 517 (820)
Q Consensus 442 ~~~~~L~~~~~~L~~ile~~~~gI~~~D~-~G~i~~~N~a~~~l~G~~~~---el~g~~~~~~~~~~~~~~~~~~~~~~~ 517 (820)
+...++|+-|.|||.+||.+.++|+++|. +|+|+.+|++|..++|.... .++|++|..-+.......+...+..+.
T Consensus 128 rDYW~lR~~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l~~~l~~~~ 207 (453)
T TIGR02040 128 RDYWKLREMETRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREELELLLREVR 207 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 87999866754443354114886799853653477867999998502677501231113431466454368999998643
Q ss_pred CCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEE
Q ss_conf 0698402234888763897289999998871788739999
Q gi|254780413|r 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 (820)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 557 (820)
..|..... ++......+.+. +..+..+....+.|++-
T Consensus 208 atg~A~~~--~i~l~~~~~~~~-v~~s~~r~~~~~~fL~~ 244 (453)
T TIGR02040 208 ATGKAAEV--RILLAESRKELL-VVVSLFRQDSESLFLVR 244 (453)
T ss_pred HCCCCCCC--EEEECCCCCCEE-EEEEEEECCCCCHHHEE
T ss_conf 01577871--787457887317-88776402366410113
No 100
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.98 E-value=0.00014 Score=51.55 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCC
Q ss_conf 8899999999999888871889----787999999804994999999788978988866423771873478766678886
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t~~----gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtG 775 (820)
|..+++-++.-++.||++|.-+ .|+|.|+....+ +.+.+.|.|.|+||. ..++.|.|-+.+... . ..-|
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~-~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~--~--~~~G 109 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD-GKLEIRIWDQGPGIE--DLEESLGPGDTTAEG--L--QEGG 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CEEEEEEEECCCCCC--CHHHHCCCCCCCCCC--C--CCCC
T ss_conf 99999999999998999976303899865999999709-939999995798987--888853888888875--3--2473
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCC---CEEEEEEEC
Q ss_conf 0689999999961986999978899---539999963
Q gi|254780413|r 776 LGLPLAKAMVDANMGKFYIFSTPAK---GTLIEIIFP 809 (820)
Q Consensus 776 LGLai~k~iVe~hgG~i~v~S~pG~---Gt~f~v~lP 809 (820)
+||.+.++++ .++.+++.++. +|+++..=|
T Consensus 110 ~Gl~l~~~~~----D~~~~~~~~~~~~~~~~~~~~~~ 142 (146)
T COG2172 110 LGLFLAKRLM----DEFSYERSEDGRNRLTKITLRKR 142 (146)
T ss_pred CCHHHHHHHH----EEEEEEEECCCCEEEEEEEECCC
T ss_conf 1378886211----07999960698558999996243
No 101
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=97.76 E-value=9.6e-05 Score=52.71 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEEC
Q ss_conf 99999999998888718897879999998049949999997889789888664237718734
Q gi|254780413|r 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 (820)
Q Consensus 703 ~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~ 764 (820)
+.--|+-=||-||+++-.. .|.|. ...+|.=.|+|+|||.||+++.++-+.+||+|-|
T Consensus 22 ~p~~vVKELvENSLDAGAt--~I~v~--~~~gG~~~I~V~DNG~Gi~~~d~~~~~~~haTSK 79 (367)
T TIGR00585 22 RPASVVKELVENSLDAGAT--KIEVE--IEEGGLKLIEVSDNGSGIDKEDLELACERHATSK 79 (367)
T ss_pred HHHHHHHHHHHHHHCCCCC--EEEEE--EEECCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 2799999988731214885--89999--9626535899997785677777998612357763
No 102
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=97.74 E-value=3.4e-05 Score=55.97 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=40.0
Q ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCC
Q ss_conf 5999979990999667899662899789749968882040168
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~ 127 (820)
++|.+|.+|+++++|+++++++||+.++++|+++.++.++.+.
T Consensus 13 ~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~ 55 (67)
T smart00091 13 GIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDR 55 (67)
T ss_pred HHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHH
T ss_conf 9858869994899885999988909999959989994699899
No 103
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=97.66 E-value=0.0002 Score=50.36 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=60.3
Q ss_pred EEEEHHHHHHHHCCCHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCC
Q ss_conf 8721568998848960320786--44334564562778999998860698402234888763897289999998871788
Q gi|254780413|r 474 ILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 (820)
Q Consensus 474 i~~~N~a~~~l~G~~~~el~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (820)
+++||++++++|||+++++.+. .+...++|++.+.+...+....... ...++.+.+.+.++|.+.|+......+.+.
T Consensus 1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~-~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~ 79 (90)
T pfam08447 1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKK-GEPYSGEYRIRRKDGEYRWVEARGRPIRDE 79 (90)
T ss_pred CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCEEEEEEEEEEEECC
T ss_conf 9999989999849990110799889998719056889998878888605-874046899981599399999999999999
Q ss_pred CE
Q ss_conf 73
Q gi|254780413|r 552 SC 553 (820)
Q Consensus 552 ~~ 553 (820)
.|
T Consensus 80 ~G 81 (90)
T pfam08447 80 NG 81 (90)
T ss_pred CC
T ss_conf 99
No 104
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.62 E-value=0.0015 Score=43.94 Aligned_cols=117 Identities=12% Similarity=0.113 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 1013456545556578999963499789970-995887206889883798447722467611220245545135678999
Q gi|254780413|r 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 (820)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~ 385 (820)
+.....+.+.....+++..++.+|+||++.+ .|++.++|+++.+++||...++.+.. +..++..|.... .
T Consensus 85 ~~~~~~~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G~~~~~~~G~~--I~~Lir~p~f~~-------~ 155 (431)
T PRK11006 85 RNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGLRWPEDNGQN--ILNLLRYPEFTQ-------Y 155 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHCCCC--HHHHHCCHHHHH-------H
T ss_conf 8799999999999999999964897699998999588356999998389983326997--789808845999-------9
Q ss_pred HHHHCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 875058665599999999738944999999632433320023334456788889999999
Q gi|254780413|r 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 (820)
Q Consensus 386 ~~~~~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~ 445 (820)
+... ....+.+. ....++.+.+.+.+.. ++. ...+.+|+|+.++.++
T Consensus 156 ~~~~-~~~~p~~~-----~~~~~~~le~~~~p~~--~~~-----~llv~rDiT~~~~lE~ 202 (431)
T PRK11006 156 LKTR-DFSRPLNL-----VLNNGRHLEIRVMPYT--EGQ-----LLMVARDVTQMHQLEG 202 (431)
T ss_pred HHCC-CCCCCEEE-----ECCCCCEEEEEEEECC--CCC-----EEEEEEECCHHHHHHH
T ss_conf 8626-65576255-----4388747999997737--995-----8999985659999999
No 105
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.0087 Score=38.37 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=124.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHH
Q ss_conf 99852345317489999999999731268778889999999999989999999999999866431885200033179999
Q gi|254780413|r 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 (820)
Q Consensus 588 fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~l 667 (820)
+.+.+-|||=.|..+|..-.++|.+ |.. + .+.++.|+.|++.+ .+.|.|.|+.=|.---.-..+|-.+.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLde---g~a-d---dDAm~LIrsSArna----s~rLqFaR~AFGAsgSag~~iDtgea 86 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDE---GGA-D---DDAMDLIRSSARNA----SVRLQFARLAFGASGSAGASIDTGEA 86 (214)
T ss_pred HHHHHHHHCCCCHHHHHCHHHHHCC---CCC-C---HHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 9998875404817776032566426---896-4---78999999976517----88877889872555543335660669
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 99999999999873780899973798846898889999999999988887188978799999980499499999978897
Q gi|254780413|r 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 (820)
Q Consensus 668 v~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~G 747 (820)
=.-+...+. ..+-++.++.+.. ++. ..+ -..++||+-=|--+.|.||.+.|... .....-+|++.-.|+=
T Consensus 87 ek~A~~~~a----~ekpe~~W~g~r~---~~~-Kn~-vkllLNl~lia~~aiPrGG~~~vtle-~~e~d~rfsi~akG~m 156 (214)
T COG5385 87 EKAAQDFFA----NEKPELTWNGPRA---ILP-KNR-VKLLLNLFLIAYGAIPRGGSLVVTLE-NPETDARFSIIAKGRM 156 (214)
T ss_pred HHHHHHHHH----CCCCCCCCCCCHH---HCC-CCH-HHHHHHHHHHHCCCCCCCCEEEEEEE-CCCCCCEEEEEECCCC
T ss_conf 999999986----2387123558742---247-505-89999999997055788982689953-6776743899832753
Q ss_pred --CCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf --89888664237718734787666788860689999999961986999978899539999963
Q gi|254780413|r 748 --MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 (820)
Q Consensus 748 --I~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP 809 (820)
.||+.++-+-- .+. .+.-++.-.-=+-+--++|.-|++|.|++. ++--.|+-..|
T Consensus 157 ~Rvppk~lel~~G----~~~--eE~vdahsVQpyYt~lLa~eAgm~I~v~~~-~e~iv~~A~v~ 213 (214)
T COG5385 157 MRVPPKFLELHSG----EPP--EEAVDAHSVQPYYTLLLAEEAGMTISVHAT-AERIVFTAWVV 213 (214)
T ss_pred CCCCHHHHHHHCC----CCC--CCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CCEEEEEEECC
T ss_conf 4479899865059----984--224787530399999999970986899963-64379997514
No 106
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00033 Score=48.78 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9999999999866431885200033179999999999999
Q gi|254780413|r 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 (820)
Q Consensus 637 l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~ 676 (820)
...+|.++++...- |+ ..++....++++..+.
T Consensus 553 ~~~~i~~l~~~~~~--~~------~~~~~~~~~~~~a~~a 584 (638)
T COG0323 553 VQELIRELLDDLLE--GK------LKDLKELLEELAATMA 584 (638)
T ss_pred HHHHHHHHHHHHHH--CC------CCHHHHHHHHHHHHHH
T ss_conf 68899999997640--45------4105679999999999
No 107
>KOG3558 consensus
Probab=97.41 E-value=0.00052 Score=47.34 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=23.8
Q ss_pred CCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9983872156899884896032078644334564562778999998860698
Q gi|254780413|r 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 (820)
Q Consensus 470 ~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (820)
.|-+|+||.....++.||.+++++|+.+.+++|.++-..+..-...+...|.
T Consensus 282 ~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~KGQ 333 (768)
T KOG3558 282 LDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHDLLTKGQ 333 (768)
T ss_pred CCEEEEEECHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4516888735678876479788626048876337656677888999975474
No 108
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.36 E-value=0.0068 Score=39.15 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 99999999997422043078599838721568998848960320786443345645627789999988606984022348
Q gi|254780413|r 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 (820)
Q Consensus 449 ~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (820)
.++..|++++|+++|||+.+|..|+|+.+|++++++||.+.+++.|+++..++...... . ....+........
T Consensus 77 r~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~i~~~~~~~~~~---~----~l~~~~~~~~~~~ 149 (513)
T PRK10820 77 REHLALSALLEALPEPVLSIDMKSKVELANPASCQLFGQSEERLRNHTAAQLINGFNFL---R----WLESEPQDSHNEH 149 (513)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHCCCCCHH---H----HHHCCCCCCCCEE
T ss_conf 68889999997389978998599819976399999849896887797999971875699---9----9862898766359
Q ss_pred EEEECCCCCEEEEEEEEEECCCCC------EEEEEEEEHHHHHHH
Q ss_conf 887638972899999988717887------399998651444434
Q gi|254780413|r 529 TLGSTKEEKLLSLRIIIKKLPFSS------CYSLTMHDISEWKQE 567 (820)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~Dite~k~~ 567 (820)
+.. .+..+.+..++....++. |.+.+++|.++..+.
T Consensus 150 ~~~---~~~~~~~~~~pi~~~~~~~~~~~~GaV~~lk~~~~~~~~ 191 (513)
T PRK10820 150 VVI---NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQ 191 (513)
T ss_pred EEE---CCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHHHHH
T ss_conf 987---696789997678752778860366689882468999999
No 109
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.33 E-value=0.016 Score=36.47 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=21.8
Q ss_pred HHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCC
Q ss_conf 9997422043078599838721568998848960320786443345
Q gi|254780413|r 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 (820)
Q Consensus 456 ~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~ 501 (820)
.++++..++++.+|.+|+|+.+|+.+.+++|.+...+.|+++..++
T Consensus 207 ~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~~~~~~~g~~~~~~~ 252 (639)
T PRK11388 207 ALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITELL 252 (639)
T ss_pred HHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCCHHHHH
T ss_conf 8864887628998899917400489998859884564476499870
No 110
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.32 E-value=0.0023 Score=42.55 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9999999999999866431885200033179999999999999
Q gi|254780413|r 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 (820)
Q Consensus 634 ~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~ 676 (820)
-..+..+++.|+|-++|.+|- ..-|.+.-+..+-.+|+
T Consensus 628 d~~~kd~a~lL~D~AlL~eG~-----~leDP~~fa~Rin~Ll~ 665 (701)
T PTZ00272 628 DKAVKDLVFLLFDTSLLTSGF-----QLEDPTGYAERINRMIK 665 (701)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHH
T ss_conf 388999999999888986899-----97798999999999999
No 111
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.26 E-value=0.002 Score=43.10 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=19.2
Q ss_pred HHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCC
Q ss_conf 99999742204307859983872156899884896032078644334564
Q gi|254780413|r 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 (820)
Q Consensus 454 L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~ 503 (820)
|.+++++.+++|+.+|..|.+..+|++++++||.+.+++.|++...++..
T Consensus 82 L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~~~~~~g~~~~~l~~~ 131 (511)
T COG3283 82 LSALLEALPEPVLSVDMKGKVDMANPAACQLFGRKEDRLRGHTAAQLING 131 (511)
T ss_pred HHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCCHHHHCCCCHHHHCCC
T ss_conf 99999718875687527774332588999984888354057569986386
No 112
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.21 E-value=0.014 Score=36.78 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=28.0
Q ss_pred HHHHHHHCCCCEE-EEECCEEEEECHHHHHHHCCC
Q ss_conf 8999963499789-970995887206889883798
Q gi|254780413|r 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK 355 (820)
Q Consensus 322 ~~~ild~lp~gv~-i~~~gri~~~N~a~~~l~G~~ 355 (820)
...+++++..||+ ++..|+++.+|+++.++++..
T Consensus 223 r~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~ 257 (541)
T PRK11086 223 RQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKK 257 (541)
T ss_pred HHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCC
T ss_conf 99998530016999758987999849999874335
No 113
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.09 E-value=0.011 Score=37.71 Aligned_cols=145 Identities=10% Similarity=0.036 Sum_probs=87.5
Q ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEEE
Q ss_conf 99979990999667899662899789749968882040168823899999863796167168861479883799998630
Q gi|254780413|r 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 (820)
Q Consensus 87 w~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls~~ 166 (820)
-.+|...+|+++|.-...+.+-....++|+...++......+- ..++++--........ + ..+.++..
T Consensus 15 ~vi~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~i~~~~~~~~------v~~~~~~~~~~~~~~~--~----~~~~~~~~ 82 (560)
T COG3829 15 VVIDKNTGIDVANALALAKRQKNAEAVIGRPLREILETLGMER------VEQSRDKELTERLKLK--V----KRIVVVGK 82 (560)
T ss_pred EEEECCCCEEEECHHHHHHHHCCEEEEECCCHHHHHCCCCCCE------EECCCCCCEEEEEECC--C----EEEEECCC
T ss_conf 8997177547603377765105447874234111111258623------4106765201355406--4----04898178
Q ss_pred EEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 01568873630556689852210377999998632433445430143200233442101444553100110001334410
Q gi|254780413|r 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 (820)
Q Consensus 167 Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (820)
++.|..+++.|+- .+..++++
T Consensus 83 ~~~~~~~~~~g~~--~~~~~~~e--------------------------------------------------------- 103 (560)
T COG3829 83 TPVDEQGRVVGVL--EVFLDISE--------------------------------------------------------- 103 (560)
T ss_pred CEEECCCCEEEEE--HHHHHHHH---------------------------------------------------------
T ss_conf 5241277444551--25451498---------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 13610122220002101520111000000024402333555421011012223321000110134565455565789999
Q gi|254780413|r 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 (820)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (820)
..... .. .+......+..++
T Consensus 104 --------------------------------------~~~~~---------------------~~-~l~~~~~~l~~il 123 (560)
T COG3829 104 --------------------------------------ALELI---------------------EE-NLRQLRQRLEAIL 123 (560)
T ss_pred --------------------------------------HHHHH---------------------HH-HHHHHHHHHHHHH
T ss_conf --------------------------------------99999---------------------99-9999999999998
Q ss_pred HHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCC
Q ss_conf 63499789970-9958872068898837984477224
Q gi|254780413|r 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 (820)
Q Consensus 327 d~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~ 362 (820)
+.+..++++.+ .|.+++.|.++..++|....+.++.
T Consensus 124 ~~~~~~l~vvD~~G~~i~~N~~~~~~~gl~~e~~~gk 160 (560)
T COG3829 124 DSIDDGLLVVDEDGIIIYYNKAYAKLLGLSPEEVLGK 160 (560)
T ss_pred HHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHCCC
T ss_conf 6256745998699968998477898839998998197
No 114
>PRK05218 heat shock protein 90; Provisional
Probab=97.00 E-value=0.0016 Score=43.67 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHH
Q ss_conf 999999999999866431885200033179999999999
Q gi|254780413|r 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 (820)
Q Consensus 635 ~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~ 673 (820)
..+..++..|.|.+.+.+|- .+ =|+.+.+..+-.
