HHsearch alignment for GI: 254780413 and conserved domain: pfam00989
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.37 E-value=7.2e-12 Score=104.89 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=70.7
Q ss_pred HHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 99999997422043078599838721568998848960320786443345645627789999988606984022348887
Q gi|254780413|r 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 (820)
Q Consensus 452 ~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (820)
T Consensus 1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~ 79 (112)
T pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEE-SRGGEVSF 79 (112)
T ss_pred CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEEE
T ss_conf 97999998342461999899999999165332258636674375201245753439999999999981997-68877652
Q ss_pred ECCCCCEEEEEEEEEECCCCC---EEEEEEEEH
Q ss_conf 638972899999988717887---399998651
Q gi|254780413|r 532 STKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 (820)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~---~~~~v~~Di 561 (820)
T Consensus 80 ~~~dG~~~~~~~~~~pi~d~~g~~g~v~i~rDI 112 (112)
T pfam00989 80 RVPDGRPRHVEVRASPVRDAGGEIGFLGVLRDI 112 (112)
T ss_pred ECCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf 879998999999999999199999999999849