HHsearch alignment for GI: 254780413 and conserved domain: pfam08447

>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=97.66  E-value=0.0002  Score=50.36  Aligned_cols=79  Identities=9%  Similarity=0.056  Sum_probs=60.3

Q ss_pred             EEEEHHHHHHHHCCCHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCC
Q ss_conf             8721568998848960320786--44334564562778999998860698402234888763897289999998871788
Q gi|254780413|r  474 ILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS  551 (820)
Q Consensus       474 i~~~N~a~~~l~G~~~~el~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (820)
T Consensus         1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~-~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~   79 (90)
T pfam08447         1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKK-GEPYSGEYRIRRKDGEYRWVEARGRPIRDE   79 (90)
T ss_pred             CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCEEEEEEEEEEEECC
T ss_conf             9999989999849990110799889998719056889998878888605-874046899981599399999999999999


Q ss_pred             CE
Q ss_conf             73
Q gi|254780413|r  552 SC  553 (820)
Q Consensus       552 ~~  553 (820)
T Consensus        80 ~G   81 (90)
T pfam08447        80 NG   81 (90)
T ss_pred             CC
T ss_conf             99