T Consensus 577 ~~~~~~~~~Lyd~AlL~~G~-~~----~dp~~f~~r~~~ 610 (612)
T PRK05218 577 AKFKDLAELLYDQALLAEGG-SL----EDPAAFVKRLNE 610 (612)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CC----CCHHHHHHHHHH
T ss_conf 99999999999999986899-96----189999999997
No 115
>KOG0501 consensus
Probab=96.65 E-value=0.01 Score=37.92 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=71.1
Q ss_pred CCCEEEECHHHHHHHCCCHHHHCCCCHH-HHHCCCCCCC--HHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf 9909996678996628997897499688-8204016882--389999986379616716886147988379999863001
Q gi|254780413|r 92 HGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 (820)
Q Consensus 92 eGr~~~vn~~~~~~~G~~~~e~iGr~~~-e~~~~~~~~p--~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls~~Pv 168 (820)
|.-++|.|+.||.+.||..+|+.-++-. -+.+-..-|. -+++++.++.-++-..+...+.+.-+..|+.+. ..|+
T Consensus 39 D~PiVY~NdgFcKlsGY~RAevMQKs~tc~FMyGEltdk~ti~k~~~t~eN~~~~qfEillyKKN~TPvW~~vq--iAPI 116 (971)
T KOG0501 39 DWPIVYCNDGFCKLSGYHRAEVMQKSCTCSFMYGELTDKGTIEKVRQTLENYETNQFEILLYKKNRTPVWLLVQ--IAPI 116 (971)
T ss_pred CCCEEEECCCCHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEE--EECC
T ss_conf 14058834762112474599886256423332013345116999999997543121236766158985599998--4023
Q ss_pred ECCCCCEEEEEEEEEEEECCCHHHHH
Q ss_conf 56887363055668985221037799
Q gi|254780413|r 169 YSRNREFSGFRGFGIVHVNRVDNDPR 194 (820)
Q Consensus 169 ~d~~g~~~G~rG~gv~r~~~~~~~~~ 194 (820)
+.....+.-| .+..+|++.-+++.
T Consensus 117 rNe~d~VVLf--LctFkDIT~~KQPi 140 (971)
T KOG0501 117 RNEKDKVVLF--LCTFKDITALKQPI 140 (971)
T ss_pred CCCCCEEEEE--EEECCCCHHHCCCC
T ss_conf 5777518999--95114644323877
No 116
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=96.61 E-value=0.048 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHH
Q ss_conf 578999963499789970-99588720688988379844772
Q gi|254780413|r 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 (820)
Q Consensus 320 ~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l 360 (820)
.++..+++..+.+++..+ .+.+.++|+++..++|+...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~ 153 (232)
T COG2202 112 ERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEEL 153 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHH
T ss_conf 999999956896799990999899975899998697989982
No 117
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0053 Score=39.97 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999998664318
Q gi|254780413|r 635 NLVLDIVNDLLDISKIESG 653 (820)
Q Consensus 635 ~~l~~li~dlLd~srieaG 653 (820)
..+.++++-|+|-+.+-.|
T Consensus 583 ~~~~~~~~ll~dqAll~eg 601 (623)
T COG0326 583 ASVADLVELLYDQALLAEG 601 (623)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 7899999999998998689
No 118
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=96.51 E-value=0.035 Score=33.95 Aligned_cols=99 Identities=9% Similarity=0.080 Sum_probs=68.2
Q ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEE--EEECCCCCCCEEEEEE
Q ss_conf 99997999099966789966289978974996888204016882389999986379616716--8861479883799998
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT--TLWPIEGTNLYVPIDL 163 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~~~~~~~--~~~~~~g~~~~~~v~l 163 (820)
|--+|.+|.+.|+|++.++++|....+-.|++...+.-. ..+.+.|+.+.. ..++ +..+.....-...+++
T Consensus 19 vv~ld~~~~I~W~N~~A~~~LGl~~p~D~Gq~i~~l~R~------P~F~~yl~~~~~-t~~p~~L~~~~~p~~~~~~l~~ 91 (339)
T TIGR02966 19 VVVLDEEGQIEWCNKAAERLLGLRWPDDLGQRITNLIRH------PEFVEYLAAGRF-TSEPEQLELPDSPINEERVLEI 91 (339)
T ss_pred EEEECCCCCEEEEEHHHHHHCCCCCCHHHCCCHHHHCCC------HHHHHHHHCCCC-CCCCCCEEECCCCCCCCCEEEE
T ss_conf 999728983786214889862742734507702121057------679999733555-5788531104688886647999
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHH
Q ss_conf 63001568873630556689852210377999998
Q gi|254780413|r 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 (820)
Q Consensus 164 s~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~ 198 (820)
...|. +.+..+ -|+||++..++.++..+
T Consensus 92 r~~PY-~~~~~L------l~~RDvT~l~rLe~mRr 119 (339)
T TIGR02966 92 RIMPY-GEEQKL------LVARDVTRLRRLEQMRR 119 (339)
T ss_pred EEEEE-CCCCEE------EEEECHHHHHHHHHHHH
T ss_conf 99975-698379------99876368999986534
No 119
>KOG1229 consensus
Probab=96.43 E-value=0.0016 Score=43.67 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=69.3
Q ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCC--CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 99997999099966789966289978974996888204016--8823899999863796167168861479883799998
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~--~~p~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~l 163 (820)
|=..|.+-.+.||||+|++|+||...|++|+...|+.-... .|--+-+.-.+..|-.|+|+....++.|...-..+-
T Consensus 170 iEI~~ddhViQYVNpAfE~mmG~hkgEliGke~adlpkkdknradlldtintcikkgke~qG~~~aRRksgdS~dqh~~- 248 (775)
T KOG1229 170 IEICDDDHVIQYVNPAFENMMGCHKGELIGKEEADLPKKDKNRADLLDTINTCIKKGKEAQGEEEARRKSGDSCDQHFI- 248 (775)
T ss_pred HEECCCHHHHHHHCHHHHHHHCCHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEE-
T ss_conf 2004634689873578886331010212377222256210003666556667653182001368886424775243178-
Q ss_pred EEEEEECCCCCEEEEEE
Q ss_conf 63001568873630556
Q gi|254780413|r 164 AALPIYSRNREFSGFRG 180 (820)
Q Consensus 164 s~~Pv~d~~g~~~G~rG 180 (820)
..|+-...|.+..|..
T Consensus 249 -itP~~gqggkirhfvs 264 (775)
T KOG1229 249 -ITPFAGQGGKIRHFVS 264 (775)
T ss_pred -EEEECCCCCCEEEEHH
T ss_conf -7200477873111010
No 120
>KOG3561 consensus
Probab=96.29 E-value=0.0057 Score=39.71 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=59.0
Q ss_pred EEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 07859983872156899884896032078644334564562778999998860698402234888763897289999998
Q gi|254780413|r 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 (820)
Q Consensus 466 ~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (820)
.-...+|.++++-.....+.||...++.|+.....+++++.......+..+...-.. ....-..++.+++.+++.....
T Consensus 376 sr~~~~g~~~~~dqr~~~i~~~~~~~~~g~ss~~s~h~~d~~~~~~s~~~~~~~s~~-~~~~~yr~~~~n~~~~~~~~~~ 454 (803)
T KOG3561 376 SRSSSDGSFTFVDQRASAILGYQPQELLGRSSYESSHPADSSPLSESLKQVQALSEQ-RSTLLYRFRSKNGSSIPNKSSA 454 (803)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 046767862014556442236685433276630025755543012469999870466-5432224546788754344553
No 121
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.25 E-value=0.1 Score=30.63 Aligned_cols=125 Identities=10% Similarity=-0.024 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEE-EECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 4565455565789999634997899-709958872068898837984477224676112202455451356789998750
Q gi|254780413|r 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 (820)
Q Consensus 311 ~~~~~~~~~~~~~~ild~lp~gv~i-~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 389 (820)
++.-.+.+.+++..++..+..||+. .+.|+++..|..+.+++|....++++.. -++ ++.- .+... ...+...
T Consensus 102 aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~-i~e-lL~i---~d~y~--~~dL~e~ 174 (459)
T COG5002 102 AQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRS-ILE-LLKI---EDTYT--FEDLVEK 174 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCC-HHH-HHCC---CCCEE--HHHHHHC
T ss_conf 987678888889989998707657645778689935079998486778771653-788-8577---54302--8888725
Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 586655999999997389449999996324333200233344567888899999999999
Q gi|254780413|r 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 (820)
Q Consensus 390 ~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~ 449 (820)
.+.. -.. ..+++..+.+.+.....+...+...+......|.|++.+.+++.+.
T Consensus 175 ~~s~---lld----~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe 227 (459)
T COG5002 175 NDSL---LLD----SSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE 227 (459)
T ss_pred CCCE---EEE----ECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 9828---986----0478863799998888851146644069987314387888999999
No 122
>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=96.18 E-value=0.088 Score=31.02 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=70.7
Q ss_pred HHHHHHHHCCHHEEEC--CCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 9999974220430785--99838721568998848960320786443345645627789999988606984022348887
Q gi|254780413|r 454 LCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 (820)
Q Consensus 454 L~~ile~~~~gI~~~D--~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (820)
++.++ ..|+.|+.++ .+-.++|.|+++.+||+++-+++.+.|....+.+..+......+..+...|....+. -+.
T Consensus 34 ~k~L~-~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y~--GiR 110 (148)
T pfam08670 34 LKALW-HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLYS--GVR 110 (148)
T ss_pred HHHHH-CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC--EEE
T ss_conf 99996-399789976799897465414999999668899984596665168352899999899999818633788--168
Q ss_pred ECCCCCEEEEEE-EEEECCCC
Q ss_conf 638972899999-98871788
Q gi|254780413|r 532 STKEEKLLSLRI-IIKKLPFS 551 (820)
Q Consensus 532 ~~~~~~~~~~~~-~~~~~~~~ 551 (820)
..+.|+.+.+.. ++..+.++
T Consensus 111 iss~Grrf~ie~a~vW~v~d~ 131 (148)
T pfam08670 111 ISSMGRRFSIEQAVAWKLLDE 131 (148)
T ss_pred ECCCCCEEEECCEEEEEEECC
T ss_conf 827998899912799888858
No 123
>PTZ00130 heat shock protein 90; Provisional
Probab=96.10 E-value=0.014 Score=36.95 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=17.3
Q ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCC
Q ss_conf 99997999099966789966289978974996888204016
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~ 126 (820)
--..|.+-+...+.+. -|||+-.|+..-++
T Consensus 135 ~I~~Dke~ktLtI~Dt-----------GIGMTk~eLi~NLG 164 (824)
T PTZ00130 135 RISANKEKNILSITDT-----------GIGMTKEDLINNLG 164 (824)
T ss_pred EEEECCCCCEEEEEEC-----------CCCCCHHHHHHHCC
T ss_conf 9897588998999844-----------88888999998569
No 124
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=95.91 E-value=0.079 Score=31.35 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCCCCCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 35577898105999979990999667899662899789749968882040168823899999863796167168861479
Q gi|254780413|r 75 VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 (820)
Q Consensus 75 ~~~~~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~~~~~~~~~~~~~g 154 (820)
.+.....|+ +| +|.+|++.|+||+++.++|.++.-+.|.++.++...... .-.-+.+.++++-.+....+-...+|
T Consensus 12 ~Ln~~~~pV--l~-vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~gs~-ll~ll~q~~~~~~~~~~~~v~l~~~g 87 (363)
T COG3852 12 ILNNLINPV--LL-VDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFGSL-LLSLLDQVLERGQPVTEYEVTLVILG 87 (363)
T ss_pred HHHCCCCCE--EE-ECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCH-HHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 874557856--99-827782896088899999977888824877887177728-89999899983588510102442078
Q ss_pred CCCEEEEEEEEEEEECCCCCE
Q ss_conf 883799998630015688736
Q gi|254780413|r 155 TNLYVPIDLAALPIYSRNREF 175 (820)
Q Consensus 155 ~~~~~~v~ls~~Pv~d~~g~~ 175 (820)
....+.++ ..|+--..|.+
T Consensus 88 ~~~~v~~~--v~~v~~~~G~v 106 (363)
T COG3852 88 RSHIVDLT--VAPVPEEPGSV 106 (363)
T ss_pred CCCEEEEE--EEECCCCCCEE
T ss_conf 65237899--86226899748
No 125
>KOG0501 consensus
Probab=95.86 E-value=0.029 Score=34.55 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.8
Q ss_pred HHHHCCCHHHCCC
Q ss_conf 9884896032078
Q gi|254780413|r 482 SKLFGYPVEDILR 494 (820)
Q Consensus 482 ~~l~G~~~~el~g 494 (820)
+..+||.+.++..
T Consensus 527 eKVL~~CPKDMkA 539 (971)
T KOG0501 527 EKVLGYCPKDMKA 539 (971)
T ss_pred HHHHHHCCCCCCC
T ss_conf 8886208410233
No 126
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=95.77 E-value=0.05 Score=32.83 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCEEE-EECCEEEEECHHHHHHHCCCCH
Q ss_conf 89999634997899-7099588720688988379844
Q gi|254780413|r 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357 (820)
Q Consensus 322 ~~~ild~lp~gv~i-~~~gri~~~N~a~~~l~G~~~~ 357 (820)
...+++++-.||+. ...|.+..+|.++++++|+...
T Consensus 217 r~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~ 253 (537)
T COG3290 217 RQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQP 253 (537)
T ss_pred HHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCC
T ss_conf 9999987636289987898576112889998465676
No 127
>KOG3558 consensus
Probab=95.66 E-value=0.038 Score=33.65 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=46.2
Q ss_pred EEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCC
Q ss_conf 059999799909996678996628997897499688820401688238999998637
Q gi|254780413|r 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 (820)
Q Consensus 84 rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~ 140 (820)
.||..++.||.|.|+|......+|.+--|+.|.++.|+.|+-| ..++++.|.-+
T Consensus 130 GFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~D---heE~~eqL~l~ 183 (768)
T KOG3558 130 GFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCD---HEEIAEQLGLR 183 (768)
T ss_pred CEEEEECCCCCEEEEECHHHHHHCCCCEEEECCHHHHCCCCCC---HHHHHHHHCCC
T ss_conf 4389981678779982035766171102430541321257667---89999874335
No 128
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=95.35 E-value=0.22 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCC
Q ss_conf 1013456545556578999963499789970-99588720688988379
Q gi|254780413|r 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354 (820)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~ 354 (820)
.+...+..++........+++++|.++++.+ .|+++.+|.+|+..++.
T Consensus 563 ~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~ 611 (1197)
T PRK09959 563 RRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTA 611 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999889999999836998769982556122411888987523
No 129
>pfam08446 PAS_2 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=95.28 E-value=0.18 Score=28.66 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCEEEEEEEC-CCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCC
Q ss_conf 9810599997-999099966789966289978974996888204016882389999986379
Q gi|254780413|r 81 RTVRFTWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 (820)
Q Consensus 81 ~~~rfvw~~D-~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~ 141 (820)
+|..|.-.+| +++++..+|....+++|.++++++|+++.++... +....+...+....
T Consensus 13 QPhG~LLal~~~~~~I~qaS~N~~~~lG~~~~~llG~~l~~ll~~---~~~~~l~~~l~~~~ 71 (107)
T pfam08446 13 QPHGCLLAVEEPDFRVLQASENAAEMLGLVAQQLLGTDLRTLLTP---SSAAALRKALAAGD 71 (107)
T ss_pred CCCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCH---HHHHHHHHHHHCCC
T ss_conf 788799999779987999855888885859589859968998698---89999999861578
No 130
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=94.82 E-value=0.31 Score=27.07 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCC
Q ss_conf 3456545556578999963499789970-9958872068898837984477224
Q gi|254780413|r 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 (820)
Q Consensus 310 ~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~ 362 (820)
......++..+.++.+++.++.||+..+ .|.+.-+|++..+++|.+..+.++.
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~ 413 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQ 413 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCH
T ss_conf 878889999988999981585038997478707762601788846870676440
No 131
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.22 Score=28.13 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99999999974220430785998387215689988489603207864433456456277899999886069840223488
Q gi|254780413|r 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 (820)
Q Consensus 450 ~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (820)
+.+++.+++.+.|.-|-..|.++++.+.|+. .++|...+. .+|+++...-+|-+...+...+....++.... .++
T Consensus 288 ~~~e~naif~~lP~Ditfvdk~diV~ffs~~-~rif~rt~s-viGr~v~~chpPksv~iv~ki~~~fksG~kd~-~ef-- 362 (409)
T COG2461 288 SLEELNAIFKHLPVDITFVDKNDIVRFFSGG-ERIFPRTPS-VIGRRVQLCHPPKSVHIVEKILKDFKSGEKDF-AEF-- 362 (409)
T ss_pred EHHHHHHHHHHCCCCEEEECCCCEEEECCCC-CEECCCCHH-HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH-HHH--
T ss_conf 5999999995388732785456627844896-320133767-61871557899842789999999865377456-777--
Q ss_pred EEECCCCCEEEEEEEEEECCCCC--EEEEEEEEHHHHHHHHHH
Q ss_conf 87638972899999988717887--399998651444434576
Q gi|254780413|r 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570 (820)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~Dite~k~~e~e 570 (820)
.. ...+.++..+........+. |.+-+.+|||.-|..+-+
T Consensus 363 w~-~~~~~~i~i~Y~av~de~ge~~g~le~~qdi~~i~~l~ge 404 (409)
T COG2461 363 WI-NMGDKFIHIRYFAVKDEEGEYLGTLEVVQDITRIKELEGE 404 (409)
T ss_pred HC-CCCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHCCCH
T ss_conf 45-5787358999999875888366542232203777742340
No 132
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.32 E-value=0.39 Score=26.27 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHH
Q ss_conf 8999963499789970-99588720688988379844772
Q gi|254780413|r 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 (820)
Q Consensus 322 ~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l 360 (820)
...+++....|++..+ .|+++++|+...+++|......+
T Consensus 205 ~~~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~~~~~~~ 244 (639)
T PRK11388 205 LNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQ 244 (639)
T ss_pred HHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCHHHHC
T ss_conf 6888648876289988999174004899988598845644
No 133
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.068 Score=31.85 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCC-CCEEEEECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 657899996349-9789970995887206889883798447722467611220245545135678999875058665599
Q gi|254780413|r 319 ENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 (820)
Q Consensus 319 ~~~~~~ild~lp-~gv~i~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 397 (820)
...+..++..+| +.-++...+++.|.++. .+++... ...+++... +.+.|... .......-.-..|..-.+
T Consensus 289 ~~e~naif~~lP~Ditfvdk~diV~ffs~~-~rif~rt-~sviGr~v~---~chpPksv--~iv~ki~~~fksG~kd~~- 360 (409)
T COG2461 289 LEELNAIFKHLPVDITFVDKNDIVRFFSGG-ERIFPRT-PSVIGRRVQ---LCHPPKSV--HIVEKILKDFKSGEKDFA- 360 (409)
T ss_pred HHHHHHHHHHCCCCEEEECCCCEEEECCCC-CEECCCC-HHHHCCCCC---CCCCCCHH--HHHHHHHHHHHCCCCCHH-
T ss_conf 999999995388732785456627844896-3201337-676187155---78998427--899999998653774567-
Q ss_pred EEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999738944999999632433320023334456788889999
Q gi|254780413|r 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 (820)
Q Consensus 398 ~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~ 442 (820)
.++ +. .++..... +-....|..|...+......|+|.-+.
