HHsearch alignment for GI: 254780413 and conserved domain: pfam07310

>pfam07310 PAS_5 PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.

Probab=90.59  E-value=1.1  Score=22.90  Aligned_cols=90  Identities=14%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             CEEEEEEECCCC--CEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCE
Q ss_conf             810599997999--0999667899662899789749968882040168823-8999998637961671688614798837
Q gi|254780413|r   82 TVRFTWNIDAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLY  158 (820)
Q Consensus        82 ~~rfvw~~D~eG--r~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~  158 (820)
T Consensus        38 p~~file~~~~~~~r~RlaGt~l~~~~G~---d~~G~~~~~l~~~~~r~~~~~~l~~v~~~~~p~~~~~~~~~~~g~~--  112 (137)
T pfam07310        38 GDVFILERDAPGGAPFRLAGTRLCALFGR---ELRGIPFSALWTEASRREIARVLDVVFDRTLPVLAGVDAEARNGRS--  112 (137)
T ss_pred             CCCEEEEEECCCCEEEEEECHHHHHHHCC---CCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC--
T ss_conf             71389998479967999817889998299---8889788996196779999999999975894399997786389870--


Q ss_pred             EEEEEEEEEEECCCCCEE
Q ss_conf             999986300156887363
Q gi|254780413|r  159 VPIDLAALPIYSRNREFS  176 (820)
Q Consensus       159 ~~v~ls~~Pv~d~~g~~~  176 (820)
T Consensus       113 ~~~e~LlLPL~~d~g~vd  130 (137)
T pfam07310       113 LHFELLLLPLATRSGTPD  130 (137)
T ss_pred             EEEEEEECCCCCCCCCHH
T ss_conf             154355525789999722