HHsearch alignment for GI: 254780413 and conserved domain: pfam00989
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.25 E-value=4.4e-11 Score=99.10 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCC-CEEEEECCCCCCCEEEEE
Q ss_conf 5999979990999667899662899789749968882040168823-89999986379616-716886147988379999
Q gi|254780413|r 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY-GKTTLWPIEGTNLYVPID 162 (820)
Q Consensus 85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~-~~~~~~~~~g~~~~~~v~ 162 (820)
T Consensus 13 ~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~--~~~~ 90 (112)
T pfam00989 13 GIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVSFRVPDGRP--RHVE 90 (112)
T ss_pred HEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCE--EEEE
T ss_conf 61999899999999165332258636674375201245753439999999999981997688776528799989--9999
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf 8630015688736305566898522
Q gi|254780413|r 163 LAALPIYSRNREFSGFRGFGIVHVN 187 (820)
Q Consensus 163 ls~~Pv~d~~g~~~G~rG~gv~r~~ 187 (820)
T Consensus 91 ~~~~pi~d~~g~~-g~v--~i~rDI 112 (112)
T pfam00989 91 VRASPVRDAGGEI-GFL--GVLRDI 112 (112)
T ss_pred EEEEEEECCCCCE-EEE--EEEECC
T ss_conf 9999999199999-999--999849