T Consensus 361 -efw-~~-~~~~~i~i--~Y~av~de~ge~~g~le~~qdi~~i~~ 400 (409)
T COG2461 361 -EFW-IN-MGDKFIHI--RYFAVKDEEGEYLGTLEVVQDITRIKE 400 (409)
T ss_pred -HHH-CC-CCCCEEEE--EEEEEECCCCCEEEEEHHHHHHHHHHH
T ss_conf -774-55-78735899--999987588836654223220377774
No 134
>TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130 Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage.
Probab=94.16 E-value=0.029 Score=34.51 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=34.4
Q ss_pred HHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHCCC
Q ss_conf 9742204307859983872156899884896032078644334564562-77899999886069
Q gi|254780413|r 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLD 520 (820)
Q Consensus 458 le~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 520 (820)
+|.+|-|-+.+|..|+|...|++=-.|.|.+|..++||++-.-+.|-.. +.....+..-..+|
T Consensus 24 ~d~LpfGAiqlD~~G~I~~YN~aEg~l~GR~P~~VIGrnFF~evAPCt~~~~F~G~F~~gv~~G 87 (126)
T TIGR02373 24 LDSLPFGAIQLDGSGRILKYNAAEGELTGRDPERVIGRNFFKEVAPCTDIPEFSGRFLEGVASG 87 (126)
T ss_pred CCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 2255410488669883021101100013879773227434233278888844323240110246
No 135
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=93.63 E-value=0.27 Score=27.42 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=30.9
Q ss_pred EEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCC
Q ss_conf 16886147988379999863001568873630556689852210
Q gi|254780413|r 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 (820)
Q Consensus 146 ~~~~~~~~g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~ 189 (820)
+...++++|+ ++|+..++.|++|.+|++.++- |+.+|+++
T Consensus 3 e~r~~~~dG~--~~w~~~~~~~~~~~~g~~~~~i--~~~~DIte 42 (43)
T smart00086 3 EYRLRRKDGS--YIWVLVSASPIRDEDGEVEGIL--GVVRDITE 42 (43)
T ss_pred EEEEECCCCC--EEEEEEEEEEEECCCCCEEEEE--EEEEECCC
T ss_conf 9999988999--9999999999999898999999--99971779
No 136
>KOG1979 consensus
Probab=93.55 E-value=0.13 Score=29.67 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780413|r 703 SVKQIALNILS 713 (820)
Q Consensus 703 ~l~Qvl~NLl~ 713 (820)
.|+-||.+.+.
T Consensus 653 ~iehvLfp~~k 663 (694)
T KOG1979 653 LIEHVLFPALK 663 (694)
T ss_pred HHHHHHHHHHH
T ss_conf 78888789988
No 137
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=93.31 E-value=0.11 Score=30.36 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHCCCC---C-CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 999999999888871889---7-879999998049949999997889789888664237718734787666788860689
Q gi|254780413|r 704 VKQIALNILSNAIHFTPS---G-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 (820)
Q Consensus 704 l~Qvl~NLl~NAik~t~~---g-g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLa 779 (820)
|+-.+--=|+||+||.-+ . |.|.|+=..-.+ .+.+.|+|+|--.+=+....=.-|+-.-++-..-+- =||||.
T Consensus 44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyED-klev~vsD~G~SFD~d~~k~~lGPyd~~~~i~~L~e--GGLGLF 120 (161)
T TIGR01924 44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYED-KLEVIVSDEGDSFDLDTKKQELGPYDKSEDIDQLRE--GGLGLF 120 (161)
T ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEE-EEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHC--CCCHHH
T ss_conf 67766555303311223089836789988878875-789998207864111002532589795787543201--771366
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780413|r 780 LAKAMVD 786 (820)
Q Consensus 780 i~k~iVe 786 (820)
|--.|..
T Consensus 121 LietLMD 127 (161)
T TIGR01924 121 LIETLMD 127 (161)
T ss_pred HHHCCCC
T ss_conf 4510376
No 138
>KOG1229 consensus
Probab=93.20 E-value=0.33 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHCCCCEEEEECCE-EEEECHHHHHHHCCCCHHHHCC
Q ss_conf 99963499789970995-8872068898837984477224
Q gi|254780413|r 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 (820)
Q Consensus 324 ~ild~lp~gv~i~~~gr-i~~~N~a~~~l~G~~~~e~l~~ 362 (820)
..+|..-.+|-+.+.++ +.|+||+|..++||-..+.++.
T Consensus 161 aaLD~c~eAiEI~~ddhViQYVNpAfE~mmG~hkgEliGk 200 (775)
T KOG1229 161 AALDECDEAIEICDDDHVIQYVNPAFENMMGCHKGELIGK 200 (775)
T ss_pred HHHHHHHHHHEECCCHHHHHHHCHHHHHHHCCHHHHHCCC
T ss_conf 9886230032004634689873578886331010212377
No 139
>KOG3561 consensus
Probab=92.20 E-value=0.11 Score=30.34 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.5
Q ss_pred EEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCC
Q ss_conf 059999799909996678996628997897499688820401688
Q gi|254780413|r 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 (820)
Q Consensus 84 rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~ 128 (820)
.|.|.+--+|+++|||...+.+|||..+|++|.++.++.|+.+.+
T Consensus 106 GF~fvV~cdG~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d~~ 150 (803)
T KOG3561 106 GFLFVVNCDGRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLDND 150 (803)
T ss_pred CEEEEEECCCEEEEEECCHHHHHCCCHHHHHCCHHHHHCCCCCCC
T ss_conf 748999657459999554477658687887334198760843247
No 140
>KOG0020 consensus
Probab=91.60 E-value=0.42 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.342 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999866431885200033179999999999999998737808999737988468988899999999999888871
Q gi|254780413|r 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 (820)
Q Consensus 639 ~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~ 718 (820)
-||.+||+ ||.+..-+ ..+.+-++-++++..-+.|..| -|+..+.--+-|.+.-.+.-
T Consensus 689 Plirell~--Ri~adeeD--------~t~~d~A~lmf~TAtlrSGf~L------------~d~~~fadrIe~~lr~sL~i 746 (785)
T KOG0020 689 PLIRELLR--RIAADEED--------ETVKDTAVLMFETATLRSGFIL------------QDTKDFADRIENMLRQSLNI 746 (785)
T ss_pred HHHHHHHH--HHHCCCCC--------CHHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHHHHCCC
T ss_conf 28999998--74158330--------0599999999988776337402------------56678899999999852599
Q ss_pred CCC
Q ss_conf 889
Q gi|254780413|r 719 TPS 721 (820)
Q Consensus 719 t~~ 721 (820)
.|.
T Consensus 747 s~D 749 (785)
T KOG0020 747 SPD 749 (785)
T ss_pred CCC
T ss_conf 942
No 141
>KOG3753 consensus
Probab=91.05 E-value=0.19 Score=28.52 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=95.6
Q ss_pred CCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-EEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 5998387215689988489603207864433456456277899999886069840-223488876389728999999887
Q gi|254780413|r 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKK 547 (820)
Q Consensus 469 D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 547 (820)
.+.+-|..+..++..++||-+.+++|+++...++++++..+.+....+...+... +.-..+++...+|.++.+.....-
T Consensus 338 TptClf~hVDeaAVp~LGyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~aqNG~yv~ldTeWSs 417 (1114)
T KOG3753 338 TPTCLFQHVDEAAVPLLGYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCAQNGSYVRLDTEWSS 417 (1114)
T ss_pred CCCCEEEECCHHHHHHHCCCCHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECHHHH
T ss_conf 78600341325442232047265526416553167742899999999998579876454650001038867997330443
Q ss_pred --CCCCCE-EEEE----------EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------HHHH
Q ss_conf --178873-9999----------86514444345765446688789999999999852345317------------4899
Q gi|254780413|r 548 --LPFSSC-YSLT----------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT------------PLTA 602 (820)
Q Consensus 548 --~~~~~~-~~~v----------~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrt------------PL~~ 602 (820)
.+..+- -++| -.|+-.-+---.+.. -....+.+.+-+...|-.|.|-.-. +|.+
T Consensus 418 FVNPWSRKieFVvGRHrVrt~PlneDVFaa~~pt~~~n-~~~iqel~eqI~edlLqpv~~svSsg~~svg~~~S~~~l~s 496 (1114)
T KOG3753 418 FVNPWSRKIEFVVGRHRVRTGPLNEDVFAAPPPTIQSN-DTDIQELAEQIFEDLLQPVHNSVSSGYGSVGSLGSGEGLSS 496 (1114)
T ss_pred CCCHHHHHEEEEEEECEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 05810210132532032211676645115899975557-75579999999998754401457877565533457754334
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999997312687788899999999999899999999999998664
Q gi|254780413|r 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 (820)
Q Consensus 603 I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~sri 650 (820)
+..+.+.+.. +..+-++..+-+...++...+.++...+++
T Consensus 497 ~~SSSe~lg~--------~~s~~~l~~~l~~~n~lk~~~r~s~~~ge~ 536 (1114)
T KOG3753 497 RASSSEVLGH--------ETSRFTLQQSLRRVNKLKNRGRQSRESGEQ 536 (1114)
T ss_pred CCCCHHHCCC--------CCHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 3430011168--------403668998723202666666677653122
No 142
>TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130 Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage.
Probab=90.84 E-value=0.087 Score=31.07 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=63.3
Q ss_pred CCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHHCCCCCCC-HHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 789810599997999099966789966289978974996-888204016882-389999986379616716886147988
Q gi|254780413|r 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTN 156 (820)
Q Consensus 79 ~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~-~~e~~~~~~~~p-~~~i~~~l~~~~~~~~~~~~~~~~g~~ 156 (820)
...|+- -=++|..|++..-|.+=.+|.|..|..||||. |.||++.-+... .++..+-..+|.--.......--.+..
T Consensus 25 d~LpfG-AiqlD~~G~I~~YN~aEg~l~GR~P~~VIGrnFF~evAPCt~~~~F~G~F~~gv~~G~ln~mfdy~Fdyqm~p 103 (126)
T TIGR02373 25 DSLPFG-AIQLDGSGRILKYNAAEGELTGRDPERVIGRNFFKEVAPCTDIPEFSGRFLEGVASGQLNAMFDYVFDYQMAP 103 (126)
T ss_pred CCCCCC-EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCE
T ss_conf 255410-4886698830211011000138797732274342332788888443232401102465213676665575860
Q ss_pred CEEEEEEEEEE
Q ss_conf 37999986300
Q gi|254780413|r 157 LYVPIDLAALP 167 (820)
Q Consensus 157 ~~~~v~ls~~P 167 (820)
.+|-|.|.-.+
T Consensus 104 v~Vkihmk~a~ 114 (126)
T TIGR02373 104 VKVKIHMKKAL 114 (126)
T ss_pred EEEEEEEECCC
T ss_conf 58999852288
No 143
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.83 E-value=0.79 Score=24.03 Aligned_cols=101 Identities=27% Similarity=0.402 Sum_probs=53.7
Q ss_pred EEECHHH----HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCE----------E
Q ss_conf 8988899----9999999998888718897879999998049949999997889789888664237718----------7
Q gi|254780413|r 697 ILADLRS----VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG----------Q 762 (820)
Q Consensus 697 v~~D~~~----l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~----------~ 762 (820)
-.+|... +.-+.-.||-||+||...| .|+|...... ....+.|+.--.+=......++..--. |
T Consensus 53 sr~dy~evrhsvgYl~NELiENAVKfra~g-eIvieasl~s-~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieR 130 (184)
T COG5381 53 SRADYDEVRHSVGYLANELIENAVKFRATG-EIVIEASLYS-HKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIER 130 (184)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEECC-CEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 744188873458898999998666015798-5899998314-06888730357885188899999998607929999999
Q ss_pred EC-CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 34-78766678886068999999996198699997889953
Q gi|254780413|r 763 IP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 763 ~~-~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
.. +.......|+||||-- ++.--|.++.--=.|+.|+
T Consensus 131 iEanA~~~d~~gSglGLLT---lmsDYgA~faWiF~~~~~s 168 (184)
T COG5381 131 IEANALESDCEGSGLGLLT---LMSDYGAQFAWIFVPVSGS 168 (184)
T ss_pred HHHHCCCCCCCCCCCCCEE---HHHHHCCEEEEEEECCCCC
T ss_conf 9860358887656641000---1234233268998356777
No 144
>pfam07310 PAS_5 PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.
Probab=90.59 E-value=1.1 Score=22.90 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=49.3
Q ss_pred CEEEEEEECCCC--CEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCE
Q ss_conf 810599997999--0999667899662899789749968882040168823-8999998637961671688614798837
Q gi|254780413|r 82 TVRFTWNIDAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLY 158 (820)
Q Consensus 82 ~~rfvw~~D~eG--r~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~ 158 (820)
|--||-+.+..| ||..+-..+++++|+ |+-|+++.++..+...+.- ..+..++....+..........+|..
T Consensus 38 p~~file~~~~~~~r~RlaGt~l~~~~G~---d~~G~~~~~l~~~~~r~~~~~~l~~v~~~~~p~~~~~~~~~~~g~~-- 112 (137)
T pfam07310 38 GDVFILERDAPGGAPFRLAGTRLCALFGR---ELRGIPFSALWTEASRREIARVLDVVFDRTLPVLAGVDAEARNGRS-- 112 (137)
T ss_pred CCCEEEEEECCCCEEEEEECHHHHHHHCC---CCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC--
T ss_conf 71389998479967999817889998299---8889788996196779999999999975894399997786389870--
Q ss_pred EEEEEEEEEEECCCCCEE
Q ss_conf 999986300156887363
Q gi|254780413|r 159 VPIDLAALPIYSRNREFS 176 (820)
Q Consensus 159 ~~v~ls~~Pv~d~~g~~~ 176 (820)
+.+++-.+|+.+++|+++
T Consensus 113 ~~~e~LlLPL~~d~g~vd 130 (137)
T pfam07310 113 LHFELLLLPLATRSGTPD 130 (137)
T ss_pred EEEEEEECCCCCCCCCHH
T ss_conf 154355525789999722
No 145
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=90.37 E-value=0.036 Score=33.86 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.1
Q ss_pred ECCCCCEEEECH
Q ss_conf 979990999667
Q gi|254780413|r 89 IDAHGYLKEISE 100 (820)
Q Consensus 89 ~D~eGr~~~vn~ 100 (820)
+|.||.++-.|.
T Consensus 65 i~~dgsIsV~dn 76 (633)
T PRK05559 65 LHADGSVSVRDN 76 (633)
T ss_pred ECCCCEEEEEEC
T ss_conf 978984999989
No 146
>KOG3559 consensus
Probab=90.30 E-value=0.39 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=40.8
Q ss_pred EEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCC
Q ss_conf 0599997999099966789966289978974996888204016882
Q gi|254780413|r 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 (820)
Q Consensus 84 rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p 129 (820)
.|++.+|++|.+.|+|....-.+|.+--|+.|..+.|..|+.|.|-
T Consensus 90 GF~fvva~dGkimYISETaSvhLGLSQVElTGNsi~eYIH~~D~de 135 (598)
T KOG3559 90 GFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPQDHDE 135 (598)
T ss_pred CEEEEEECCCCEEEEECCEEEEECCEEEEEECCHHHHHHCCCCHHH
T ss_conf 4599992799889985011345230004650623766406012578
No 147
>KOG1978 consensus
Probab=90.08 E-value=0.39 Score=26.26 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999986
Q gi|254780413|r 634 GNLVLDIVNDLLDIS 648 (820)
Q Consensus 634 ~~~l~~li~dlLd~s 648 (820)
..-|..||..|.++.
T Consensus 593 ~~dl~Eli~~l~~~~ 607 (672)
T KOG1978 593 VSDLKELISVLKNFP 607 (672)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 788999999986078
No 148
>PTZ00108 DNA topoisomerase II; Provisional
Probab=89.56 E-value=0.5 Score=25.48 Aligned_cols=23 Identities=4% Similarity=0.171 Sum_probs=8.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 43345645627789999988606
Q gi|254780413|r 497 FTVFLEQNTPSVMNHYLTEILSL 519 (820)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~ 519 (820)
|..-.++-........++.+..+
T Consensus 895 wSt~ip~ynp~dii~ni~r~l~g 917 (1506)
T PTZ00108 895 YSSFIPNYNYKDIIDNIKRYINK 917 (1506)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 34778999999999999998569
No 149
>KOG1977 consensus
Probab=89.41 E-value=0.74 Score=24.24 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHCC-CEEEEEEECCCCEE
Q ss_conf 88606899999999619-86999978899539
Q gi|254780413|r 773 GTGLGLPLAKAMVDANM-GKFYIFSTPAKGTL 803 (820)
Q Consensus 773 GtGLGLai~k~iVe~hg-G~i~v~S~pG~Gt~ 803 (820)
|-||-|.=|-.|+++.. -.+-..-+-|+-|+
T Consensus 1067 gD~L~~qEc~~lI~~Ls~c~lpFqCAHGRPsm 1098 (1142)
T KOG1977 1067 GDGLSLQECCRLIEALSSCQLPFQCAHGRPSM 1098 (1142)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 77657899999999887567752213699775
No 150
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=89.11 E-value=0.1 Score=30.58 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=10.1
Q ss_pred CCCCCCCCEEEEEEECCCCCE
Q ss_conf 355778981059999799909
Q gi|254780413|r 75 VFDPIPRTVRFTWNIDAHGYL 95 (820)
Q Consensus 75 ~~~~~~~~~rfvw~~D~eGr~ 95 (820)
+...++.+.++.-.+.++|..
T Consensus 242 vSVVNALS~~l~v~V~Rdgk~ 262 (941)
T PTZ00109 242 LSVANALSSFMKVKVFRNGKI 262 (941)
T ss_pred EEEEECCCCEEEEEEEECCEE
T ss_conf 686703657589999999999
No 151
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=88.90 E-value=0.057 Score=32.42 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=5.8
Q ss_pred HHHHHHHHHCCHH
Q ss_conf 9999997422043
Q gi|254780413|r 453 QLCSILEATSDGI 465 (820)
Q Consensus 453 ~L~~ile~~~~gI 465 (820)
++..++.+...++
T Consensus 472 EI~~li~alG~g~ 484 (725)
T PRK05644 472 EIGTLITALGTGI 484 (725)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999967788
No 152
>KOG0019 consensus
Probab=87.08 E-value=0.96 Score=23.41 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999998664318
Q gi|254780413|r 637 VLDIVNDLLDISKIESG 653 (820)
Q Consensus 637 l~~li~dlLd~srieaG 653 (820)
+.+|+..|-+-+=+.+|
T Consensus 608 ~k~lv~llfetALlssG 624 (656)
T KOG0019 608 AKDLVEQLYETALISAG 624 (656)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 89999999999999768
No 153
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit; InterPro: IPR005740 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=86.61 E-value=0.78 Score=24.07 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=11.1
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 8999998637961671688614798
Q gi|254780413|r 131 NHIGDLLKRQNTWYGKTTLWPIEGT 155 (820)
Q Consensus 131 ~~i~~~l~~~~~~~~~~~~~~~~g~ 155 (820)
..|.++|..-. ....+.+..|++
T Consensus 51 NsvDEvl~g~a--~~I~V~l~~dns 73 (655)
T TIGR01058 51 NSVDEVLAGYA--DNITVTLHKDNS 73 (655)
T ss_pred HHHHHHHHCCC--CEEEEEEECCCE
T ss_conf 46888982269--747999827870
No 154
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=86.01 E-value=0.1 Score=30.60 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=4.8
Q ss_pred ECCCCCEEEECH
Q ss_conf 979990999667
Q gi|254780413|r 89 IDAHGYLKEISE 100 (820)
Q Consensus 89 ~D~eGr~~~vn~ 100 (820)
+|.||.++-.|.
T Consensus 29 i~~dgsisV~Dn 40 (594)
T smart00433 29 IDKDNSISVEDN 40 (594)
T ss_pred ECCCCEEEEEEC
T ss_conf 927984999989
No 155
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=84.09 E-value=1.4 Score=22.34 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=3.6
Q ss_pred HHHHHHHCCCC
Q ss_conf 89999634997
Q gi|254780413|r 322 TPETVDKCPIP 332 (820)
Q Consensus 322 ~~~ild~lp~g 332 (820)
+.+....+|-|
T Consensus 305 f~E~~~~~P~~ 315 (647)
T TIGR01055 305 FCEMRNLLPRG 315 (647)
T ss_pred HHHHHCCCCCE
T ss_conf 88875188640
No 156
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=81.85 E-value=0.14 Score=29.60 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=13.4
Q ss_pred EEECCC-EEEEEEE-EECCCCCCCHHHHHHHHH
Q ss_conf 973894-4999999-632433320023334456
Q gi|254780413|r 403 IQWNRE-NSLAMTF-IPFEKANQFPENMPQNGI 433 (820)
Q Consensus 403 i~~~g~-~~~~l~~-~~~~~~d~~~~~~~~~~~ 433 (820)
..|.++ ....+.+ ..++..++.-+..++-..
T Consensus 259 ~q~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~a 291 (635)
T COG0187 259 LQWNDGYSENILSFVNNIPTREGGTHEAGFRSA 291 (635)
T ss_pred EEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 998068844799864585589986089999999
No 157
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=80.46 E-value=1.3 Score=22.58 Aligned_cols=40 Identities=5% Similarity=-0.046 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCCEEEE-ECCEEEEECHHHHHHHCCCC
Q ss_conf 55657899996349978997-09958872068898837984
Q gi|254780413|r 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKS 356 (820)
Q Consensus 317 ~~~~~~~~ild~lp~gv~i~-~~gri~~~N~a~~~l~G~~~ 356 (820)
+...++..++..+-.||... ..|++.-.|.....-+|...
T Consensus 194 qrrqrldnllqhlrdGvvaldaqGrveainqrlatalGid~ 234 (658)
T TIGR02329 194 QRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIDL 234 (658)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 56788999999863121432144327899888888852154
No 158
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=78.80 E-value=1.8 Score=21.38 Aligned_cols=145 Identities=10% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCC-CCC--------HHHHHHHHHHHHCCC
Q ss_conf 99999999974220430785998387215689988489603207864433456-456--------277899999886069
Q gi|254780413|r 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNT--------PSVMNHYLTEILSLD 520 (820)
Q Consensus 450 ~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~-~~~--------~~~~~~~~~~~~~~~ 520 (820)
+.+++.+|+-+..+||--=+ |+.+-+.+|.+.-... .-| .--...++..+...|
T Consensus 478 ~N~Ei~~~ItALG~GI~~d~-----------------Fdl~KLRYHKIIIMTDADVDGSHIRTLLLTFFYR~M~~LIE~G 540 (818)
T TIGR01059 478 SNDEIQAIITALGCGIGKDE-----------------FDLEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIENG 540 (818)
T ss_pred HHHHHHHHHHHHCCCCCCCC-----------------CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 12533888997368867667-----------------8723246443688406787836899999998874015887458
Q ss_pred CCCEEEEEEEEECCCCCEE-EEEEE----EEEC--CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8402234888763897289-99999----8871--788739999865144443457654466887899999999998523
Q gi|254780413|r 521 LRQTLEKITLGSTKEEKLL-SLRII----IKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 (820)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~--~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vs 593 (820)
-.. +....+++.+.+.-. .+... -..+ .-+...+ . .+...-....|+.........+..|. |+..|+
T Consensus 541 yvY-IAqPPLYKvk~gk~~~Yikdd~e~d~yll~~~~~~~~l---~-~~~~~L~~~~Le~~~~~~~~~~k~~~-l~~~~~ 614 (818)
T TIGR01059 541 YVY-IAQPPLYKVKKGKKERYIKDDKELDHYLLNLGINEAEL---V-ITKRELVGELLEDLVNAYLELEKRKN-LINRLE 614 (818)
T ss_pred CEE-EECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEE---E-ECHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 726-50786021204655112227789988988753242026---5-34789999999999999998863144-799998
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 453174899999999997312687
Q gi|254780413|r 594 HEIRTPLTAIIGFSEVIKNQRFGP 617 (820)
Q Consensus 594 HElrtPL~~I~g~~~~l~~~~~~~ 617 (820)
-....+...+.-|.++|....+..
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~ 638 (818)
T TIGR01059 615 RKAIRFSEELLIYQDLLEKELLEY 638 (818)
T ss_pred HHHCCCHHHHHHHHHHHCHHHHCH
T ss_conf 740435578887555302222001
No 159
>KOG3560 consensus
Probab=77.55 E-value=4.3 Score=18.63 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=46.7
Q ss_pred CCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 983872156899884896032078644334564562778999998860698402234888763897289999998871
Q gi|254780413|r 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 (820)
Q Consensus 471 ~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (820)
|+..+.+......++||...|+.+.+...+++.++.--+.+...+....|....+-.. ...++|+|.||..+...+
T Consensus 292 Dfa~vs~Dak~k~~lgy~eaEL~~m~gY~lvH~~D~~y~Aeah~e~iktgeSGmlvyR--~qtk~grw~wvqssarll 367 (712)
T KOG3560 292 DFALVSMDAKVKATLGYCEAELHGMPGYNLVHVEDKVYMAEAHSEGIKTGESGMLVYR--EQTKAGRWAWVQSSARLL 367 (712)
T ss_pred CCCEECCCHHHHHHHCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEE--EEECCCCEEEEECCCEEE
T ss_conf 6540032133555432015440578763312322345535889998635876448999--860478379853466243
No 160
>KOG0355 consensus
Probab=75.86 E-value=3.3 Score=19.53 Aligned_cols=23 Identities=4% Similarity=-0.094 Sum_probs=16.1
Q ss_pred EEEEEEEECCCCCCHHHHHHHCC
Q ss_conf 49999997889789888664237
Q gi|254780413|r 736 EVILRVRDTGVGMTNYELEKAMK 758 (820)
Q Consensus 736 ~v~i~V~DtG~GI~~~~~~~iFe 758 (820)
.+....-|.|.-|+|++++-|-.
T Consensus 754 ~ll~~~~~~~~~vep~y~pi~p~ 776 (842)
T KOG0355 754 LLLKYLNEDGQRVEPEYCPIIPM 776 (842)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 67665225786717522441468
No 161
>TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509 These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=75.41 E-value=4.1 Score=18.78 Aligned_cols=49 Identities=22% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHHCCHH---EEECCC-CE------EEE--EHHHHHHHHCCCH-HHCCCCCCCCCC
Q ss_conf 9999997422043---078599-83------872--1568998848960-320786443345
Q gi|254780413|r 453 QLCSILEATSDGI---AIINRE-GI------ILS--TNRAVSKLFGYPV-EDILRKPFTVFL 501 (820)
Q Consensus 453 ~L~~ile~~~~gI---~~~D~~-G~------i~~--~N~a~~~l~G~~~-~el~g~~~~~~~ 501 (820)
.|+.|||.-...- +..|++ |+ |.| ...+-.+|.-.-. =|+.|+++.--+
T Consensus 251 ~L~~iFepFG~ie~vqL~~D~~tG~SkGyGFiqF~~~~~A~~Al~~lNGk~e~AGR~ikVG~ 312 (531)
T TIGR01622 251 ELRQIFEPFGEIELVQLQKDPETGRSKGYGFIQFRDAEEAKEALEKLNGKFELAGRPIKVGL 312 (531)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEECCCEEEEEE
T ss_conf 87424210486124555327898813254005511167789999984880552574147742
No 162
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=70.34 E-value=6.4 Score=17.41 Aligned_cols=109 Identities=16% Similarity=0.215 Sum_probs=47.4
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC---CEEEEEEEECCCC
Q ss_conf 0331799999999999999987378089997379884689888999999999998888718897---8799999980499
Q gi|254780413|r 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNE 735 (820)
Q Consensus 659 ~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g---g~v~v~~~~~~~~ 735 (820)
-++++.+++|.++- ..++.|...-=-.-|.+.=|+.+.+ +....|-.=| ..|.|.+ -.+.
T Consensus 575 ~~~~~F~~lv~~AY--------~arvqLsaaGFY~TPkihwdra~~~-------G~PFyYFaYGAacSEV~vDt--lTGe 637 (781)
T COG4631 575 GQELAFADLVKQAY--------FARVQLSAAGFYKTPKIHWDRAAGR-------GRPFYYFAYGAACSEVSVDT--LTGE 637 (781)
T ss_pred CEECCHHHHHHHHH--------HEEEEEECCCCCCCCCCCCCHHHCC-------CCCEEEEEECCEEEEEEEEC--CCCE
T ss_conf 64237999999986--------6333310033445886542053167-------87417885064113688812--4523
Q ss_pred EEEEE---EEECCCCCCHHH-HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 49999---997889789888-66423771873478766678886068999999996198699997
Q gi|254780413|r 736 EVILR---VRDTGVGMTNYE-LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 (820)
Q Consensus 736 ~v~i~---V~DtG~GI~~~~-~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S 796 (820)
+...+ ..|.|--++|.. +.+|=--|- -|+|--.+..|+=--.|++.-.+
T Consensus 638 y~~~R~DiLHDvG~SLNpaiDlGQiEGgFv------------QGmGWLTtEeL~wd~kGRlrTha 690 (781)
T COG4631 638 YKVERTDILHDVGRSLNPAIDLGQIEGGFV------------QGMGWLTTEELWWDEKGRLRTHA 690 (781)
T ss_pred EEEEEEHHHHHHHHHCCCCCCCCCCCCHHC------------CCCCCCCHHHHEECCCCCEEECC
T ss_conf 788731255540011162123243033000------------15453255551466678765158
No 163
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit; InterPro: IPR014309 Members of this entry are the molybdopterin-containing large subunit of xanthine dehydrogenase (or, in, eukaryotes, the molybdopterin-binding domain) and those enzymes that reduces the purine pool by catabolizing xanthine to urate. This entry contains primarily bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0030151 molybdenum ion binding, 0050660 FAD binding.
Probab=69.47 E-value=2.8 Score=20.01 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=14.9
Q ss_pred HCCCHHHCCCCCCCCCCCCCCH
Q ss_conf 4896032078644334564562
Q gi|254780413|r 485 FGYPVEDILRKPFTVFLEQNTP 506 (820)
Q Consensus 485 ~G~~~~el~g~~~~~~~~~~~~ 506 (820)
+-|++....|+||......-..
T Consensus 591 i~wd~~~~~GrPFYYFAYGAac 612 (761)
T TIGR02965 591 IHWDRAKGRGRPFYYFAYGAAC 612 (761)
T ss_pred CCCCCCCCCCCCCEEECCCCEE
T ss_conf 2213311768721463024257
No 164
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=61.22 E-value=9.3 Score=16.20 Aligned_cols=51 Identities=18% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCC
Q ss_conf 88899999999999999999999742204307859983872156899884896
Q gi|254780413|r 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 (820)
Q Consensus 436 dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~ 488 (820)
|..++...+|- --.+.|.++++..+.++++-+.+|.+.++|.++..+|.-.
T Consensus 5 DRrE~~~~rQi--~l~~sl~~~i~~~~~PvCIRn~sG~Fi~~N~~F~~~F~~~ 55 (220)
T PRK13719 5 DRRELNTCRQI--DLLESLTAFIDDYSIPACIRNEDGSFIFFNTLFSKEFLGS 55 (220)
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHC
T ss_conf 26777457666--2799999999718996489778998301527899998741
No 165
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=60.52 E-value=4.9 Score=18.25 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=29.5
Q ss_pred HHHHHCC-HHEEECC----CCEEEEEHHHHHHHHCCCHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9974220-4307859----983872156899884896032078----644334564562778999998860698402234
Q gi|254780413|r 457 ILEATSD-GIAIINR----EGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 (820)
Q Consensus 457 ile~~~~-gI~~~D~----~G~i~~~N~a~~~l~G~~~~el~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (820)
.|.+.++ +|.-+|+ ++++.++-.-+.+- |=..-|+.. |-..--|.|.-.+...+++-. .+-...+++.
T Consensus 240 AF~SiN~~PiA~~~~~~~~~~~~~~L~~dYr~r-~~~~le~~~~~EekVaLvKfyPG~~p~il~~~~d--~GykGiViEG 316 (413)
T TIGR02153 240 AFQSINSIPIAKVDPKSLKEKEIEKLREDYRRR-GEKELELDDKFEEKVALVKFYPGLDPEILEFLVD--KGYKGIVIEG 316 (413)
T ss_pred HHHCCCCCCCEEECCCCCCCCEEEEEEEEEEEC-CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHC--CCCEEEEEEC
T ss_conf 553158865358817778744077754211313-7765320688771379998438988889999851--8715999833
Q ss_pred EEEEEC
Q ss_conf 888763
Q gi|254780413|r 528 ITLGST 533 (820)
Q Consensus 528 ~~~~~~ 533 (820)
--++..
T Consensus 317 TGLGHv 322 (413)
T TIGR02153 317 TGLGHV 322 (413)
T ss_pred CCCCCC
T ss_conf 787555
No 166
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=59.50 E-value=9.2 Score=16.24 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=42.9
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEE-EECCCCCEEEECHHHHHHHHH--------HHHHHHHHCCCCCCEEE
Q ss_conf 200033179999999999999998737808999-737988468988899999999--------99988887188978799
Q gi|254780413|r 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIAL--------NILSNAIHFTPSGGQII 726 (820)
Q Consensus 656 ~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~-~~~~~lp~v~~D~~~l~Qvl~--------NLl~NAik~t~~gg~v~ 726 (820)
.++...+|+..++..+.. ..+|.+.- ++=..+|. ||.--|++||- .||.|..+++++||+|.
T Consensus 125 ~l~~~v~Dlp~v~~~a~~-------~~rv~~~~gdff~~~P~--aD~y~l~~vLH~w~d~~~~~iL~~~~~al~~~grll 195 (239)
T pfam00891 125 HIKGIVFDLPHVIADAPS-------ADRVEFVGGDFFESVPE--ADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVI 195 (239)
T ss_pred CCEEEEEECHHHHHHCCC-------CCCEEEECCCCCCCCCC--CCEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 983898646877862764-------68548844877778888--517764014315999999999999999779998899
Q ss_pred EE
Q ss_conf 99
Q gi|254780413|r 727 IS 728 (820)
Q Consensus 727 v~ 728 (820)
|.
T Consensus 196 I~ 197 (239)
T pfam00891 196 VV 197 (239)
T ss_pred EE
T ss_conf 99
No 167
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=58.20 E-value=10 Score=15.84 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=28.8
Q ss_pred CCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHH
Q ss_conf 8981059999799909996678996628997897499688820
Q gi|254780413|r 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122 (820)
Q Consensus 80 ~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~ 122 (820)
.-|+. |-..|..+++.|+||-...+++ .+.+|+...++.
T Consensus 83 nmPiG-ii~~~e~~~veW~Npf~~~if~---~~~~~~~~~~~~ 121 (655)
T COG3887 83 NMPIG-IILFNETNKVEWVNPFASKIFN---KNEIGESLSELI 121 (655)
T ss_pred HCCCE-EEEECCCCCEEEECHHHHHHCC---HHHHHHHHHHHH
T ss_conf 48823-9998688956886688997467---535556677775
No 168
>PRK07576 short chain dehydrogenase; Provisional
Probab=57.53 E-value=11 Score=15.77 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=19.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89888999999999998888718897879999
Q gi|254780413|r 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 (820)
Q Consensus 697 v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~ 728 (820)
=.+.|.-+-.++.=|+|.+.+|. .|..|.|.
T Consensus 216 R~g~pedia~~v~FL~Sd~s~~i-TG~~i~VD 246 (260)
T PRK07576 216 RNGTGQDIANAALFLASDMASYI-TGVVLPVD 246 (260)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEEC
T ss_conf 98699999999999958742482-58618879
No 169
>pfam11212 DUF2999 Protein of unknown function (DUF2999). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=56.63 E-value=11 Score=15.66 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCC
Q ss_conf 174899999999997312687788899999999999899999999999-9986643188520
Q gi|254780413|r 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL-LDISKIESGKMNL 657 (820)
Q Consensus 597 rtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dl-Ld~srieaG~~~l 657 (820)
.|||.+.-...+ | | +..++.+..+.....+-.-...-|+.| |||||+|+.|-.+
T Consensus 27 eNP~~AM~~i~q-L-----G-ip~eKLQ~lm~~VM~nP~LIkeAv~elgLdfskve~Akakl 81 (82)
T pfam11212 27 ENPLMAMATIQQ-L-----G-IPPEKLQQLMMLVMQNPALIKEAVEELGLDFSKVEAAKAKL 81 (82)
T ss_pred HCHHHHHHHHHH-C-----C-CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 297999999998-0-----8-99999999999997192889999999678789999998753
No 170
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=55.27 E-value=8.2 Score=16.60 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=37.5
Q ss_pred EEECCCCCCHHHHHHHCCCCEEECCCCCCCCC--CCCCHHHHHHHHHHHCCCEEEEEEEC--CCCEEEEEEEC
Q ss_conf 99788978988866423771873478766678--88606899999999619869999788--99539999963
Q gi|254780413|r 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTP--AKGTLIEIIFP 809 (820)
Q Consensus 741 V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~--GtGLGLai~k~iVe~hgG~i~v~S~p--G~Gt~f~v~lP 809 (820)
|===|||=|.|.- -=.|.+....+.-. |-=||| ++|||+-||.+.+=..| |+-|.+.|.=|
T Consensus 572 VLSPGPGrP~dFd-----v~~Ti~aa~ar~lP~FGVCLGL---Qg~vEafGG~L~vL~~P~HGK~srirVl~p 636 (726)
T TIGR01815 572 VLSPGPGRPKDFD-----VKETIKAALARDLPVFGVCLGL---QGLVEAFGGELDVLAIPVHGKASRIRVLEP 636 (726)
T ss_pred EECCCCCCCCCCC-----HHHHHHHHHHCCCCEEEEHHHH---HHHHHHHCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 8687312387544-----7889999997289857741346---899987467213578887886336888368
No 171
>pfam03281 Mab-21 Mab-21 protein.
Probab=54.17 E-value=12 Score=15.39 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=3.3
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780413|r 636 LVLDIVNDLL 645 (820)
Q Consensus 636 ~l~~li~dlL 645 (820)
+...++-.|+
T Consensus 300 ~f~~~v~~l~ 309 (360)
T pfam03281 300 RLNGILLQLI 309 (360)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 172
>pfam05127 DUF699 Putative ATPase (DUF699). This putative domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often associated with pfam00583. This domain is found in isolation in the uncharacterized protein HI1254 from Haemophilus influenzae.
Probab=49.55 E-value=14 Score=14.89 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=31.8
Q ss_pred EEEEEECCCCCCHHHHHHHCCCCEEE-CCCCCCCCCCCCCHHHH
Q ss_conf 99999788978988866423771873-47876667888606899
Q gi|254780413|r 738 ILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPL 780 (820)
Q Consensus 738 ~i~V~DtG~GI~~~~~~~iFepF~~~-~~~~~~~~~GtGLGLai 780 (820)
-+-|-|.-.+||-..+.++.+-|.++ =+++-..|+|||=|+++
T Consensus 77 DllvVDEAAaIP~p~L~~ll~~~~rvvfaTTihGYEGtGRgF~l 120 (160)
T pfam05127 77 DLLVVDEAAAIPLPLLKQLLEGFPRVVFATTVHGYEGTGRGFSL 120 (160)
T ss_pred CEEEEEHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHH
T ss_conf 68997324218889999998508869999633651145812456
No 173
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.28 E-value=14 Score=14.86 Aligned_cols=19 Identities=5% Similarity=0.265 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999999998888718
Q gi|254780413|r 701 LRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 701 ~~~l~Qvl~NLl~NAik~t 719 (820)
|.-+-+++.=|+|+.-.|+
T Consensus 206 peeiA~~v~fL~S~~a~~i 224 (238)
T PRK05786 206 PEDFAKVIIWLLTDEAEWV 224 (238)
T ss_pred HHHHHHHHHHHHCCHHCCC
T ss_conf 9999999999969721396
No 174
>pfam07793 DUF1631 Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=48.37 E-value=15 Score=14.76 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 2687788899999999999------------899999999999998664318852000331799999999999999
Q gi|254780413|r 614 RFGPLGNPRYIEYANYIDR------------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 (820)
Q Consensus 614 ~~~~~~~~~~~~~l~~i~~------------~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~ 677 (820)
+.|+ ..+..++|+..+.+ .-.++...+-.||. +++.|--.+.+.+....+++.+.......
T Consensus 524 r~G~-~s~~w~~~l~~~d~Liw~~~~~~~~~~r~~l~~~~p~Ll~--~l~~gL~~i~~~~~~~~~~~~~L~~~~~~ 596 (729)
T pfam07793 524 REGE-ESPAWQEALALLDDLIWSVQPHDDDEGRDRLLALVPGLLK--ALRAGLEQVGYDPFETEAFFRELEAVHLE 596 (729)
T ss_pred HCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2388-8676999999999999863756564307889987399999--99999986589868999999999999998
No 175
>PRK06841 short chain dehydrogenase; Provisional
Probab=47.07 E-value=15 Score=14.62 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=8.1
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+-.|+
T Consensus 221 g~pediA~~v~fLaSd~ss~i 241 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAAMI 241 (255)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999968732385
No 176
>PRK07062 short chain dehydrogenase; Provisional
Probab=44.16 E-value=17 Score=14.31 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=10.1
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-..+.=|+|..-.|+
T Consensus 229 ~g~peevA~~v~fLaS~~s~~i 250 (265)
T PRK07062 229 FGRPDEAARALFFLASPLSSYT 250 (265)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 7689999999999968732573
No 177
>KOG0859 consensus
Probab=43.69 E-value=10 Score=15.98 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=11.7
Q ss_pred CEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 7399998651444434576544
Q gi|254780413|r 552 SCYSLTMHDISEWKQEKNKLSH 573 (820)
Q Consensus 552 ~~~~~v~~Dite~k~~e~el~~ 573 (820)
--++++.-|-..|...-.-|.+
T Consensus 61 ~tylcvadds~gR~ipfaFLe~ 82 (217)
T KOG0859 61 LTYLCVADDSAGRQIPFAFLER 82 (217)
T ss_pred EEEEEEEECCCCCCCCHHHHHH
T ss_conf 5999997062034153799999
No 178
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.52 E-value=17 Score=14.25 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 889999999999988
Q gi|254780413|r 700 DLRSVKQIALNILSN 714 (820)
Q Consensus 700 D~~~l~Qvl~NLl~N 714 (820)
.+.-+-+++.=|++|
T Consensus 223 ~p~dva~~v~fL~s~ 237 (253)
T PRK08217 223 EPEEIAHTVRFIIEN 237 (253)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999958
No 179
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=42.96 E-value=18 Score=14.19 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCHHHH
Q ss_conf 998523453174899
Q gi|254780413|r 588 FLARVSHEIRTPLTA 602 (820)
Q Consensus 588 fla~vsHElrtPL~~ 602 (820)
||+..+.++-=+...
T Consensus 322 FL~~a~~~l~~~~k~ 336 (471)
T TIGR01818 322 FLALAAKELDVEPKL 336 (471)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999988742865113
No 180
>PRK07041 short chain dehydrogenase; Provisional
Probab=42.95 E-value=18 Score=14.19 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=5.3
Q ss_pred ECHHHHHHHHHHHHH
Q ss_conf 888999999999998
Q gi|254780413|r 699 ADLRSVKQIALNILS 713 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~ 713 (820)
+.|.-+-+++.=|++
T Consensus 208 g~pedia~~v~fL~s 222 (240)
T PRK07041 208 GQPEDVANAIVFLAA 222 (240)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 499999999999984
No 181
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=42.69 E-value=18 Score=14.16 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=8.8
Q ss_pred ECHHHHHHHHHHHHH-HHHHCC
Q ss_conf 888999999999998-888718
Q gi|254780413|r 699 ADLRSVKQIALNILS-NAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~-NAik~t 719 (820)
++|.-+-.++.=|+| .|-.|+
T Consensus 240 g~pedia~~v~fLaS~~as~yi 261 (278)
T PRK08277 240 GKPEELLGTLLWLADEDASSFV 261 (278)
T ss_pred CCHHHHHHHHHHHHCCCHHCCC
T ss_conf 4999999999999098052773
No 182
>TIGR02502 type_III_YscX type III secretion protein, YscX family; InterPro: IPR012672 Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believed to be part of the secretion machinery ..
Probab=42.15 E-value=14 Score=14.99 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=5.7
Q ss_pred EHHHHHHHHCCCHHHC
Q ss_conf 1568998848960320
Q gi|254780413|r 477 TNRAVSKLFGYPVEDI 492 (820)
Q Consensus 477 ~N~a~~~l~G~~~~el 492 (820)
+|-.-+++.-.+.+|+
T Consensus 8 ~hiGIE~L~~~s~eE~ 23 (126)
T TIGR02502 8 LHIGIEKLTAISAEEV 23 (126)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 1123666403304778
No 183
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=41.57 E-value=18 Score=14.04 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=11.7
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+--+.+-|+|.+-.|+
T Consensus 219 g~pedia~~~~fLaS~~ss~i 239 (254)
T PRK08085 219 GDPQELIGAAVFLSSKASDFV 239 (254)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 899999999999957522486
No 184
>PRK05717 oxidoreductase; Validated
Probab=41.24 E-value=16 Score=14.46 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=14.8
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+++.-+-.++.=|+|++-.|+
T Consensus 215 ~g~~edia~~v~fL~S~~ss~i 236 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRNAGFV 236 (255)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8199999999999967721481
No 185
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.14 E-value=19 Score=13.99 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=13.3
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.|.|.-+-.++.=|+|++-.|+
T Consensus 223 ~g~pedia~~v~fL~Sd~ssyi 244 (259)
T PRK06124 223 WGRPEEIAGAAVFLASPAASYV 244 (259)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8599999999999958443586
No 186
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=41.05 E-value=19 Score=13.98 Aligned_cols=20 Identities=5% Similarity=-0.047 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999999999999998737
Q gi|254780413|r 663 SLDEAVSEAISLVQLYANEK 682 (820)
Q Consensus 663 dl~~lv~~~~~~~~~~a~~~ 682 (820)
|=.++++....-++|...+-
T Consensus 255 ~d~~L~~~L~~HL~PAl~Rl 274 (426)
T PRK11564 255 DEQGLCDQLYAHLAQALNRS 274 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 86999999999999999999
No 187
>PRK07774 short chain dehydrogenase; Provisional
Probab=40.99 E-value=19 Score=13.98 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=14.0
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-..+.=|+|..-.|+
T Consensus 214 ~g~pedia~~v~fL~S~~s~~i 235 (250)
T PRK07774 214 MGTPEDLVGMCLFLLSDAASWI 235 (250)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8599999999999948242686
No 188
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.57 E-value=19 Score=13.93 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=9.2
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-.++.=|+|.+-.|+
T Consensus 224 g~peeiA~~v~FLaSd~s~~i 244 (258)
T PRK06935 224 GEPDDLMGAAVFLASRASDYV 244 (258)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999838432691
No 189
>PRK07814 short chain dehydrogenase; Provisional
Probab=39.61 E-value=20 Score=13.83 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=17.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8988899999999999888871889787999
Q gi|254780413|r 697 ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 697 v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
=.+++.-+-+++.=|+|.+..|+- |..|.|
T Consensus 218 R~g~pedia~~v~FL~Sd~s~~iT-G~~i~V 247 (263)
T PRK07814 218 RLGDPEDIAAAAVYLASPAGSYLT-GKTLEV 247 (263)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCCC-CCEEEE
T ss_conf 980999999999999484325944-882886
No 190
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=39.46 E-value=20 Score=13.82 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=9.1
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-.++.-|+|-+..|+
T Consensus 226 g~p~dia~~v~FL~Sd~s~~i 246 (265)
T PRK07097 226 GTPEDLAGPAVFLASDASNFV 246 (265)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 889999999999948442483
No 191
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=39.12 E-value=20 Score=13.78 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=9.4
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
|+|.-+-.++.-|+|++..|+
T Consensus 219 g~p~dIa~~v~FL~S~~asyi 239 (261)
T PRK08936 219 GKPEEIAAVAAWLASSEASYV 239 (261)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 399999999999827432683
No 192
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=38.84 E-value=20 Score=13.75 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=11.5
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+++.-+-.++.-|+|+.-.|+
T Consensus 210 ~g~p~dia~~v~fL~S~~a~~i 231 (245)
T PRK12936 210 MGTGAEVASAVAYLASDEAAYV 231 (245)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8299999999999968343484
No 193
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=38.74 E-value=20 Score=13.74 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=9.2
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+-.|+
T Consensus 216 g~peeia~~v~fLaSd~s~~i 236 (251)
T PRK07523 216 GKVEELVGACIFLASDASSFV 236 (251)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 899999999999948742482
No 194
>KOG4013 consensus
Probab=38.45 E-value=20 Score=13.71 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=11.0
Q ss_pred HCCCCEEEE---ECCEEEEECHHHHHHH
Q ss_conf 349978997---0995887206889883
Q gi|254780413|r 328 KCPIPFFVY---SHGNLFYANPSFLLLT 352 (820)
Q Consensus 328 ~lp~gv~i~---~~gri~~~N~a~~~l~ 352 (820)
..|.+++.. +.|.++|-....+.+.
T Consensus 57 ~~~iP~ycMiRpR~GDFvYsd~Em~a~~ 84 (255)
T KOG4013 57 KYPIPLYCMIRPRAGDFVYSDDEMAANM 84 (255)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 1455169997137787412618998788
No 195
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=38.10 E-value=21 Score=13.67 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=10.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.=|+|.+-.|+
T Consensus 224 ~g~peeia~~v~fLaSd~as~i 245 (259)
T PRK08213 224 LGDDEDLKGAALLLASDASKHI 245 (259)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 9199999999999968253585
No 196
>PRK06114 short chain dehydrogenase; Provisional
Probab=37.21 E-value=21 Score=13.57 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=10.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-..+.=|+|.+..|+
T Consensus 227 ~g~peeiA~~v~FLaSd~as~i 248 (262)
T PRK06114 227 MADVDEMVGPAVFLLSDAASFV 248 (262)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8689999999999957632475
No 197
>pfam11171 DUF2958 Protein of unknown function (DUF2958). Some members are annotated as lipoproteins however this cannot be confirmed. This family of proteins has no known function.
Probab=37.08 E-value=21 Score=13.56 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=14.6
Q ss_pred CCCCCCEEEEEEEEC-CCCEEEEEEEECCCCCCH
Q ss_conf 188978799999980-499499999978897898
Q gi|254780413|r 718 FTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTN 750 (820)
Q Consensus 718 ~t~~gg~v~v~~~~~-~~~~v~i~V~DtG~GI~~ 750 (820)
|+|.|+-...-+... .++...+-..|-|.|+|+
T Consensus 32 F~P~~~atWllteldp~dgd~~fGL~DlG~G~pE 65 (112)
T pfam11171 32 FTPDGAATWLLTELDPADGDTLFGLCDLGLGCPE 65 (112)
T ss_pred ECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 6788671457774067888749988617999841
No 198
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.25 E-value=21 Score=13.57 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=10.5
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-.+..-|+|.+-.|+
T Consensus 217 g~pedia~~v~fL~S~~a~~i 237 (251)
T PRK12481 217 GTPDDLAGPAIFLSSSASDYV 237 (251)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 689999999999938253590
No 199
>PRK07831 short chain dehydrogenase; Provisional
Probab=36.08 E-value=22 Score=13.45 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=19.9
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8988899999999999888871889787999
Q gi|254780413|r 697 ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 697 v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
=.++|.-+-.++.=|+|++-.|+- |..|.|
T Consensus 227 R~g~pediA~~v~fLaSd~s~~iT-Gq~i~V 256 (261)
T PRK07831 227 RAAEPWEVAAVIAFLASDYSSYLT-GEVVSV 256 (261)
T ss_pred CCCCHHHHHHHHHHHHCHHHCCCC-CEEEEE
T ss_conf 975999999999999581546975-738898
No 200
>PRK06701 short chain dehydrogenase; Provisional
Probab=35.74 E-value=22 Score=13.41 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=10.0
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+++.-+-.++.=|+|++-.|+
T Consensus 254 g~peDIA~~v~fLaSd~ss~i 274 (289)
T PRK06701 254 GQPEELAPAYVYLASPDSSYI 274 (289)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 099999999999957411485
No 201
>PRK06500 short chain dehydrogenase; Provisional
Probab=35.68 E-value=22 Score=13.41 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=8.5
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-..+.=|+|.+-.|+
T Consensus 215 g~peeia~~v~fL~S~~as~i 235 (249)
T PRK06500 215 GTPEEIAKAVVFLASDESAFI 235 (249)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 599999999999958742281
No 202
>PRK08589 short chain dehydrogenase; Validated
Probab=35.63 E-value=21 Score=13.65 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=8.4
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+..|+
T Consensus 221 g~peeiA~~v~FLaSd~asyi 241 (272)
T PRK08589 221 GKPEEVAKLVVFLASDDSSFI 241 (272)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999818521783
No 203
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.62 E-value=21 Score=13.61 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999888
Q gi|254780413|r 703 SVKQIALNILSNA 715 (820)
Q Consensus 703 ~l~Qvl~NLl~NA 715 (820)
-+-.++.=|+|.+
T Consensus 207 eiA~~v~FLaSd~ 219 (237)
T PRK06550 207 EVAELTLFLASGK 219 (237)
T ss_pred HHHHHHHHHHCCH
T ss_conf 9999999995855
No 204
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.35 E-value=23 Score=13.37 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=12.0
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-.++.=|+|++..|+
T Consensus 220 ~g~p~dIa~~v~fL~Sd~s~~i 241 (252)
T PRK06947 220 AGEADEVAEAIVWLLSDAASYV 241 (252)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8199999999999968711486
No 205
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=35.28 E-value=23 Score=13.36 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=5.6
Q ss_pred EEEEEECCCCCEEE
Q ss_conf 48887638972899
Q gi|254780413|r 527 KITLGSTKEEKLLS 540 (820)
Q Consensus 527 ~~~~~~~~~~~~~~ 540 (820)
+-+....++|....
T Consensus 121 R~tfiID~~g~Ir~ 134 (173)
T cd03015 121 RGTFIIDPEGIIRH 134 (173)
T ss_pred EEEEEECCCCEEEE
T ss_conf 17999899986999
No 206
>PRK09242 tropinone reductase; Provisional
Probab=35.28 E-value=23 Score=13.36 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=11.2
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.|.|.-+-.++.-|+|.+-.|+
T Consensus 221 ~g~pediA~~v~fLaSd~s~~i 242 (258)
T PRK09242 221 IGEPEEVAAAVAFLCLPAASYI 242 (258)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8799999999999958532475
No 207
>PRK09186 flagellin modification protein A; Provisional
Probab=35.03 E-value=23 Score=13.36 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8899999999999888871889787999
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
+|.-+-.++.=|+|+.-+|+ .|..|.|
T Consensus 223 ~p~dia~~v~fL~Sd~s~~i-TGq~i~V 249 (255)
T PRK09186 223 DPEDICGSLVFLLSDQSKYI-TGQNIIV 249 (255)
T ss_pred CHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 99999999999957053680-1852883
No 208
>PRK06125 short chain dehydrogenase; Provisional
Probab=34.81 E-value=23 Score=13.31 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=10.5
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.=|+|..-.|+
T Consensus 221 ~g~peeiA~~v~fLaSd~ss~i 242 (259)
T PRK06125 221 PATPREVADLVAFLASPRSGYT 242 (259)
T ss_pred CCCHHHHHHHHHHHHCHHHCCC
T ss_conf 7889999999999958053685
No 209
>PRK07063 short chain dehydrogenase; Provisional
Probab=34.78 E-value=23 Score=13.31 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=11.1
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.=|+|.+-.|+
T Consensus 221 ~g~peeiA~~v~FLaSd~as~i 242 (259)
T PRK07063 221 IGRPEEVAMTAVFLASDEAPFI 242 (259)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 7789999999999958652582
No 210
>PRK05867 short chain dehydrogenase; Provisional
Probab=34.57 E-value=23 Score=13.28 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=15.1
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.=|+|++-.|+
T Consensus 218 ~g~pediA~~v~fLaSd~s~~i 239 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSYM 239 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8299999999999938721485
No 211
>PRK12828 short chain dehydrogenase; Provisional
Probab=34.29 E-value=23 Score=13.25 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999998888718
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t 719 (820)
.|.-+-..+.-|+|.+-+|+
T Consensus 206 ~p~diA~~v~fL~Sd~s~~i 225 (239)
T PRK12828 206 TPEQIAAVIAFLLSDEAQAI 225 (239)
T ss_pred CHHHHHHHHHHHHCCHHCCC
T ss_conf 99999999999958442285
No 212
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.18 E-value=24 Score=13.24 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=10.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+++.-+-.++.-|+|+.-.|+
T Consensus 217 ~~~p~eiA~~v~fL~S~~s~~i 238 (253)
T PRK12826 217 LGEPEDIAAAVLFLASDAARYI 238 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8599999999999968632295
No 213
>PRK04447 hypothetical protein; Provisional
Probab=33.86 E-value=24 Score=13.21 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=4.2
Q ss_pred CEEEECHHHHH
Q ss_conf 46898889999
Q gi|254780413|r 695 PRILADLRSVK 705 (820)
Q Consensus 695 p~v~~D~~~l~ 705 (820)
|.+.|==+||-
T Consensus 239 ~V~LAGGTQM~ 249 (357)
T PRK04447 239 PVLLAGGTQML 249 (357)
T ss_pred CEEECCHHHHH
T ss_conf 87977578999
No 214
>PRK12829 short chain dehydrogenase; Provisional
Probab=33.24 E-value=24 Score=13.14 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=9.2
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+-.|+
T Consensus 230 g~peeiA~~v~FLaSd~ss~i 250 (264)
T PRK12829 230 VEPEDIAATALFLASPAARYI 250 (264)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 889999999999958164580
No 215
>PRK08265 short chain dehydrogenase; Provisional
Probab=33.10 E-value=25 Score=13.12 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=12.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-.++.-|+|+.-.|+
T Consensus 212 ~g~p~dIa~~v~fL~Sd~a~~i 233 (261)
T PRK08265 212 VGDPEEVAQVVAFLCSDAASFV 233 (261)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 7589999999999967742383
No 216
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=33.01 E-value=25 Score=13.11 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999888871
Q gi|254780413|r 703 SVKQIALNILSNAIHF 718 (820)
Q Consensus 703 ~l~Qvl~NLl~NAik~ 718 (820)
-+-.++.=|+|+.-.|
T Consensus 231 evA~~v~fL~S~~s~~ 246 (260)
T PRK12823 231 EQVAAILFLASDEASY 246 (260)
T ss_pred HHHHHHHHHHCCHHCC
T ss_conf 9999999995854248
No 217
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=32.49 E-value=25 Score=13.05 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=5.1
Q ss_pred HHHHCCCCEE
Q ss_conf 9963499789
Q gi|254780413|r 325 TVDKCPIPFF 334 (820)
Q Consensus 325 ild~lp~gv~ 334 (820)
++=+.|.|++
T Consensus 114 vlvSvPLG~L 123 (315)
T TIGR02789 114 VLVSVPLGIL 123 (315)
T ss_pred HHHHHHHHHH
T ss_conf 9998408899
No 218
>TIGR01029 rpsG_bact ribosomal protein S7; InterPro: IPR005717 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=32.47 E-value=25 Score=13.05 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=30.6
Q ss_pred CHHHHHCCCCC-CCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf 68882040168-8238999998637961671688614798837999986
Q gi|254780413|r 117 RLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 (820)
Q Consensus 117 ~~~e~~~~~~~-~p~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls 164 (820)
.|..+..-... +|-.-+.+||+.--|. -|+--.++.|++|.||+++.
T Consensus 44 al~~i~~k~~~~~pl~vf~~AlenVkP~-~EVk~RRVGGaTYQVP~EV~ 91 (159)
T TIGR01029 44 ALERIAKKTGEEDPLEVFEKALENVKPL-LEVKSRRVGGATYQVPVEVR 91 (159)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCE-EEEEEEEECCCCCCCCEEEC
T ss_conf 9999998718841688999998627872-46764565486650222557
No 219
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.19 E-value=25 Score=13.02 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=8.9
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|++-.|+
T Consensus 215 g~pediA~~v~fLaSd~a~~i 235 (254)
T PRK06463 215 GKPEDIANIVLFLASDDARYI 235 (254)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 199999999999958442491
No 220
>pfam12282 H_kinase_N Signal transduction histidine kinase. This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with pfam07568, pfam08448, pfam02518. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this.
Probab=32.03 E-value=25 Score=13.00 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=40.2
Q ss_pred EEEEECCCCCEEEECHHHHHHH-CCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 5999979990999667899662-899789749968882040168823899999863796167168861479883799998
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~-G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~l 163 (820)
|+|--..+|.|+-|-+.-..-. -.-..+++|+... ......+.+++..+...++....|. . ..+|..
T Consensus 39 ~Lwvp~~~~~~vvvAq~RP~T~~T~y~~DvVG~~~~-------~~~~p~v~~a~~~g~i~~~~~~~~~-~----~~~v~~ 106 (150)
T pfam12282 39 FLWVPTRDGRAVVVAQARPNTGPTVYKDDVVGKVAP-------ADNEPLVDRALESGRIVRDSKALWQ-G----NVPVRQ 106 (150)
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHCCCEEECCCCCCC-C----CCEEEE
T ss_conf 999984899999999758999982365675787158-------1315899999970965745775345-8----823689
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 630015688736305
Q gi|254780413|r 164 AALPIYSRNREFSGF 178 (820)
Q Consensus 164 s~~Pv~d~~g~~~G~ 178 (820)
.+.||+. +|++.|.
T Consensus 107 ~~iPV~~-~g~vIaV 120 (150)
T pfam12282 107 EAVPVRH-DGKVIAV 120 (150)
T ss_pred EEECEEE-CCEEEEE
T ss_conf 8867678-9989999
No 221
>PRK06138 short chain dehydrogenase; Provisional
Probab=31.75 E-value=26 Score=12.97 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=10.2
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-.++.=|+|.+-.|+
T Consensus 218 g~pedIA~~v~FL~Sd~as~i 238 (252)
T PRK06138 218 GTAEEVAQAALFLASDESSFA 238 (252)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 889999999999967632593
No 222
>PRK07856 short chain dehydrogenase; Provisional
Probab=31.66 E-value=26 Score=12.96 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999888871
Q gi|254780413|r 701 LRSVKQIALNILSNAIHF 718 (820)
Q Consensus 701 ~~~l~Qvl~NLl~NAik~ 718 (820)
+.-+-.++.-|+|..-.|
T Consensus 211 pedvA~~v~fL~S~~s~~ 228 (254)
T PRK07856 211 PADIGWACLFLASDAASY 228 (254)
T ss_pred HHHHHHHHHHHHCCHHCC
T ss_conf 999999999995872168
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=31.20 E-value=26 Score=12.91 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.1
Q ss_pred CCCEEEEEHHHH-------HHHHCCCHHHCCC
Q ss_conf 998387215689-------9884896032078
Q gi|254780413|r 470 REGIILSTNRAV-------SKLFGYPVEDILR 494 (820)
Q Consensus 470 ~~G~i~~~N~a~-------~~l~G~~~~el~g 494 (820)
.+.+++.+|-++ .+||||.+....|
T Consensus 192 ~~~~FVAINCAAIPEnLLEsELFGyEKGAFTG 223 (451)
T TIGR02915 192 KDKRFVAINCAAIPENLLESELFGYEKGAFTG 223 (451)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 97773444167457524667760341012422
No 224
>PRK06057 short chain dehydrogenase; Provisional
Probab=30.94 E-value=26 Score=12.88 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=9.6
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-.++.=|+|.+-.|+
T Consensus 216 g~peeiA~~v~fLaSd~ss~i 236 (255)
T PRK06057 216 AEPEEIAAAVAFLASDDASFI 236 (255)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 889999999999967642482
No 225
>PRK08278 short chain dehydrogenase; Provisional
Probab=30.77 E-value=27 Score=12.85 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=3.5
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999888871
Q gi|254780413|r 708 ALNILSNAIHF 718 (820)
Q Consensus 708 l~NLl~NAik~ 718 (820)
..=|+|.+-.|
T Consensus 226 v~FL~Sd~as~ 236 (273)
T PRK08278 226 AHAILTRPARE 236 (273)
T ss_pred HHHHHCCHHHC
T ss_conf 99993875328
No 226
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit; InterPro: IPR012786 Protocatechuate (3,4-dihydroxybenzene, PCA) is an aromatic compound which is a key intermediate in the degradation of the plant biopolymer lignin and other aromatic compounds. The key step of PCA degradation is the ring-cleavage performed by dioxygenases adding both atoms from molecular oxygen to specific carbon atoms within the ring. This step can be performed by two distinct mechanisms; intradiol cleavage and extradiol cleavage. In intradiol cleavage the oxygen atoms are added to the carbons carrying the hydroxyl groups, producing two carboxylate groups. In extradiol cleavage the oxygens are added to one carbon carrying a hydroxyl group and another carrying a hydrogen, resulting in the formation of a carboxylate group and an aldehydic group. For further information see . PCA dioxygenases fall into the broader category of catechol dioxygenases. These are metalloenzymes which bind non-haeme iron. The extradiol dioxygenases use Fe(II) to activate oxygen for nucleophilic attack on the aromatic substrate, while the intradiol dioxygenases use Fe(III) to activate the aromatic substrate for an electrophilic attack by oxygen . This entry represents the alpha subunit of protocatechuate 3,4-dioxygenase, an enzyme which cleaves the PCA ring by an intradiol mechanism. It is composed of two subunits, alpha and beta (IPR012785 from INTERPRO) which are highly similar in structure and are thought to share a common ancestor , , . The core of each subunit is two four-stranded beta-sheets that fold upon each other to form a beta sandwhich. The active site cavity contains the Fe(III)-binding site and is located between the two subunits. All Fe(III) ligands are contributed by the beta subunit.; GO: 0005506 iron ion binding, 0018578 protocatechuate 34-dioxygenase activity, 0019439 aromatic compound catabolic process.
Probab=30.73 E-value=19 Score=13.93 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=8.5
Q ss_pred EEEECCCCCEEEEC
Q ss_conf 99997999099966
Q gi|254780413|r 86 TWNIDAHGYLKEIS 99 (820)
Q Consensus 86 vw~~D~eGr~~~vn 99 (820)
|||-|++|||..--
T Consensus 63 ~WQADa~G~f~~~~ 76 (203)
T TIGR02423 63 IWQADAAGRFNSPA 76 (203)
T ss_pred EECCCCCCCCCCCC
T ss_conf 85468886647767
No 227
>PRK08628 short chain dehydrogenase; Provisional
Probab=30.37 E-value=27 Score=12.81 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=12.6
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|..+-.++.=|+|.+-.|+
T Consensus 218 ~g~p~eiA~~v~FL~Sd~s~~i 239 (258)
T PRK08628 218 MTTAEEIADTAVFLLSERASHT 239 (258)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8299999999999958343493
No 228
>PRK07478 short chain dehydrogenase; Provisional
Probab=30.15 E-value=27 Score=12.78 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=12.7
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.-|+|.+-.|+
T Consensus 217 ~g~peeiA~~v~FLaSd~ss~i 238 (254)
T PRK07478 217 MAQPEEIAQAALFLASDAASFV 238 (254)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8399999999999958432384
No 229
>pfam07536 HWE_HK HWE histidine kinase. Two-component systems, consisting of a histidine kinase and a cognate response regulator protein, represent the best-known apparatus for transducing external cues into a physiological response in bacteria. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as pfam00512. The family was defined by the presence of a highly conserved H residue in the kinase domain and a WxE motif in a C-terminal ATPase domain that is related to pfam02518. These proteins are found in a variety of alpha- and gamma-proteobacteria, with significant enrichment in the rhizobia.
Probab=30.06 E-value=27 Score=12.77 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHH
Q ss_conf 23453174899999999997312687788899999999999899999999999998664318852000331799999999
Q gi|254780413|r 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 (820)
Q Consensus 592 vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~ 671 (820)
+.|=+||-|+.|.+.+-+-..... ...+|.+.+..-..- +.-..|+|. + -..+.++|.++|...
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~------s~~~~~~~~~~Rl~A-La~ah~ll~--~-------~~~~~~~L~~lv~~~ 65 (83)
T pfam07536 2 LNHRVKNTLAVVQSIARQTLRSAA------SLDEFVEAFSGRLQA-LSRAHDLLT--R-------SEWAGADLRDLLEAE 65 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHH-HHHHHHHHH--C-------CCCCCCCHHHHHHHH
T ss_conf 207787799999999998722589------999999999999999-999999983--4-------787887799999999
Q ss_pred HHHHHHHHHHCCEEE
Q ss_conf 999999987378089
Q gi|254780413|r 672 ISLVQLYANEKRILI 686 (820)
Q Consensus 672 ~~~~~~~a~~~~i~l 686 (820)
+.-+.... ..++.|
T Consensus 66 l~p~~~~~-~~rv~l 79 (83)
T pfam07536 66 LAPYGGED-AERITL 79 (83)
T ss_pred HHHHCCCC-CCEEEE
T ss_conf 88435888-886873
No 230
>PRK06227 consensus
Probab=30.01 E-value=27 Score=12.77 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=8.8
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+-.|+
T Consensus 217 g~peeiA~~v~FL~Sd~as~i 237 (256)
T PRK06227 217 GKPEDVANLCLFLASDEASFI 237 (256)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 599999999999967632492
No 231
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.62 E-value=28 Score=12.72 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=9.3
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|..-.|+
T Consensus 217 ~~p~dia~~v~fL~S~~s~~i 237 (250)
T PRK07231 217 GTPEDIANAAAFLASDEASFI 237 (250)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 199999999999968533294
No 232
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=29.61 E-value=25 Score=13.11 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 999998664318852000331799999999999999
Q gi|254780413|r 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 (820)
Q Consensus 642 ~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~ 677 (820)
||+-.|..-.+++. .+..++.++.|.+.-..|+.
T Consensus 455 ndvssynenk~~~~--~~~~i~~~~~l~~L~~~le~ 488 (527)
T TIGR01137 455 NDVSSYNENKSKKK--KFIQIGEGEKLADLSKFLEK 488 (527)
T ss_pred CCCCHHHHCCCCCC--CCCCCCCCCCHHHHHHHHCC
T ss_conf 01000101024676--76544677518999998516
No 233
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.02 E-value=28 Score=12.65 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=8.5
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+..|+
T Consensus 220 g~pedia~~v~fL~S~~as~i 240 (254)
T PRK08642 220 TTPQEFADAVLFFASPWSRAV 240 (254)
T ss_pred CCHHHHHHHHHHHHCCHHCCE
T ss_conf 599999999999948153682
No 234
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=28.92 E-value=29 Score=12.64 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 8899999999999888871
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHF 718 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~ 718 (820)
.|.-+-.++.=|+|.+..|
T Consensus 233 ~peeiA~~v~fLaSd~as~ 251 (266)
T PRK06171 233 KLSEVADLVCYLLSERASY 251 (266)
T ss_pred CHHHHHHHHHHHHCCHHCC
T ss_conf 9999999999995855258
No 235
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.87 E-value=29 Score=12.63 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 8899999999999888871
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHF 718 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~ 718 (820)
++.-+-.++.=|+|..-.|
T Consensus 215 ~p~dva~~v~fL~s~~s~~ 233 (247)
T PRK05565 215 EPEEIAKVVLFLASDDASY 233 (247)
T ss_pred CHHHHHHHHHHHHCCHHCC
T ss_conf 9999999999996862218
No 236
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.82 E-value=29 Score=12.63 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=10.6
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-+++.=|+|+.-.|+
T Consensus 222 ~g~pedia~~v~fL~S~~a~~i 243 (257)
T PRK12748 222 VGEPVDAARLIAFLASEEAKWI 243 (257)
T ss_pred CCCHHHHHHHHHHHHCCHHCCE
T ss_conf 8599999999999948553484
No 237
>PRK08339 short chain dehydrogenase; Provisional
Probab=28.57 E-value=29 Score=12.60 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=12.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.-|+|.+-.|+
T Consensus 226 ~g~pediA~~v~fL~Sd~a~~i 247 (263)
T PRK08339 226 LGEPEEIGYLVAFLASDLGSYI 247 (263)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8599999999999829442681
No 238
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase; InterPro: IPR014120 This entry contains solanesyl diphosphate synthases from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterised by heterologous expression as a solanesyl diphosphate synthase..
Probab=28.46 E-value=17 Score=14.29 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5455565789999634997899709
Q gi|254780413|r 314 YFDEGENLTPETVDKCPIPFFVYSH 338 (820)
Q Consensus 314 ~~~~~~~~~~~ild~lp~gv~i~~~ 338 (820)
+....-+++.+|.|..-.+-+||++
T Consensus 67 Elt~~HRRLAEITEmIHTASLVHDD 91 (325)
T TIGR02749 67 ELTARHRRLAEITEMIHTASLVHDD 91 (325)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 5761035313368677523222022
No 239
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase; InterPro: IPR005784 D-amino acid aminotransferase (2.6.1.21 from EC) catalyzes transamination between various D-amino acids and alpha-keto acids. This enzyme is a homodimer. The pyridoxal phosphate attachment site is a Lys in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family .; GO: 0008483 transaminase activity, 0008152 metabolic process.
Probab=28.26 E-value=29 Score=12.64 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=5.4
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 000024402333555
Q gi|254780413|r 273 EDFHTINLNQYTKKQ 287 (820)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (820)
++.||+.--..+...
T Consensus 136 ED~RWLRCDIKSLNL 150 (278)
T TIGR01121 136 EDVRWLRCDIKSLNL 150 (278)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 100344314777878
No 240
>PRK12742 oxidoreductase; Provisional
Probab=27.64 E-value=30 Score=12.48 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999888871
Q gi|254780413|r 703 SVKQIALNILSNAIHF 718 (820)
Q Consensus 703 ~l~Qvl~NLl~NAik~ 718 (820)
-+-.++.-|+|..-.|
T Consensus 208 eia~~v~fL~S~~a~~ 223 (237)
T PRK12742 208 EVAGMVAWLAGPEASF 223 (237)
T ss_pred HHHHHHHHHHCCHHCC
T ss_conf 9999999995865357
No 241
>PRK06523 short chain dehydrogenase; Provisional
Probab=27.57 E-value=30 Score=12.47 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=12.4
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-+++.=|+|-+.+|+
T Consensus 225 g~peeiA~~v~FL~Sd~s~~i 245 (260)
T PRK06523 225 AEPEEVAELIAFLASDRAASI 245 (260)
T ss_pred CCHHHHHHHHHHHHCCHHCCE
T ss_conf 599999999999948442686
No 242
>pfam02406 MmoB_DmpM MmoB/DmpM family. This family consists of monooxygenase components such as MmoB methane monooxygenase (EC:1.14.13.25) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilizes intermediates required for the activation of dioxygen. Also found in this family is DmpM or Phenol hydroxylase (EC:1.14.13.7) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase.
Probab=27.36 E-value=30 Score=12.45 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=14.9
Q ss_pred EEEECCCCCEEEECHHHHHHHC
Q ss_conf 9999799909996678996628
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIG 107 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G 107 (820)
-|++|++|+++.--...++.+|
T Consensus 36 ~irI~a~g~l~i~~~tieE~LG 57 (87)
T pfam02406 36 YVRIDAEGELRIDRETIEEALG 57 (87)
T ss_pred EEEEECCCEEEEEHHHHHHHHC
T ss_conf 8999129839998789799858
No 243
>pfam08066 PMC2NT PMC2NT (NUC016) domain. This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components.
Probab=27.24 E-value=30 Score=12.43 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
Q ss_conf 9999999989999999999999866431885200033179999999999999998
Q gi|254780413|r 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 (820)
Q Consensus 625 ~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a 679 (820)
++-+.|.++++|++.|+|+||-..-......... ...++.+--+.+++.+-...
T Consensus 25 ~~~~~ld~~s~rLl~l~n~ll~~~~~~~~~~~~~-~~~~~e~~w~~vvdv~D~ll 78 (91)
T pfam08066 25 EFSQSLDEQSQRLLSLINDLLQSAGSKSDIPDRS-DEDDVEDQWEGVVDVNDSLL 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999998447667887875-42318899999999999999
No 244
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=27.20 E-value=30 Score=12.43 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999988
Q gi|254780413|r 701 LRSVKQIALNILSN 714 (820)
Q Consensus 701 ~~~l~Qvl~NLl~N 714 (820)
|.-+-..+.=|+|+
T Consensus 217 pediA~~v~fLasd 230 (247)
T PRK12935 217 ADEIAKGVVYLCRD 230 (247)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999579
No 245
>PRK06346 consensus
Probab=27.16 E-value=30 Score=12.43 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=15.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHCC
Q ss_conf 89888999999999998888718
Q gi|254780413|r 697 ILADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 697 v~~D~~~l~Qvl~NLl~NAik~t 719 (820)
-.+.|.-+-.+..-|+|.+-.|+
T Consensus 216 R~g~pediA~~v~fL~Sd~s~~i 238 (251)
T PRK06346 216 RAGQAEEIAQVALFLASDDASFV 238 (251)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC
T ss_conf 87689999999999957153593
No 246
>pfam06366 FlhE Flagellar protein FlhE. This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown.
Probab=27.06 E-value=31 Score=12.41 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=6.9
Q ss_pred CCCCCEEEEEEECCCCC
Q ss_conf 77898105999979990
Q gi|254780413|r 78 PIPRTVRFTWNIDAHGY 94 (820)
Q Consensus 78 ~~~~~~rfvw~~D~eGr 94 (820)
+...++||+|.+...||
T Consensus 98 ~A~~~frFv~~v~g~G~ 114 (131)
T pfam06366 98 AATEPFRFVYRVPGGGR 114 (131)
T ss_pred CCCCCEEEEEEECCCCC
T ss_conf 99996799999469984
No 247
>PRK12939 short chain dehydrogenase; Provisional
Probab=27.05 E-value=31 Score=12.41 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=11.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.-|+|++..|+
T Consensus 215 ~g~pedia~~v~fL~S~~s~~i 236 (250)
T PRK12939 215 LQVPDDVAGAVLFLLSDAARFV 236 (250)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8099999999999948164690
No 248
>PRK08226 short chain dehydrogenase; Provisional
Probab=26.99 E-value=31 Score=12.40 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=9.0
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|..-.|+
T Consensus 222 g~peeiA~~v~FLaSd~a~yi 242 (263)
T PRK08226 222 ADPLEVGELAAFLASDESSYL 242 (263)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999958363480
No 249
>PRK07479 consensus
Probab=26.87 E-value=31 Score=12.39 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=12.0
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-+++.-|+|..-.|+
T Consensus 218 ~g~pedia~~v~fL~S~~s~~i 239 (252)
T PRK07479 218 FSTPQDVANAALYLASDEASFI 239 (252)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8099999999999968443294
No 250
>TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D; InterPro: IPR006492 The proteins in this set represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism. .
Probab=26.34 E-value=31 Score=12.32 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=6.8
Q ss_pred CCHHHHHHHHH
Q ss_conf 60689999999
Q gi|254780413|r 775 GLGLPLAKAMV 785 (820)
Q Consensus 775 GLGLai~k~iV 785 (820)
||||||+=.|+
T Consensus 13 GLGlSi~LhLI 23 (55)
T TIGR01605 13 GLGLSITLHLI 23 (55)
T ss_pred CCHHHHHHHHH
T ss_conf 00488999999
No 251
>PRK12827 short chain dehydrogenase; Provisional
Probab=25.85 E-value=32 Score=12.26 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=18.3
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8988899999999999888871889787999
Q gi|254780413|r 697 ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 697 v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
=.++|.-+-.++.-|+|++-.|+ .|..+.|
T Consensus 217 R~g~pediA~~v~fLaSd~s~~i-TG~~i~V 246 (251)
T PRK12827 217 RLGEPDEVAALVAFLVSDAASYV-TGQVIPV 246 (251)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCC-CCCEEEE
T ss_conf 97789999999999958332496-5864875
No 252
>pfam03671 Ufm1 Ubiquitin fold modifier 1 protein. This is a family of short ubiquitin-like proteins, that is like neither type-1 or type-2. It is a ubiquitin-fold modifier 1 (Ufm1) that is synthesized in a precursor form of 85 amino-acid residues. In humans the enzyme for Ufm1 is Uba5 and the conjugating enzyme is Ufc1. Prior to activation by Uba5 the extra two amino acids at the C-terminal region of the human pro-Ufm1 protein are removed to expose Gly whose residue is necessary for conjugation to target molecule(s). The mature Ufm1 is conjugated to yet unidentified endogenous proteins,. While Ubiquitin and many Ubls possess the conserved C-terminal di-glycine that is adenylated by each specific E1 or E1-like enzyme, respectively, in an ATP-dependent manner, Ufm1(1-83) possesses a single glycine at its C-terminus, which is followed by a Ser-Cys dipeptide in the precursor form of Ufm1. The C-terminally processed Ufm1(1-83) is specifically activated by Uba5, an E1-like enzyme, and then t
Probab=25.64 E-value=31 Score=12.33 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=13.4
Q ss_pred EEECCCCCCHHHH-HHHCC
Q ss_conf 9978897898886-64237
Q gi|254780413|r 741 VRDTGVGMTNYEL-EKAMK 758 (820)
Q Consensus 741 V~DtG~GI~~~~~-~~iFe 758 (820)
+++.|+||.|.+- ..+|-
T Consensus 49 iTndGvGINP~qtAGnvfl 67 (76)
T pfam03671 49 ITNDGIGINPAQSAGNVFL 67 (76)
T ss_pred EECCCCCCCHHHCCCCCHH
T ss_conf 9458612084543431111
No 253
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.34 E-value=33 Score=12.20 Aligned_cols=90 Identities=22% Similarity=0.328 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHHH----------HHHHHHH
Q ss_conf 6887899999999998523453174899999999997312687788899999999----9998----------9999999
Q gi|254780413|r 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY----IDRS----------GNLVLDI 640 (820)
Q Consensus 575 ~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~----i~~~----------~~~l~~l 640 (820)
-+.+..+|++|-||++.+.||--= ++++++|+.++ +--.+.++. ++.. -+++-.|
T Consensus 128 Ik~LSKGnqQKIQfisaviHePeL----------lILDEPFSGLD-PVN~elLk~~I~~lk~~GatIifSsH~Me~vEeL 196 (300)
T COG4152 128 IKELSKGNQQKIQFISAVIHEPEL----------LILDEPFSGLD-PVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL 196 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCE----------EEECCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf 777530116789999998528877----------99668866887-2329999999999873587799853337889998
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 9999998664318852000331799999999999999987378089997
Q gi|254780413|r 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 (820)
Q Consensus 641 i~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~ 689 (820)
.+++|-+.| |+.- +.-.+..++...-++++.|+.+
T Consensus 197 CD~llmL~k---G~~V-----------~~G~v~~ir~~~Gkk~~~ies~ 231 (300)
T COG4152 197 CDRLLMLKK---GQTV-----------LYGTVEDIRRSFGKKRLVIESD 231 (300)
T ss_pred HHHHHEECC---CCEE-----------EECCHHHHHHHCCCCEEEEECC
T ss_conf 666423008---9457-----------7465999998638725999546
No 254
>PRK07791 short chain dehydrogenase; Provisional
Probab=24.71 E-value=34 Score=12.12 Aligned_cols=20 Identities=10% Similarity=-0.036 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999998888718
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t 719 (820)
.|.-+-.++.=|+|.+..|+
T Consensus 226 ~PedIA~~v~FLaSd~asyI 245 (285)
T PRK07791 226 APENVSPLVVWLGSAESRDV 245 (285)
T ss_pred CHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999817400787
No 255
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=24.65 E-value=9.6 Score=16.12 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred HCCCCCCCEEEECHHHHHH---HHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHH
Q ss_conf 3188520003317999999---999999999873780899973798846898889999999
Q gi|254780413|r 651 ESGKMNLHFEPVSLDEAVS---EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 (820)
Q Consensus 651 eaG~~~l~~~~vdl~~lv~---~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl 708 (820)
+.|+..+....-+|+..+. +++.-+=.+.+++|++ +.. ..- -+..|+..|+++.
T Consensus 138 ~~~~i~l~lT~~eLA~~iGttREtVsR~L~~l~~~GlI-~~~--~~~-I~I~D~~~L~~lA 194 (201)
T PRK13918 138 DSGETMIYATHDELAAAVGSVRETVTKVVGELSREGVI-RSG--YGK-IQLLDLKALKELA 194 (201)
T ss_pred CCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE-EEC--CCE-EEEECHHHHHHHH
T ss_conf 99548805799999988598689999999999988988-967--998-9992899999998
No 256
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=24.64 E-value=34 Score=12.11 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999987378089997379884689888999999999998888718
Q gi|254780413|r 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 664 l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t 719 (820)
|.++.+++...++..+.++++.+++..-...|++.+|+. +++++.+|.+..
T Consensus 296 l~~~~~~i~~~~~~ia~~~g~~~~~~~~~~~~pv~~d~~-----l~~~~~~aa~~~ 346 (408)
T PRK12893 296 LDAMEAEIRAACAEIAAARGVEITVETVWDFPPVPFDPA-----LVALVRQAAEAL 346 (408)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHH-----HHHHHHHHHHHC
T ss_conf 999999999999999987197499999983798678999-----999999999974
No 257
>COG5388 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.63 E-value=34 Score=12.11 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=23.6
Q ss_pred EEEEEECCCC--CEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCC
Q ss_conf 0599997999--099966789966289978974996888204016
Q gi|254780413|r 84 RFTWNIDAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 (820)
Q Consensus 84 rfvw~~D~eG--r~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~ 126 (820)
-||-+.|.+| -|..+--..|.++| -|+-|+.|..++..-+
T Consensus 60 ~FiL~~~~~G~~~FRLAGTriC~LfG---RELr~~~F~sLW~~~~ 101 (209)
T COG5388 60 VFILERDGRGKLPFRLAGTRICDLFG---RELRGRDFLSLWAEAD 101 (209)
T ss_pred EEEEECCCCCCCEEEECCCCHHHHHC---HHHCCCCHHHHCCCCC
T ss_conf 68984057787307851642033336---5542995567536103
No 258
>pfam00949 Peptidase_S7 Peptidase S7, Flavivirus NS3 serine protease. The viral genome is a positive strand RNA that encodes a single polyprotein precursor. Processing of the polyprotein precursor into mature proteins is carried out by the host signal peptidase and by NS3 serine protease, which requires NS2B (pfam01002) as a cofactor.
Probab=24.59 E-value=34 Score=12.10 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEEECCCCCEEEEEEEEEEEE
Q ss_conf 63001568873630556689852
Q gi|254780413|r 164 AALPIYSRNREFSGFRGFGIVHV 186 (820)
Q Consensus 164 s~~Pv~d~~g~~~G~rG~gv~r~ 186 (820)
|+.|+++.+|++.|..|.++...
T Consensus 115 SGSpI~N~~g~ivGlYgngl~~~ 137 (150)
T pfam00949 115 SGSPIFNQNGQIVGLYGNGLVTG 137 (150)
T ss_pred CCCCEECCCCCEEEEECCEEEEC
T ss_conf 99865868997999953649966
No 259
>PRK06398 aldose dehydrogenase; Validated
Probab=24.58 E-value=34 Score=12.10 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=9.2
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
++|.-+-.++.=|+|....|.
T Consensus 214 g~peeiA~~v~FLaSd~as~i 234 (256)
T PRK06398 214 GRPEEVASVVAFLASDESSFI 234 (256)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 789999999999948453383
No 260
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.54 E-value=34 Score=12.09 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=13.9
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.+.-+-.++.=|+|.+-.|+
T Consensus 220 ~g~pediA~~v~FL~Sd~s~~i 241 (277)
T PRK05875 220 VGEVEDIANLAMFLLSDAASWI 241 (277)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8689999999999958831686
No 261
>PRK02625 DNA-directed RNA polymerase subunit gamma; Provisional
Probab=24.39 E-value=31 Score=12.33 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-EEEEEEEECCCCEEEEEEEE
Q ss_conf 9999999999988887188978-79999998049949999997
Q gi|254780413|r 702 RSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRD 743 (820)
Q Consensus 702 ~~l~Qvl~NLl~NAik~t~~gg-~v~v~~~~~~~~~v~i~V~D 743 (820)
.|.+--++-|.+|-+ .+|..| .|.+-+..---|-..++..+
T Consensus 484 a~~Ea~~lmls~~ni-lsPa~g~pi~~psQDmvlG~yylT~~~ 525 (627)
T PRK02625 484 AQTEARMLMLASNNI-LSPATGEPIVTPSQDMVLGCYYLTAEN 525 (627)
T ss_pred HHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 999999985311577-778889972235512110323650356
No 262
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.30 E-value=34 Score=12.06 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCC------CCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEEC
Q ss_conf 889999999999988887188------97879999998049949999997889789888664237718734
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFTP------SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t~------~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~ 764 (820)
.|..+-.++.=|.|-+.+|.- .||+|.+-- .....-++...|-+-+++.+...+.+.|...
T Consensus 221 ~PeeVA~~v~fLaSd~as~ITGq~l~VdGG~v~~~~----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 287 (303)
T PRK07792 221 SPEHVVTLVQFLASPAAAGVNGQLFIVYGPQVTLVA----APTAERRFSADGDAWDPAELSATLRDYFADR 287 (303)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECC----CCEECCEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999999997391006987987998699999733----8744440536899779999999999998426
No 263
>pfam11505 DUF3216 Protein of unknown function (DUF3216). This family of archaeal proteins with unknown function appears to be restricted ton Thermococcaceae.
Probab=24.19 E-value=34 Score=12.05 Aligned_cols=38 Identities=21% Similarity=0.075 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997312687788899999999999899999
Q gi|254780413|r 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 (820)
Q Consensus 601 ~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~ 638 (820)
.+|.||++-|+...-....|++..+.++.|+..-..+-
T Consensus 43 vsIlGFlEGiLttLk~Ky~de~i~~Lle~v~~~R~ele 80 (96)
T pfam11505 43 AGIYGFLEGILTTLKLKHEDEEIEELLNEIKKAREEEE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999986463879999999999999999
No 264
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=24.18 E-value=34 Score=12.05 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=9.9
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|..-.|+
T Consensus 226 g~pediA~~v~fL~S~~ss~i 246 (260)
T PRK08416 226 GQPEDLAGACLFLCSEKASWL 246 (260)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 199999999999948542686
No 265
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.79 E-value=35 Score=12.00 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=8.1
Q ss_pred ECHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999998888718
Q gi|254780413|r 699 ADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 699 ~D~~~l~Qvl~NLl~NAik~t 719 (820)
+.|.-+-.++.=|+|.+-.|+
T Consensus 215 g~pedia~~v~fL~S~~s~~i 235 (250)
T PRK08063 215 VEPEDLVNAVLFLCSPKADMI 235 (250)
T ss_pred CCHHHHHHHHHHHHCCHHCCC
T ss_conf 699999999999937453482
No 266
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=23.75 E-value=35 Score=11.99 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=11.6
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-.++.=|+|.+-.|+
T Consensus 218 ~g~peeiA~~v~fL~S~~a~~i 239 (253)
T PRK08993 218 WGLPSDLMGPVVFLASSASDYI 239 (253)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8199999999999958432282
No 267
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G; InterPro: IPR010228 This entry represents the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051536 iron-sulfur cluster binding.
Probab=23.61 E-value=28 Score=12.65 Aligned_cols=34 Identities=9% Similarity=-0.108 Sum_probs=17.6
Q ss_pred HCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 2899789749968882040168823899999863
Q gi|254780413|r 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 (820)
Q Consensus 106 ~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~ 139 (820)
+.+.+.+-+|...--|.....|.+.|--+..|-.
T Consensus 15 ~vlqAc~~~G~~IPrFC~H~~L~~AGnCRMCLVE 48 (715)
T TIGR01973 15 TVLQACLKAGIEIPRFCYHEKLSIAGNCRMCLVE 48 (715)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCHHCCCCEEEE
T ss_conf 2899999658989854236666620001112166
No 268
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.59 E-value=35 Score=11.97 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.5
Q ss_pred CCCEEEEEHH
Q ss_conf 9983872156
Q gi|254780413|r 470 REGIILSTNR 479 (820)
Q Consensus 470 ~~G~i~~~N~ 479 (820)
..|+|+.++.
T Consensus 126 ~~G~IVnisS 135 (277)
T PRK05993 126 GHGRIVQCSS 135 (277)
T ss_pred CCCEEEEECC
T ss_conf 9838999888
No 269
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=23.27 E-value=36 Score=11.93 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=21.2
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8988899999999999888871889787999
Q gi|254780413|r 697 ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 697 v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
=.+.|.-+-.++.=|+|++-.|+- |..|.|
T Consensus 217 R~g~peeiA~~v~fLaSd~as~iT-G~~i~V 246 (261)
T PRK12428 217 RPATADEQAAVLVFLCSDAARWIN-GVNLPV 246 (261)
T ss_pred CCCCHHHHHHHHHHHHCCHHCCCC-CCEEEC
T ss_conf 980999999999999496325736-842882
No 270
>PRK12747 short chain dehydrogenase; Provisional
Probab=22.95 E-value=36 Score=11.88 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=11.2
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.+.|.-+-.++.-|+|...+|.
T Consensus 218 ~g~p~dvA~~v~fL~S~~a~~i 239 (252)
T PRK12747 218 LGEVEDIADTAAFLASPDSRWV 239 (252)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 8599999999999958443382
No 271
>PRK06949 short chain dehydrogenase; Provisional
Probab=22.32 E-value=37 Score=11.80 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999888871
Q gi|254780413|r 701 LRSVKQIALNILSNAIHF 718 (820)
Q Consensus 701 ~~~l~Qvl~NLl~NAik~ 718 (820)
|.-+-.++.-|+|.+-+|
T Consensus 228 pedia~~v~fL~S~~s~~ 245 (258)
T PRK06949 228 PEDLDGLLLLLAADESQF 245 (258)
T ss_pred HHHHHHHHHHHHCCHHCC
T ss_conf 999999999983873167
No 272
>pfam07568 HisKA_2 Histidine kinase. This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536. It is usually found adjacent to a C-terminal ATPase domain (pfam02518). This domain is found in a wide range of Bacteria and also several Archaea.
Probab=22.08 E-value=38 Score=11.76 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHH
Q ss_conf 23453174899999999997312687788899999999999899999999999998664318852000331799999999
Q gi|254780413|r 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 (820)
Q Consensus 592 vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~ 671 (820)
+.|=++|-|..|.++..+ +.+. ..++..++.+..+..-...|..+=+.|- + .-....||+.+.+.+.
T Consensus 2 v~HRVKNnLq~i~sll~l-q~~~---~~~~~~~~~l~~~~~RI~a~a~vH~~Ly---~------~~~~~~v~~~~yl~~L 68 (76)
T pfam07568 2 IHHRVKNNLQVISSLLRL-QARR---AKDEEVKEALRESQNRVLSMALIHEELY---K------SEDLDTVDFSEYLEKL 68 (76)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHH---C------CCCCCEECHHHHHHHH
T ss_conf 038898579999999998-7342---5999999999999999999999999997---6------9997846399999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780413|r 672 ISLVQL 677 (820)
Q Consensus 672 ~~~~~~ 677 (820)
+..+..
T Consensus 69 ~~~l~~ 74 (76)
T pfam07568 69 TENLFS 74 (76)
T ss_pred HHHHHH
T ss_conf 999997
No 273
>pfam07057 TraI DNA helicase TraI. This family represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI (EC:3.6.1.-). TraI is a bifunctional protein that catalyses the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer.
Probab=21.69 E-value=38 Score=11.71 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=11.6
Q ss_pred EEEEECCCCCEEEE
Q ss_conf 30015688736305
Q gi|254780413|r 165 ALPIYSRNREFSGF 178 (820)
Q Consensus 165 ~~Pv~d~~g~~~G~ 178 (820)
++|+||++|.-.|.
T Consensus 95 AlPv~D~NGK~AG~ 108 (126)
T pfam07057 95 ALPVWDRNGKSAGA 108 (126)
T ss_pred ECEEECCCCCEEEE
T ss_conf 02105478843005
No 274
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II; InterPro: IPR014119 The proteins in this entry are component II of the heterodimeric heptaprenyl diphosphate synthase. They are found proximate to the gene for component I (IPR009920 from INTERPRO). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis..
Probab=21.54 E-value=25 Score=13.10 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHCCH
Q ss_conf 999999999999742204
Q gi|254780413|r 447 MEIEVMQLCSILEATSDG 464 (820)
Q Consensus 447 L~~~~~~L~~ile~~~~g 464 (820)
|-+...+|.+|.-.+++.
T Consensus 175 LIA~SCqLGAia~Ga~~~ 192 (325)
T TIGR02748 175 LIAASCQLGAIASGADEA 192 (325)
T ss_pred HHHHHHHHHCCCCCCCHH
T ss_conf 999877652000588987
No 275
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.43 E-value=39 Score=11.67 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=13.6
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999998888718
Q gi|254780413|r 698 LADLRSVKQIALNILSNAIHFT 719 (820)
Q Consensus 698 ~~D~~~l~Qvl~NLl~NAik~t 719 (820)
.++|.-+-.+..=|+|.+..|+
T Consensus 253 ~g~peeiA~~v~FLaSd~as~I 274 (298)
T PRK06300 253 PMEAEQVGAVAAFLVSPLASAI 274 (298)
T ss_pred CCCHHHHHHHHHHHHCCHHCCC
T ss_conf 9899999999999808400695
No 276
>KOG1135 consensus
Probab=21.35 E-value=39 Score=11.66 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=34.0
Q ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECC-CCCC
Q ss_conf 68988899999999999888871889787999999804994999999788-9789
Q gi|254780413|r 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG-VGMT 749 (820)
Q Consensus 696 ~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG-~GI~ 749 (820)
.+.+|+ +|.|.=.-|+.+.+++--.||-..+ .+|.|.++..|+| +.|.
T Consensus 695 v~igd~-rLadfKq~L~~kgi~aEf~ggglL~-----~~g~VavRk~d~G~i~ie 743 (764)
T KOG1135 695 VLIGDL-RLADFKQLLTEKGIQAEFKGGGLLV-----CNGCVAVRKVDTGKITIE 743 (764)
T ss_pred EEECCH-HHHHHHHHHHHCCEEEEEECCCEEE-----ECCEEEEEECCCCEEEEE
T ss_conf 463670-2999999987378378982584899-----788899998079617882
No 277
>cd01766 Ufm1 Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=21.15 E-value=39 Score=11.63 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=12.3
Q ss_pred EEECCCCCCHHHH-HHHC
Q ss_conf 9978897898886-6423
Q gi|254780413|r 741 VRDTGVGMTNYEL-EKAM 757 (820)
Q Consensus 741 V~DtG~GI~~~~~-~~iF 757 (820)
|++.|+||.|.+- ..+|
T Consensus 49 ITndGvGInP~QtAg~vf 66 (82)
T cd01766 49 ITNDGIGINPAQTAGNVF 66 (82)
T ss_pred EECCCCCCCHHHCCCEEE
T ss_conf 945861208343344030
No 278
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=20.88 E-value=40 Score=11.59 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=5.7
Q ss_pred HHHHHHHHCCHHEE
Q ss_conf 99999742204307
Q gi|254780413|r 454 LCSILEATSDGIAI 467 (820)
Q Consensus 454 L~~ile~~~~gI~~ 467 (820)
|..+-+....||++
T Consensus 265 l~~~~ea~d~GvVV 278 (347)
T TIGR00519 265 LSKLQEAIDSGVVV 278 (347)
T ss_pred HHHHHHHHHCCEEE
T ss_conf 99877632287168
No 279
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995 This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=20.73 E-value=26 Score=12.94 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECH
Q ss_conf 999999999999987378089997379884689888
Q gi|254780413|r 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 (820)
Q Consensus 666 ~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~ 701 (820)
+.|+.++..+-..++..+..+-+.-+++=..-+.|+
T Consensus 428 EA~D~~~gri~~~~~~~g~~~llTADHGNAE~M~De 463 (529)
T TIGR01307 428 EALDVCLGRIVEACKKVGGTLLLTADHGNAEEMKDE 463 (529)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 998799999999997489629996055660016788
No 280
>PRK06279 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.59 E-value=40 Score=11.55 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 7988468988899999999999888871889787999999804994999999788978988866423771
Q gi|254780413|r 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 691 ~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
.|.+-.|..+ +=.-.-.-++.|.|-.|| |+++|... .+... +.|..--+.-.++..+ ||||
T Consensus 35 ~P~iv~v~~~--~~t~~~~~~lANsITLTP--GTvtvDv~-~d~~~--L~VHal~~~~~edvi~--fE~y 95 (101)
T PRK06279 35 DPEVIEIETD--INSPVGQVLLASSITLTP--GTLTIDLD-SENKI--LKVASISPRSKDDIIP--FEPY 95 (101)
T ss_pred CCEEEEEECC--CCCHHHHHHHHHEEECCC--CEEEEEEC-CCCCE--EEEEECCCCCHHHCCC--CHHH
T ss_conf 9608998556--687287998966011489--66999875-88887--9999878666544045--0599
No 281
>PRK07890 short chain dehydrogenase; Provisional
Probab=20.55 E-value=40 Score=11.55 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999888871
Q gi|254780413|r 701 LRSVKQIALNILSNAIHF 718 (820)
Q Consensus 701 ~~~l~Qvl~NLl~NAik~ 718 (820)
|.-+-.++.=|+|....|
T Consensus 226 p~diA~~v~fL~Sd~a~~ 243 (258)
T PRK07890 226 DDEVASAVLFLASDLASA 243 (258)
T ss_pred HHHHHHHHHHHHCCHHCC
T ss_conf 999999999995853239
No 282
>PRK06172 short chain dehydrogenase; Provisional
Probab=20.49 E-value=40 Score=11.54 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 8899999999999888871
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHF 718 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~ 718 (820)
.|.-+-.++.=|+|.+..|
T Consensus 220 ~pediA~~v~FLaSd~a~~ 238 (253)
T PRK06172 220 KVEEIANAVLYLCSDGASF 238 (253)
T ss_pred CHHHHHHHHHHHHCCHHCC
T ss_conf 9999999999993853268
No 283
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=20.47 E-value=40 Score=11.54 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998888718897
Q gi|254780413|r 703 SVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 703 ~l~Qvl~NLl~NAik~t~~g 722 (820)
++.--++++|.-=-.|.|.|
T Consensus 817 ~v~~~m~~~l~kd~~ylPdG 836 (1552)
T TIGR02386 817 KVTDAMMKLLKKDTYYLPDG 836 (1552)
T ss_pred HHHHHHHHHHHHCCEECCCC
T ss_conf 88999998740124026886
No 284
>pfam01730 UreF UreF. This family consists of the Urease accessory protein UreF. The urease enzyme (urea amidohydrolase) hydrolyses urea into ammonia and carbamic acid. UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein.
Probab=20.35 E-value=41 Score=11.52 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89999999999988887188978
Q gi|254780413|r 701 LRSVKQIALNILSNAIHFTPSGG 723 (820)
Q Consensus 701 ~~~l~Qvl~NLl~NAik~t~~gg 723 (820)
..-+.+.+.|+++||+|..|=|.
T Consensus 115 ~~~l~s~~~n~v~aavRliplGq 137 (150)
T pfam01730 115 LAYLYAWVENLVSAAVRLVPLGQ 137 (150)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999998638786
Done!